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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G11510
Z-value: 1.92
Transcription factors associated with AT5G11510
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G11510
|
AT5G11510 | myb domain protein 3r-4 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB3R-4 | arTal_v1_Chr5_+_3679748_3679809 | 0.21 | 4.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_19040456_19040456 Show fit | 3.19 |
AT5G46900.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_8033665_8033738 Show fit | 3.10 |
AT5G23830.1
AT5G23830.2 |
MD-2-related lipid recognition domain-containing protein |
|
| arTal_v1_Chr1_-_1527360_1527360 Show fit | 2.97 |
AT1G05250.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr1_+_1520278_1520278 Show fit | 2.59 |
AT1G05240.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr1_+_29135904_29135904 Show fit | 2.54 |
AT1G77530.1
AT1G77530.2 |
O-methyltransferase family protein |
|
| arTal_v1_Chr3_-_18525792_18525792 Show fit | 2.46 |
AT3G49960.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr5_-_14213293_14213293 Show fit | 2.30 |
AT5G36140.1
|
cytochrome P450, family 716, subfamily A, polypeptide 2 |
|
| arTal_v1_Chr3_-_11194897_11194993 Show fit | 2.29 |
AT3G29250.2
AT3G29250.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr3_-_17008528_17008528 Show fit | 2.17 |
AT3G46280.1
|
kinase-like protein |
|
| arTal_v1_Chr5_-_8167776_8167776 Show fit | 2.17 |
AT5G24140.1
|
squalene monooxygenase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G11510
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 6.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.4 | 5.9 | GO:0015865 | purine nucleotide transport(GO:0015865) |
| 0.9 | 4.4 | GO:0006569 | tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218) |
| 0.0 | 3.7 | GO:0032259 | methylation(GO:0032259) |
| 0.9 | 3.4 | GO:0006097 | glyoxylate cycle(GO:0006097) |
| 0.3 | 2.9 | GO:0000304 | response to singlet oxygen(GO:0000304) |
| 0.0 | 2.9 | GO:0000226 | microtubule cytoskeleton organization(GO:0000226) |
| 0.3 | 2.7 | GO:1904668 | positive regulation of ubiquitin protein ligase activity(GO:1904668) |
| 0.1 | 2.6 | GO:0006833 | water transport(GO:0006833) fluid transport(GO:0042044) |
| 0.1 | 2.6 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 26.8 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 21.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 14.1 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 3.5 | GO:0005740 | mitochondrial envelope(GO:0005740) |
| 0.2 | 3.1 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.5 | 2.7 | GO:0033597 | mitotic checkpoint complex(GO:0033597) |
| 0.7 | 2.6 | GO:0032133 | chromosome passenger complex(GO:0032133) |
| 0.2 | 2.1 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.6 | 1.9 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.0 | 1.8 | GO:0016604 | nuclear body(GO:0016604) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.1 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.6 | 5.9 | GO:0005471 | ATP:ADP antiporter activity(GO:0005471) |
| 0.1 | 5.6 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 5.5 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.1 | 4.0 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.0 | 4.0 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.1 | 3.8 | GO:0005496 | steroid binding(GO:0005496) |
| 0.1 | 3.5 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 0.3 | 2.9 | GO:0008113 | peptide-methionine (S)-S-oxide reductase activity(GO:0008113) |
| 0.0 | 2.9 | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds(GO:0004553) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.6 | PID NOTCH PATHWAY | Notch signaling pathway |
| 0.1 | 0.5 | PID PLK1 PATHWAY | PLK1 signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.5 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
| 0.0 | 0.4 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.3 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.0 | 0.3 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |