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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G13790
Z-value: 2.43
Transcription factors associated with AT5G13790
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G13790
|
AT5G13790 | AGAMOUS-like 15 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AGL15 | arTal_v1_Chr5_-_4450864_4450958 | 0.23 | 4.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_1693548_1693548 Show fit | 2.83 |
AT3G05727.1
|
S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family |
|
| arTal_v1_Chr3_-_23334034_23334034 Show fit | 2.36 |
AT3G63160.1
|
outer envelope membrane protein |
|
| arTal_v1_Chr3_+_10547441_10547441 Show fit | 2.17 |
AT3G28290.1
|
transmembrane protein, putative (DUF677) |
|
| arTal_v1_Chr4_+_15451988_15451988 Show fit | 2.17 |
AT4G31940.1
|
cytochrome P450, family 82, subfamily C, polypeptide 4 |
|
| arTal_v1_Chr1_-_10289666_10289666 Show fit | 2.06 |
AT1G29395.1
|
COLD REGULATED 314 INNER MEMBRANE 1 |
|
| arTal_v1_Chr5_+_17987591_17987591 Show fit | 2.02 |
AT5G44590.2
AT5G44590.1 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 1.99 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr1_-_23246949_23246949 Show fit | 1.96 |
AT1G62770.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
| arTal_v1_Chr2_-_19370478_19370478 Show fit | 1.90 |
AT2G47180.1
|
galactinol synthase 1 |
|
| arTal_v1_Chr3_-_7796310_7796460 Show fit | 1.86 |
AT3G22120.1
AT3G22120.2 |
cell wall-plasma membrane linker protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G13790
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 18.6 | GO:0006468 | protein phosphorylation(GO:0006468) |
| 0.2 | 6.8 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.1 | 5.6 | GO:0018105 | peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209) |
| 1.0 | 5.1 | GO:0010201 | response to continuous far red light stimulus by the high-irradiance response system(GO:0010201) |
| 0.0 | 5.1 | GO:0046686 | response to cadmium ion(GO:0046686) |
| 1.0 | 5.0 | GO:0032410 | negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960) |
| 0.1 | 5.0 | GO:0006730 | one-carbon metabolic process(GO:0006730) |
| 0.2 | 4.6 | GO:0007602 | phototransduction(GO:0007602) red, far-red light phototransduction(GO:0009585) |
| 0.3 | 4.4 | GO:0010044 | response to aluminum ion(GO:0010044) |
| 0.1 | 4.4 | GO:0072596 | protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 53.7 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.0 | 24.1 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 10.2 | GO:0005773 | vacuole(GO:0005773) |
| 0.1 | 7.0 | GO:0016604 | nuclear body(GO:0016604) |
| 0.3 | 5.5 | GO:0009898 | cytoplasmic side of plasma membrane(GO:0009898) |
| 0.0 | 5.5 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 5.0 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 3.7 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.2 | 3.6 | GO:0031354 | intrinsic component of plastid outer membrane(GO:0031354) integral component of plastid outer membrane(GO:0031355) intrinsic component of chloroplast outer membrane(GO:0031358) integral component of chloroplast outer membrane(GO:0031359) |
| 0.1 | 3.4 | GO:0005875 | microtubule associated complex(GO:0005875) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 19.8 | GO:0004672 | protein kinase activity(GO:0004672) |
| 0.0 | 14.3 | GO:0008270 | zinc ion binding(GO:0008270) |
| 0.8 | 7.5 | GO:0009882 | blue light photoreceptor activity(GO:0009882) |
| 0.0 | 7.4 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.5 | 4.9 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 0.0 | 4.9 | GO:0016887 | ATPase activity(GO:0016887) |
| 0.1 | 4.4 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.1 | 4.2 | GO:0016881 | acid-amino acid ligase activity(GO:0016881) |
| 0.1 | 4.2 | GO:0010857 | calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857) |
| 0.1 | 4.2 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 2.5 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.2 | 1.0 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.2 | 0.9 | PID BARD1 PATHWAY | BARD1 signaling events |
| 0.1 | 0.8 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.7 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.1 | 0.7 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.1 | 0.6 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.1 | 0.6 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
| 0.2 | 0.5 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.1 | 0.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 2.5 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.2 | 1.7 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.0 | 1.6 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.4 | 1.2 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.1 | 1.2 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.3 | 1.0 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.2 | 0.7 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.2 | 0.7 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.2 | 0.7 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.1 | 0.6 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |