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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G12870
Z-value: 0.50
Transcription factors associated with AT5G12870
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G12870
|
AT5G12870 | myb domain protein 46 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB46 | arTal_v1_Chr5_-_4065075_4065075 | 0.17 | 5.5e-01 | Click! |
Activity profile of AT5G12870 motif
Sorted Z-values of AT5G12870 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| Chr2_-_15560755 | 0.82 |
AT2G37040.1
|
PAL1
|
PHE ammonia lyase 1 |
| Chr1_-_28302728 | 0.80 |
AT1G75410.3
AT1G75410.1 |
BLH3
|
BEL1-like homeodomain 3 |
| Chr1_-_28302571 | 0.70 |
AT1G75410.2
|
BLH3
|
BEL1-like homeodomain 3 |
| Chr5_+_9033204 | 0.66 |
AT5G25890.1
|
IAA28
|
indole-3-acetic acid inducible 28 |
| Chr4_+_16310768 | 0.63 |
AT4G34050.1
AT4G34050.2 |
CCoAOMT1
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| Chr4_+_16310409 | 0.60 |
AT4G34050.3
|
CCoAOMT1
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| Chr3_+_16466144 | 0.46 |
AT3G45010.1
|
scpl48
|
serine carboxypeptidase-like 48 |
| Chr3_+_6744377 | 0.45 |
AT3G19450.1
|
ATCAD4
|
GroES-like zinc-binding alcohol dehydrogenase family protein |
| Chr1_+_23337167 | 0.43 |
AT1G62990.1
|
KNAT7
|
homeobox knotted-like protein |
| Chr1_-_6812757 | 0.42 |
AT1G19700.3
AT1G19700.1 |
BEL10
|
BEL1-like homeodomain 10 |
| Chr4_-_16533362 | 0.41 |
AT4G34610.1
AT4G34610.3 |
BLH6
|
BEL1-like homeodomain 6 |
| Chr4_-_16533001 | 0.40 |
AT4G34610.2
AT4G34610.4 |
BLH6
|
BEL1-like homeodomain 6 |
| Chr1_-_6811994 | 0.38 |
AT1G19700.2
|
BEL10
|
BEL1-like homeodomain 10 |
| Chr4_+_15003146 | 0.34 |
AT4G30810.1
|
scpl29
|
serine carboxypeptidase-like 29 |
| Chr1_-_6812523 | 0.32 |
AT1G19700.4
|
BEL10
|
BEL1-like homeodomain 10 |
| Chr4_-_10316886 | 0.31 |
AT4G18780.1
|
IRX1
|
cellulose synthase family protein |
| Chr4_-_16662549 | 0.29 |
AT4G34990.1
|
MYB32
|
myb domain protein 32 |
| Chr1_-_6813063 | 0.27 |
AT1G19700.5
|
BEL10
|
BEL1-like homeodomain 10 |
| Chr4_+_17369179 | 0.24 |
AT4G36870.3
AT4G36870.1 AT4G36870.4 |
BLH2
|
BEL1-like homeodomain 2 |
| Chr5_-_5741500 | 0.24 |
AT5G17420.1
|
IRX3
|
Cellulose synthase family protein |
| Chr2_+_12023940 | 0.20 |
AT2G28200.1
|
AT2G28200
|
C2H2-type zinc finger family protein |
| Chr4_+_18053360 | 0.20 |
AT4G38620.1
|
MYB4
|
myb domain protein 4 |
| Chr4_+_6883513 | 0.19 |
AT4G11310.1
|
AT4G11310
|
Papain family cysteine protease |
| Chr1_-_24171502 | 0.18 |
AT1G65060.2
AT1G65060.1 |
4CL3
|
4-coumarate:CoA ligase 3 |
| Chr2_-_7256831 | 0.15 |
AT2G16720.1
|
MYB7
|
myb domain protein 7 |
| Chr1_+_6177481 | 0.15 |
AT1G17950.1
|
MYB52
|
myb domain protein 52 |
| Chr5_+_17714390 | 0.13 |
AT5G44030.2
AT5G44030.1 |
CESA4
|
cellulose synthase A4 |
| Chr1_+_29786495 | 0.10 |
AT1G79180.2
|
MYB63
|
myb domain protein 63 |
| Chr4_+_17368915 | 0.09 |
AT4G36870.2
|
BLH2
|
BEL1-like homeodomain 2 |
| Chr1_+_29786257 | 0.07 |
AT1G79180.1
|
MYB63
|
myb domain protein 63 |
| Chr1_-_5631088 | 0.06 |
AT1G16490.1
|
MYB58
|
myb domain protein 58 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G12870
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.2 | GO:0009805 | coumarin biosynthetic process(GO:0009805) |
| 0.2 | 0.8 | GO:0019336 | phenol-containing compound catabolic process(GO:0019336) |
| 0.1 | 0.3 | GO:0010116 | positive regulation of abscisic acid biosynthetic process(GO:0010116) |
| 0.0 | 0.2 | GO:0010395 | rhamnogalacturonan I metabolic process(GO:0010395) |
| 0.0 | 0.3 | GO:0048363 | mucilage pectin metabolic process(GO:0048363) |
| 0.0 | 1.5 | GO:0048506 | regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510) |
| 0.0 | 0.2 | GO:1900384 | regulation of flavonol biosynthetic process(GO:1900384) |
| 0.0 | 0.4 | GO:0010192 | mucilage biosynthetic process(GO:0010192) |
| 0.0 | 0.2 | GO:1901348 | positive regulation of secondary cell wall biogenesis(GO:1901348) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.2 | GO:0010330 | cellulose synthase complex(GO:0010330) |
| 0.0 | 4.4 | GO:0000790 | nuclear chromatin(GO:0000790) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.2 | GO:0042409 | caffeoyl-CoA O-methyltransferase activity(GO:0042409) |
| 0.2 | 0.8 | GO:0045548 | phenylalanine ammonia-lyase activity(GO:0045548) |
| 0.0 | 4.6 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 0.5 | GO:0052747 | sinapyl alcohol dehydrogenase activity(GO:0052747) |
| 0.0 | 0.7 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 0.0 | 0.8 | GO:0004185 | serine-type carboxypeptidase activity(GO:0004185) |
| 0.0 | 0.2 | GO:0016207 | 4-coumarate-CoA ligase activity(GO:0016207) |