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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G10510

Z-value: 0.97

Transcription factors associated with AT5G10510

Gene Symbol Gene ID Gene Info
AT5G10510 AINTEGUMENTA-like 6

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AIL6arTal_v1_Chr5_+_3315401_3315529-0.705.0e-03Click!

Activity profile of AT5G10510 motif

Sorted Z-values of AT5G10510 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_-_7656053 1.43 AT3G21720.1
isocitrate lyase
Chr4_-_3065294 1.33 AT4G06477.1

Chr2_+_3618058 1.32 AT2G08986.1
hypothetical protein
Chr1_+_6697874 1.28 AT1G19380.1
sugar, putative (DUF1195)
Chr4_-_13460105 0.92 AT4G26690.1
PLC-like phosphodiesterase family protein
Chr5_-_1034686 0.85 AT5G03860.1
malate synthase
Chr5_-_1034973 0.83 AT5G03860.2
malate synthase
Chr4_-_3950602 0.82 AT4G06700.1

Chr5_+_20820068 0.81 AT5G51210.1
oleosin3
Chr5_+_11701226 0.77 AT5G31770.1

Chr5_+_9206375 0.73 AT5G26270.2
AT5G26270.1
transmembrane protein
Chr4_+_5668435 0.73 AT4G08868.1
hypothetical protein
Chr5_+_1672070 0.71 AT5G05600.1
AT5G05600.2
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr2_+_2358727 0.61 AT2G06045.1

Chr4_-_13683594 0.60 AT4G27330.1
sporocyteless (SPL)
Chr3_+_8309209 0.60 AT3G23250.1
AT3G23250.2
myb domain protein 15
Chr1_-_30222769 0.59 AT1G80390.1
indole-3-acetic acid inducible 15
Chr4_+_14920376 0.59 AT4G30530.1
Class I glutamine amidotransferase-like superfamily protein
Chr5_+_2680401 0.59 AT5G08330.1
TCP family transcription factor
Chr2_-_10585216 0.57 AT2G24850.1
tyrosine aminotransferase 3
Chr5_-_6838011 0.57 AT5G20260.3
Exostosin family protein
Chr2_+_7782712 0.56 AT2G17920.1
nucleic acid binding / zinc ion binding protein
Chr1_+_19935163 0.56 AT1G53430.2
Leucine-rich repeat transmembrane protein kinase
Chr1_+_19934987 0.56 AT1G53430.1
Leucine-rich repeat transmembrane protein kinase
Chr2_+_19570040 0.56 AT2G47780.1
Rubber elongation factor protein (REF)
Chr4_-_10853533 0.55 AT4G20050.7
Pectin lyase-like superfamily protein
Chr5_-_6839587 0.55 AT5G20260.2
AT5G20260.1
Exostosin family protein
Chr4_-_10854065 0.55 AT4G20050.6
Pectin lyase-like superfamily protein
Chr4_-_10853346 0.55 AT4G20050.1
Pectin lyase-like superfamily protein
Chr4_-_10852303 0.55 AT4G20050.3
AT4G20050.2
AT4G20050.4
AT4G20050.5
Pectin lyase-like superfamily protein
Chr3_+_8581446 0.54 AT3G23800.1
selenium-binding protein 3
Chr5_-_10553612 0.52 AT5G28545.1

Chr4_-_14619573 0.52 AT4G29900.2
AT4G29900.1
autoinhibited Ca(2+)-ATPase 10
Chr3_-_8517790 0.52 AT3G23660.2
Sec23/Sec24 protein transport family protein
Chr3_+_6843662 0.52 AT3G19700.1
Leucine-rich repeat protein kinase family protein
Chr3_-_8517944 0.52 AT3G23660.1
Sec23/Sec24 protein transport family protein
Chr2_-_14051400 0.50 AT2G33150.1
peroxisomal 3-ketoacyl-CoA thiolase 3
Chr5_+_10162783 0.50 AT5G28180.1
Galactose oxidase/kelch repeat superfamily protein
Chr1_+_27441981 0.50 AT1G72940.1
Toll-Interleukin-Resistance (TIR) domain-containing protein
Chr4_+_5001485 0.49 AT4G08096.1

Chr2_+_1493009 0.49 AT2G04300.2
AT2G04300.1
Leucine-rich repeat protein kinase family protein
Chr3_+_8581890 0.48 AT3G23800.2
selenium-binding protein 3
Chr2_-_17867572 0.47 AT2G42955.1
F-box/LRR protein
Chr2_-_12286842 0.47 AT2G28640.1
exocyst subunit exo70 family protein H5
Chr2_-_5520081 0.47 AT2G13300.1

Chr1_+_4934120 0.47 AT1G14430.1
glyoxal oxidase-related protein
Chr3_+_12852502 0.46 AT3G31630.1

Chr3_-_13287540 0.46 AT3G32360.1

Chr5_-_8154710 0.46 AT5G24110.1
WRKY DNA-binding protein 30
Chr3_-_12294137 0.46 AT3G30710.1

Chr5_+_22581694 0.46 AT5G55800.1
Cysteine/Histidine-rich C1 domain family protein
Chr2_-_2527757 0.45 AT2G06400.1

Chr4_+_14215473 0.45 AT4G28780.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_+_3001664 0.44 AT4G05632.1
hypothetical protein
Chr3_+_11883825 0.43 AT3G30240.1

Chr4_-_17059627 0.43 AT4G36070.2
AT4G36070.1
calcium-dependent protein kinase 18
Chr3_+_15262136 0.43 AT3G43307.1

Chr3_-_15999922 0.42 AT3G44325.1

Chr2_-_3312651 0.42 AT2G07687.1
Cytochrome c oxidase, subunit III
Chr4_+_14333528 0.42 AT4G29090.1
Ribonuclease H-like superfamily protein
Chr1_-_7076619 0.42 AT1G20400.1
hypothetical protein (DUF1204)
Chr1_-_15821323 0.42 AT1G42350.1

Chr3_-_14000072 0.41 AT3G33172.1

Chr1_-_24668850 0.41 AT1G66210.1
Subtilisin-like serine endopeptidase family protein
Chr3_+_13581147 0.40 AT3G33055.1

Chr4_+_3924576 0.40 AT4G06692.1

Chr1_+_21488716 0.40 AT1G58055.1
Defensin-like (DEFL) family protein
Chr5_+_2530834 0.40 AT5G07930.3
AT5G07930.1
AT5G07930.2
MEI2 C-terminal RRM only like 2
Chr1_-_18971576 0.40 AT1G51175.1

Chr2_+_18875736 0.40 AT2G45870.3
AT2G45870.1
AT2G45870.2
Bestrophin-like protein
Chr1_+_18860837 0.39 AT1G50880.1
F-box and associated interaction domains-containing protein
Chr3_-_23166979 0.39 AT3G62640.1
DUF3511 domain protein (DUF3511)
Chr2_-_3726114 0.39 AT2G09860.1

Chr3_-_14384179 0.39 AT3G42220.1

Chr5_+_9584092 0.39 AT5G27230.1
Frigida-like protein
Chr2_+_9284391 0.39 AT2G21770.1
cellulose synthase A9
Chr4_-_3716142 0.38 AT4G06609.1

Chr4_-_4458842 0.38 AT4G07666.1
hypothetical protein
Chr2_-_2422450 0.38 AT2G06180.1

Chr1_-_7940625 0.38 AT1G22490.2
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr2_+_723565 0.38 AT2G02630.1
Cysteine/Histidine-rich C1 domain family protein
Chr3_+_12288029 0.38 AT3G30711.1

Chr5_+_16700028 0.38 AT5G41755.1

Chr4_-_5092797 0.38 AT4G08120.1

Chr1_+_7065494 0.38 AT1G20390.1

Chr5_+_11291092 0.38 AT5G29635.1

Chr5_+_19966799 0.38 AT5G49260.1
hypothetical protein
Chr3_+_11737049 0.38 AT3G29830.2
AT3G29830.1
F-box/RNI-like superfamily protein
Chr4_+_4788454 0.37 AT4G07945.1

Chr1_+_20796340 0.37 AT1G55650.1
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein
Chr5_-_19533390 0.37 AT5G48170.1
F-box family protein
Chr2_-_2743438 0.37 AT2G06830.1

Chr4_-_4946775 0.37 AT4G08072.1

Chr5_+_12190079 0.37 AT5G32520.1

Chr2_-_4818142 0.37 AT2G11940.1

Chr2_+_4256189 0.37 AT2G10820.1

Chr3_-_8229619 0.37 AT3G23120.1
receptor like protein 38
Chr2_+_5694381 0.37 AT2G13680.1
callose synthase 5
Chr1_-_24718050 0.37 AT1G66300.2
AT1G66300.1
F-box/RNI-like/FBD-like domains-containing protein
Chr3_-_11878458 0.36 AT3G30220.1
hypothetical protein
Chr4_-_5308612 0.36 AT4G08375.1

Chr3_-_15232108 0.36 AT3G43291.1
hypothetical protein
Chr4_+_1997562 0.36 AT4G04150.1

Chr3_+_13241231 0.36 AT3G32290.1

Chr3_-_14254269 0.36 AT3G42060.1
myosin heavy chain-like protein
Chr1_+_564018 0.36 AT1G02640.1
beta-xylosidase 2
Chr2_-_8348431 0.36 AT2G19230.1
AT2G19230.2
Leucine-rich repeat transmembrane protein kinase protein
Chr2_+_2475752 0.36 AT2G06290.1

Chr1_+_29521770 0.36 AT1G78470.1
F-box/LRR protein
Chr5_+_14546924 0.36 AT5G36900.1
hypothetical protein
Chr1_+_13153583 0.35 AT1G35617.1
hypothetical protein
Chr2_-_4094102 0.35 AT2G10540.1

Chr3_-_10922630 0.34 AT3G28915.1

Chr1_+_11518418 0.34 AT1G32040.1

Chr5_+_16656708 0.34 AT5G41660.1
transmembrane protein
Chr2_-_7228819 0.34 AT2G16670.1

Chr2_-_4756899 0.34 AT2G11820.1

Chr1_-_21080423 0.34 AT1G56300.1
AT1G56300.2
Chaperone DnaJ-domain superfamily protein
Chr3_+_14564581 0.34 AT3G42434.1

Chr4_-_3958339 0.34 AT4G06702.1

Chr4_-_9081245 0.34 AT4G16024.1
hypothetical protein
Chr1_-_26837991 0.33 AT1G71200.3
AT1G71200.2
AT1G71200.1
AT1G71200.4
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_-_15927549 0.33 AT5G39770.1
Restriction endonuclease, type II-like superfamily protein
Chr3_+_15687554 0.33 AT3G43833.1
hypothetical protein
Chr1_-_13921504 0.33 AT1G36763.1

Chr1_+_13720795 0.33 AT1G36420.1

Chr5_+_18785672 0.33 AT5G46310.1
WRKY family transcription factor
Chr2_+_6287289 0.32 AT2G14692.1
hypothetical protein
Chr1_+_13324970 0.32 AT1G35840.1

Chr3_+_15900795 0.32 AT3G44180.1
syntaxin-related family protein
Chr4_-_31426 0.32 AT4G00070.1
AT4G00070.2
RING/U-box superfamily protein
Chr4_+_1920423 0.32 AT4G04000.1

Chr4_-_12062757 0.32 AT4G23010.2
AT4G23010.1
AT4G23010.3
UDP-galactose transporter 2
Chr5_+_22571645 0.32 AT5G55770.1
Cysteine/Histidine-rich C1 domain family protein
Chr2_-_2597780 0.32 AT2G06540.1

Chr1_-_7479033 0.32 AT1G21350.2
AT1G21350.4
AT1G21350.1
AT1G21350.3
Thioredoxin superfamily protein
Chr3_-_11881788 0.32 AT3G30230.1
myosin heavy chain-like protein
Chr1_+_22011305 0.32 AT1G59820.1
aminophospholipid ATPase 3
Chr3_+_14853372 0.32 AT3G42750.1

Chr2_+_2753443 0.31 AT2G06845.1
Beta-galactosidase related protein
Chr1_-_1022108 0.31 AT1G03980.2
AT1G03980.3
AT1G03980.4
phytochelatin synthase 2
Chr1_+_28209407 0.31 AT1G75160.1
DUF620 family protein (DUF620)
Chr1_+_1741204 0.31 AT1G05800.1
alpha/beta-Hydrolases superfamily protein
Chr2_-_13576381 0.31 AT2G31920.1
elongation factor 1-delta, putative (DUF936)
Chr1_+_15160610 0.31 AT1G40113.1

Chr2_+_6700881 0.31 AT2G15380.1

Chr5_+_2938193 0.31 AT5G09440.1
EXORDIUM like 4
Chr1_-_7479258 0.31 AT1G21350.5
Thioredoxin superfamily protein
Chr1_-_7940805 0.30 AT1G22490.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr4_+_12934562 0.30 AT4G25250.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr2_+_3959414 0.30 AT2G10300.1

Chr2_-_17989491 0.30 AT2G43270.2
AT2G43270.1
F-box and associated interaction domains-containing protein
Chr2_+_4082851 0.30 AT2G10535.1
low-molecular-weight cysteine-rich 29
Chr3_+_14167164 0.30 AT3G39935.1

Chr1_-_1021276 0.29 AT1G03980.1
phytochelatin synthase 2
Chr2_+_3943496 0.29 AT2G10270.1

Chr5_+_17715687 0.29 AT5G44030.3
cellulose synthase A4
Chr2_+_4397840 0.28 AT2G11080.1

Chr5_-_19909452 0.28 AT5G49120.1
DUF581 family protein, putative (DUF581)
Chr1_+_25365370 0.28 AT1G67670.1
hypothetical protein
Chr4_-_4126048 0.28 AT4G07327.1

Chr5_+_12784839 0.28 AT5G33806.1
hypothetical protein
Chr4_-_13095935 0.28 AT4G25700.3
AT4G25700.2
AT4G25700.1
beta-hydroxylase 1
Chr2_+_4361869 0.28 AT2G11010.1
hypothetical protein
Chr4_+_3404979 0.27 AT4G06547.1

Chr3_+_9519741 0.27 AT3G26040.1
HXXXD-type acyl-transferase family protein
Chr2_+_5829485 0.27 AT2G13895.1
Cysteine/Histidine-rich C1 domain family protein
Chr5_+_13569958 0.27 AT5G35348.1

Chr4_-_3611806 0.27 AT4G06589.1

Chr3_-_13473530 0.27 AT3G32914.1

Chr3_+_15105385 0.27 AT3G43128.1

Chr3_-_12804796 0.27 AT3G31442.1

Chr5_+_12195731 0.27 AT5G32540.1

Chr5_-_12251643 0.27 AT5G32600.1

Chr3_-_16671931 0.27 AT3G45446.1

Chr4_+_11736472 0.26 AT4G22170.1
F-box protein (DUF295)
Chr5_-_18929493 0.26 AT5G46645.1

Chr2_+_15769086 0.26 AT2G37590.1
DNA binding with one finger 2.4
Chr2_+_5298299 0.26 AT2G12910.1

Chr3_+_12694627 0.26 AT3G31320.1

Chr4_+_3935823 0.26 AT4G06696.1

Chr4_-_6919316 0.26 AT4G11375.1

Chr4_-_4542994 0.25 AT4G07742.1

Chr3_-_14808341 0.25 AT3G42727.1

Chr3_+_13314146 0.25 AT3G32383.1

Chr1_+_21631947 0.25 AT1G58310.1
F-box/RNI-like superfamily protein
Chr5_-_1207679 0.24 AT5G04310.2
AT5G04310.3
Pectin lyase-like superfamily protein
Chr2_-_5898637 0.24 AT2G14030.1

Chr3_-_12608250 0.24 AT3G30843.1

Chr2_+_5560013 0.24 AT2G13380.1

Chr3_+_16605781 0.24 AT3G45275.1
ECA1 gametogenesis related family protein
Chr3_+_19996177 0.24 AT3G54000.1
AT3G54000.2
TIP41-like protein
Chr2_+_879247 0.24 AT2G03010.1
hypothetical protein (DUF577)
Chr4_-_1850019 0.24 AT4G03912.1

Chr5_-_11170339 0.24 AT5G29380.1

Chr5_-_1207946 0.24 AT5G04310.1
Pectin lyase-like superfamily protein
Chr1_+_27076020 0.24 AT1G71930.1
vascular related NAC-domain protein 7
Chr4_+_7869320 0.23 AT4G13540.1
golgin family A protein
Chr3_+_11676199 0.23 AT3G29781.1

Chr1_-_4508528 0.23 AT1G13200.1
F-box and associated interaction domains-containing protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G10510

