GSE130291:vernalization in Arabidopsis thaliana
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT5G13910
|
AT5G13910 | Integrase-type DNA-binding superfamily protein |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
LEP | arTal_v1_Chr5_-_4483247_4483247 | -0.02 | 9.4e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr1_-_9956960_9956980 Show fit | 0.93 |
AT1G28370.1
AT1G28370.2 |
ERF domain protein 11 |
|
arTal_v1_Chr4_-_9754161_9754161 Show fit | 0.91 |
AT4G17490.1
|
ethylene responsive element binding factor 6 |
|
arTal_v1_Chr5_+_5718498_5718498 Show fit | 0.69 |
AT5G17350.1
|
hypothetical protein |
|
arTal_v1_Chr1_+_29502506_29502582 Show fit | 0.58 |
AT1G78410.1
AT1G78410.2 |
VQ motif-containing protein |
|
arTal_v1_Chr5_-_37999_37999 Show fit | 0.57 |
AT5G01100.1
|
O-fucosyltransferase family protein |
|
arTal_v1_Chr5_+_26772644_26772644 Show fit | 0.54 |
AT5G67080.1
|
mitogen-activated protein kinase kinase kinase 19 |
|
arTal_v1_Chr1_-_27640643_27640643 Show fit | 0.43 |
AT1G73500.1
|
MAP kinase kinase 9 |
|
arTal_v1_Chr5_-_4986377_4986377 Show fit | 0.43 |
AT5G15350.1
|
early nodulin-like protein 17 |
|
arTal_v1_Chr3_-_3357754_3357754 Show fit | 0.38 |
AT3G10720.2
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
arTal_v1_Chr3_+_10505711_10505711 Show fit | 0.37 |
AT3G28180.1
|
Cellulose-synthase-like C4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.0 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
0.0 | 1.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
0.0 | 0.7 | GO:0010244 | response to low fluence blue light stimulus by blue low-fluence system(GO:0010244) |
0.1 | 0.6 | GO:0007155 | cell adhesion(GO:0007155) biological adhesion(GO:0022610) |
0.0 | 0.5 | GO:0052317 | camalexin biosynthetic process(GO:0010120) camalexin metabolic process(GO:0052317) |
0.0 | 0.5 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
0.1 | 0.3 | GO:0001887 | selenium compound metabolic process(GO:0001887) |
0.0 | 0.3 | GO:0009870 | defense response signaling pathway, resistance gene-dependent(GO:0009870) |
0.1 | 0.2 | GO:0033477 | S-methylmethionine metabolic process(GO:0033477) S-methylmethionine cycle(GO:0033528) |
0.0 | 0.2 | GO:0009052 | pentose-phosphate shunt, non-oxidative branch(GO:0009052) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.2 | GO:0010005 | cortical microtubule, transverse to long axis(GO:0010005) |
0.0 | 0.2 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
0.0 | 0.1 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
0.0 | 0.1 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.0 | 0.1 | GO:0000813 | ESCRT I complex(GO:0000813) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.1 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
0.0 | 0.6 | GO:0016759 | cellulose synthase activity(GO:0016759) |
0.0 | 0.5 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
0.1 | 0.4 | GO:0004165 | dodecenoyl-CoA delta-isomerase activity(GO:0004165) |
0.0 | 0.4 | GO:0019209 | MAP kinase kinase activity(GO:0004708) kinase activator activity(GO:0019209) protein kinase activator activity(GO:0030295) |
0.1 | 0.2 | GO:0047150 | S-adenosylmethionine-homocysteine S-methyltransferase activity(GO:0008898) betaine-homocysteine S-methyltransferase activity(GO:0047150) |
0.1 | 0.2 | GO:0019166 | trans-2-enoyl-CoA reductase (NADPH) activity(GO:0019166) |
0.0 | 0.2 | GO:0004781 | sulfate adenylyltransferase (ATP) activity(GO:0004781) |
0.0 | 0.2 | GO:0004751 | ribose-5-phosphate isomerase activity(GO:0004751) |
0.0 | 0.2 | GO:0050378 | UDP-glucuronate 4-epimerase activity(GO:0050378) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.0 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.3 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |