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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G13180
Z-value: 1.35
Transcription factors associated with AT5G13180
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G13180
|
AT5G13180 | NAC domain containing protein 83 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC083 | arTal_v1_Chr5_+_4196256_4196256 | -0.56 | 3.6e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 2.16 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr5_+_16441808_16441808 Show fit | 2.09 |
AT5G41080.2
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 2.08 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr5_+_16441655_16441655 Show fit | 2.05 |
AT5G41080.1
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr3_-_11194897_11194993 Show fit | 1.85 |
AT3G29250.2
AT3G29250.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr1_-_4835089_4835089 Show fit | 1.83 |
AT1G14120.2
AT1G14120.1 AT1G14120.3 |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr4_-_14827211_14827211 Show fit | 1.83 |
AT4G30280.1
|
xyloglucan endotransglucosylase/hydrolase 18 |
|
| arTal_v1_Chr4_-_7421828_7421828 Show fit | 1.76 |
AT4G12520.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_+_6832650_6832650 Show fit | 1.70 |
AT4G11210.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 1.67 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G13180
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 7.5 | GO:0010200 | response to chitin(GO:0010200) |
| 0.5 | 6.2 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.1 | 5.2 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 4.5 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 1.0 | 4.1 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.1 | 3.4 | GO:0010345 | suberin biosynthetic process(GO:0010345) |
| 0.1 | 3.3 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.5 | 2.9 | GO:0006567 | threonine catabolic process(GO:0006567) |
| 0.2 | 2.6 | GO:0006032 | aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072) |
| 0.1 | 2.2 | GO:0045168 | cell-cell signaling involved in cell fate commitment(GO:0045168) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 52.7 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 8.6 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 6.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 6.2 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 4.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 3.5 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 3.1 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 2.3 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 2.2 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.2 | 1.7 | GO:0048226 | Casparian strip(GO:0048226) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 6.7 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.1 | 5.8 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.2 | 4.8 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.3 | 4.3 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.5 | 3.9 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.4 | 3.1 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.6 | 2.9 | GO:0004793 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
| 0.1 | 2.8 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.1 | 2.7 | GO:0005179 | hormone activity(GO:0005179) |
| 0.1 | 2.5 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 6.3 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.2 | 1.3 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.3 | 1.0 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.2 | 0.7 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.1 | 0.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.2 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.0 | 0.2 | PID P73PATHWAY | p73 transcription factor network |
| 0.0 | 0.2 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.0 | 0.1 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.1 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 6.5 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.2 | 0.8 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.2 | 0.7 | REACTOME NOD1 2 SIGNALING PATHWAY | Genes involved in NOD1/2 Signaling Pathway |
| 0.1 | 0.4 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.3 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.3 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.0 | 0.3 | REACTOME NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Neurotransmitter Release Cycle |
| 0.1 | 0.2 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.1 | 0.2 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.0 | 0.1 | REACTOME G1 PHASE | Genes involved in G1 Phase |