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 3.1 GO:0006097 glyoxylate cycle(GO:0006097)
0.2 0.5 GO:0010124 phenylacetate catabolic process(GO:0010124)
0.1 0.6 GO:0046937 phytochelatin metabolic process(GO:0046937) phytochelatin biosynthetic process(GO:0046938) cellular response to cadmium ion(GO:0071276) cellular detoxification of cadmium ion(GO:0098849)
0.1 0.5 GO:0048281 inflorescence morphogenesis(GO:0048281)
0.1 2.6 GO:0009556 microsporogenesis(GO:0009556)
0.1 0.3 GO:0031573 intra-S DNA damage checkpoint(GO:0031573)
0.1 0.3 GO:0045332 phospholipid translocation(GO:0045332)
0.1 0.5 GO:0048533 sporocyte differentiation(GO:0048533)
0.1 0.2 GO:1902586 transport of virus in host, cell to cell(GO:0046740) multi-organism intercellular transport(GO:1902586)
0.1 0.4 GO:0090059 protoxylem development(GO:0090059)
0.1 0.9 GO:0010052 guard cell differentiation(GO:0010052)
0.1 0.3 GO:0072334 UDP-galactose transport(GO:0015785) UDP-galactose transmembrane transport(GO:0072334)
0.0 0.6 GO:0052317 camalexin biosynthetic process(GO:0010120) camalexin metabolic process(GO:0052317)
0.0 0.4 GO:0031222 arabinan catabolic process(GO:0031222)
0.0 0.2 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.0 0.3 GO:0090057 root radial pattern formation(GO:0090057)
0.0 1.0 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.0 0.8 GO:0019915 lipid storage(GO:0019915)
0.0 0.3 GO:0016123 xanthophyll biosynthetic process(GO:0016123)
0.0 0.1 GO:0040019 negative regulation of immune effector process(GO:0002698) positive regulation of abscisic acid biosynthetic process(GO:0010116) positive regulation of embryonic development(GO:0040019) negative regulation of defense response to virus(GO:0050687)
0.0 0.3 GO:0030308 negative regulation of cell growth(GO:0030308)
0.0 0.2 GO:0046466 membrane lipid catabolic process(GO:0046466)
0.0 0.2 GO:0042659 regulation of cell fate specification(GO:0042659)
0.0 0.1 GO:0031572 mitotic G2 DNA damage checkpoint(GO:0007095) G2 DNA damage checkpoint(GO:0031572) mitotic DNA damage checkpoint(GO:0044773)
0.0 0.4 GO:0043666 regulation of phosphoprotein phosphatase activity(GO:0043666)
0.0 0.2 GO:1901348 positive regulation of secondary cell wall biogenesis(GO:1901348)
0.0 0.5 GO:0009960 endosperm development(GO:0009960)
0.0 0.2 GO:0046785 microtubule polymerization(GO:0046785)
0.0 0.1 GO:0070542 response to fatty acid(GO:0070542) cellular response to fatty acid(GO:0071398)
0.0 0.2 GO:2000008 regulation of protein localization to cell surface(GO:2000008)
0.0 0.1 GO:0010304 PSII associated light-harvesting complex II catabolic process(GO:0010304)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.4 GO:0009514 glyoxysome(GO:0009514)
0.1 0.3 GO:0048476 Holliday junction resolvase complex(GO:0048476)
0.1 0.2 GO:0010330 cellulose synthase complex(GO:0010330)
0.0 0.1 GO:0031932 TORC2 complex(GO:0031932)
0.0 0.4 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.0 0.5 GO:0000145 exocyst(GO:0000145)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.0 GO:0008430 selenium binding(GO:0008430)
0.1 0.6 GO:0034722 gamma-glutamyl-peptidase activity(GO:0034722)
0.1 1.4 GO:0016833 oxo-acid-lyase activity(GO:0016833)
0.1 0.6 GO:0004838 L-tyrosine:2-oxoglutarate aminotransferase activity(GO:0004838) L-tyrosine aminotransferase activity(GO:0070547)
0.1 0.3 GO:0010291 carotene beta-ring hydroxylase activity(GO:0010291)
0.1 0.3 GO:0052740 phosphatidylserine 1-acylhydrolase activity(GO:0052739) 1-acyl-2-lysophosphatidylserine acylhydrolase activity(GO:0052740)
0.1 0.9 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.1 1.1 GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer(GO:0046912)
0.1 0.5 GO:0003988 acetyl-CoA C-acyltransferase activity(GO:0003988)
0.1 0.3 GO:0005459 UDP-galactose transmembrane transporter activity(GO:0005459)
0.0 0.3 GO:0016889 endodeoxyribonuclease activity, producing 3'-phosphomonoesters(GO:0016889)
0.0 1.2 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.0 0.4 GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity(GO:0016756)
0.0 0.4 GO:0046556 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.0 1.6 GO:0004650 polygalacturonase activity(GO:0004650)
0.0 0.5 GO:0005388 calcium-transporting ATPase activity(GO:0005388)
0.0 0.3 GO:0019903 protein phosphatase binding(GO:0019903)
0.0 0.4 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.0 0.5 GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 0.3 GO:0005548 phospholipid transporter activity(GO:0005548)
0.0 0.7 GO:0004523 RNA-DNA hybrid ribonuclease activity(GO:0004523)
0.0 0.1 GO:0047780 citrate dehydratase activity(GO:0047780)
0.0 0.1 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.0 0.2 GO:0070290 phospholipase D activity(GO:0004630) N-acylphosphatidylethanolamine-specific phospholipase D activity(GO:0070290)
0.0 0.2 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 PID ECADHERIN NASCENT AJ PATHWAY E-cadherin signaling in the nascent adherens junction