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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G11260
Z-value: 3.64
Transcription factors associated with AT5G11260
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G11260
|
AT5G11260 | Basic-leucine zipper (bZIP) transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HY5 | arTal_v1_Chr5_-_3595003_3595073 | -0.80 | 5.7e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 9.14 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 9.11 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr2_+_15706285_15706285 Show fit | 7.31 |
AT2G37430.1
|
C2H2 and C2HC zinc fingers superfamily protein |
|
| arTal_v1_Chr1_+_22628264_22628409 Show fit | 7.08 |
AT1G61340.1
AT1G61340.2 |
F-box family protein |
|
| arTal_v1_Chr2_-_14863412_14863412 Show fit | 6.92 |
AT2G35300.1
|
Late embryogenesis abundant protein, group 1 protein |
|
| arTal_v1_Chr2_+_17137829_17137846 Show fit | 6.85 |
AT2G41100.4
AT2G41100.7 |
Calcium-binding EF hand family protein |
|
| arTal_v1_Chr5_+_4488476_4488476 Show fit | 6.83 |
AT5G13930.1
|
Chalcone and stilbene synthase family protein |
|
| arTal_v1_Chr2_+_17137427_17137431 Show fit | 6.74 |
AT2G41100.5
AT2G41100.6 |
Calcium-binding EF hand family protein |
|
| arTal_v1_Chr5_-_216773_216773 Show fit | 6.46 |
AT5G01550.1
|
lectin receptor kinase a4.1 |
|
| arTal_v1_Chr2_+_17138065_17138065 Show fit | 6.45 |
AT2G41100.1
|
Calcium-binding EF hand family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G11260
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 64.8 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 3.2 | 32.5 | GO:0009652 | thigmotropism(GO:0009652) |
| 0.2 | 21.1 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 14.9 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.4 | 12.6 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 0.2 | 8.8 | GO:0009813 | flavonoid biosynthetic process(GO:0009813) |
| 0.2 | 7.9 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 2.4 | 7.3 | GO:0010045 | response to nickel cation(GO:0010045) |
| 0.7 | 7.1 | GO:0009961 | response to 1-aminocyclopropane-1-carboxylic acid(GO:0009961) |
| 0.0 | 6.9 | GO:0048868 | pollen tube development(GO:0048868) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 28.7 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.1 | 17.8 | GO:0048046 | apoplast(GO:0048046) |
| 0.4 | 7.5 | GO:0009986 | cell surface(GO:0009986) |
| 0.1 | 6.8 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.9 | 6.2 | GO:0042406 | extrinsic component of endoplasmic reticulum membrane(GO:0042406) |
| 0.0 | 5.6 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 5.0 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 5.0 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 4.9 | GO:0005730 | nucleolus(GO:0005730) |
| 0.1 | 4.6 | GO:0031201 | SNARE complex(GO:0031201) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 53.9 | GO:0005509 | calcium ion binding(GO:0005509) |
| 2.5 | 14.9 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.0 | 11.9 | GO:0001067 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 1.5 | 7.5 | GO:0005544 | calcium-dependent phospholipid binding(GO:0005544) |
| 0.0 | 6.4 | GO:0016757 | transferase activity, transferring glycosyl groups(GO:0016757) |
| 0.0 | 6.1 | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0016616) |
| 0.0 | 6.1 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.9 | 6.0 | GO:0045431 | flavonol synthase activity(GO:0045431) |
| 0.1 | 5.7 | GO:0016706 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors(GO:0016706) |
| 1.0 | 5.2 | GO:0010295 | (+)-abscisic acid 8'-hydroxylase activity(GO:0010295) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 2.7 | REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA | Genes involved in Processing of Capped Intron-Containing Pre-mRNA |
| 0.2 | 1.9 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |