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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G13080
Z-value: 2.02
Transcription factors associated with AT5G13080
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G13080
|
AT5G13080 | WRKY DNA-binding protein 75 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY75 | arTal_v1_Chr5_-_4151201_4151201 | -0.21 | 4.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_17712290_17712330 Show fit | 6.08 |
AT2G42540.2
AT2G42540.4 AT2G42540.1 AT2G42540.3 |
cold-regulated 15a |
|
| arTal_v1_Chr5_+_5209717_5209717 Show fit | 5.16 |
AT5G15960.1
|
stress-responsive protein (KIN1) / stress-induced protein (KIN1) |
|
| arTal_v1_Chr2_+_538250_538250 Show fit | 4.16 |
AT2G02120.1
|
Scorpion toxin-like knottin superfamily protein |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 3.88 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr1_-_10289666_10289666 Show fit | 3.68 |
AT1G29395.1
|
COLD REGULATED 314 INNER MEMBRANE 1 |
|
| arTal_v1_Chr5_+_20151163_20151163 Show fit | 3.39 |
AT5G49640.1
|
hypothetical protein |
|
| arTal_v1_Chr4_-_7401951_7401951 Show fit | 3.38 |
AT4G12470.1
|
azelaic acid induced 1 |
|
| arTal_v1_Chr5_-_22712441_22712441 Show fit | 3.21 |
AT5G56080.1
|
nicotianamine synthase 2 |
|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 2.94 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr4_-_7406994_7406994 Show fit | 2.88 |
AT4G12480.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G13080
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 17.2 | GO:0006412 | translation(GO:0006412) |
| 0.2 | 13.9 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.3 | 12.2 | GO:0055072 | iron ion homeostasis(GO:0055072) |
| 0.1 | 10.9 | GO:0018105 | peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209) |
| 0.2 | 10.1 | GO:0006972 | hyperosmotic response(GO:0006972) |
| 0.5 | 9.8 | GO:0090056 | regulation of chlorophyll metabolic process(GO:0090056) |
| 0.2 | 9.4 | GO:0002181 | cytoplasmic translation(GO:0002181) |
| 0.2 | 7.8 | GO:0000027 | ribosomal large subunit assembly(GO:0000027) |
| 0.0 | 7.6 | GO:0010498 | proteasomal protein catabolic process(GO:0010498) |
| 0.8 | 7.5 | GO:0009819 | drought recovery(GO:0009819) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 158.3 | GO:0005829 | cytosol(GO:0005829) |
| 0.1 | 44.4 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.0 | 37.4 | GO:0009536 | plastid(GO:0009536) |
| 0.0 | 29.4 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.1 | 22.9 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.1 | 18.3 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 17.6 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 15.2 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.0 | 15.0 | GO:0030054 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.2 | 13.9 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 34.8 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.1 | 28.6 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.1 | 23.2 | GO:0043531 | ADP binding(GO:0043531) |
| 0.1 | 23.1 | GO:0008270 | zinc ion binding(GO:0008270) |
| 0.1 | 21.1 | GO:0042802 | identical protein binding(GO:0042802) |
| 0.2 | 16.3 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.1 | 11.8 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.2 | 9.9 | GO:0010857 | calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857) |
| 0.3 | 9.1 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.1 | 9.1 | GO:0043492 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 3.9 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
| 0.5 | 2.6 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
| 0.4 | 1.6 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.1 | 1.3 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.4 | 1.2 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.3 | 1.2 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.1 | 1.0 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.3 | 0.9 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 0.9 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.3 | 0.8 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.7 | 5.1 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.2 | 4.3 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.9 | 3.7 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.6 | 3.3 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.7 | 2.9 | REACTOME PROLONGED ERK ACTIVATION EVENTS | Genes involved in Prolonged ERK activation events |
| 0.7 | 2.8 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 0.2 | 2.8 | REACTOME HIV LIFE CYCLE | Genes involved in HIV Life Cycle |
| 0.3 | 2.4 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
| 0.1 | 2.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 2.0 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |