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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G09410
Z-value: 5.64
Transcription factors associated with AT5G09410
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G09410
|
AT5G09410 | ethylene induced calmodulin binding protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| EICBP.B | arTal_v1_Chr5_+_2922332_2922332 | -0.45 | 1.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 11.32 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr4_+_12686459_12686459 Show fit | 9.35 |
AT4G24570.1
|
dicarboxylate carrier 2 |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 8.91 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr3_-_11194897_11194993 Show fit | 8.83 |
AT3G29250.2
AT3G29250.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr3_-_3420932_3420932 Show fit | 8.29 |
AT3G10930.1
|
hypothetical protein |
|
| arTal_v1_Chr5_-_23308680_23308680 Show fit | 8.09 |
AT5G57560.1
|
Xyloglucan endotransglucosylase/hydrolase family protein |
|
| arTal_v1_Chr5_-_14566439_14566439 Show fit | 8.00 |
AT5G36925.1
|
hypothetical protein |
|
| arTal_v1_Chr2_-_10454591_10454593 Show fit | 7.90 |
AT2G24600.2
AT2G24600.3 AT2G24600.4 AT2G24600.1 |
Ankyrin repeat family protein |
|
| arTal_v1_Chr3_+_11005638_11005638 Show fit | 7.84 |
AT3G29000.1
|
Calcium-binding EF-hand family protein |
|
| arTal_v1_Chr1_-_9649323_9649323 Show fit | 7.46 |
AT1G27730.1
|
salt tolerance zinc finger |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G09410
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 146.8 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.2 | 23.3 | GO:0010200 | response to chitin(GO:0010200) |
| 0.6 | 18.0 | GO:0009695 | jasmonic acid biosynthetic process(GO:0009695) |
| 3.1 | 15.4 | GO:0019310 | inositol catabolic process(GO:0019310) |
| 0.4 | 15.4 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.3 | 12.4 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.1 | 11.9 | GO:0010087 | phloem or xylem histogenesis(GO:0010087) |
| 1.2 | 11.8 | GO:0009961 | response to 1-aminocyclopropane-1-carboxylic acid(GO:0009961) |
| 3.5 | 10.6 | GO:0071422 | thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422) |
| 0.6 | 8.1 | GO:0051865 | protein autoubiquitination(GO:0051865) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 108.3 | GO:0005576 | extracellular region(GO:0005576) |
| 0.2 | 61.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.2 | 35.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 15.1 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.1 | 9.9 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.2 | 8.3 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.2 | 7.8 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 2.0 | 6.1 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
| 0.3 | 6.1 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.1 | 5.6 | GO:0090406 | pollen tube(GO:0090406) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 19.0 | GO:0005507 | copper ion binding(GO:0005507) |
| 3.1 | 15.4 | GO:0050113 | inositol oxygenase activity(GO:0050113) |
| 0.4 | 15.2 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.1 | 13.4 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.4 | 11.2 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 3.5 | 10.6 | GO:0015117 | thiosulfate transmembrane transporter activity(GO:0015117) |
| 0.2 | 10.3 | GO:0016706 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors(GO:0016706) |
| 0.1 | 10.3 | GO:0043531 | ADP binding(GO:0043531) |
| 0.1 | 8.8 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
| 1.7 | 8.3 | GO:0016629 | 12-oxophytodienoate reductase activity(GO:0016629) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 5.7 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 1.5 | 4.5 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.4 | 1.2 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 1.0 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.1 | 0.7 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.1 | 0.4 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.2 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 4.8 | REACTOME TRANSCRIPTION | Genes involved in Transcription |
| 1.1 | 4.5 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.5 | 4.1 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 2.2 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.5 | 1.6 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.3 | 1.2 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.0 | 0.3 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.0 | 0.2 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |