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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G08750
Z-value: 2.00
Transcription factors associated with AT5G08750
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G08750
|
AT5G08750 | RING/FYVE/PHD zinc finger superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G08750 | arTal_v1_Chr5_+_2851814_2851910 | -0.71 | 4.6e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_11194897_11194993 Show fit | 4.29 |
AT3G29250.2
AT3G29250.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr5_+_23187840_23187840 Show fit | 3.68 |
AT5G57220.1
|
cytochrome P450, family 81, subfamily F, polypeptide 2 |
|
| arTal_v1_Chr1_+_12851983_12851983 Show fit | 3.64 |
AT1G35140.1
|
Phosphate-responsive 1 family protein |
|
| arTal_v1_Chr3_-_11195171_11195171 Show fit | 3.38 |
AT3G29250.3
|
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr4_+_9759203_9759203 Show fit | 3.21 |
AT4G17500.1
|
ethylene responsive element binding factor 1 |
|
| arTal_v1_Chr5_-_8181107_8181107 Show fit | 3.02 |
AT5G24155.2
AT5G24155.3 AT5G24155.1 |
FAD/NAD(P)-binding oxidoreductase family protein |
|
| arTal_v1_Chr4_-_12143833_12143858 Show fit | 2.91 |
AT4G23190.1
AT4G23190.2 AT4G23190.3 |
cysteine-rich RLK (RECEPTOR-like protein kinase) 11 |
|
| arTal_v1_Chr4_-_17571743_17571743 Show fit | 2.88 |
AT4G37370.1
|
cytochrome P450, family 81, subfamily D, polypeptide 8 |
|
| arTal_v1_Chr3_+_10538005_10538105 Show fit | 2.82 |
AT3G28270.2
AT3G28270.1 |
transmembrane protein, putative (DUF677) |
|
| arTal_v1_Chr2_+_3618058_3618058 Show fit | 2.81 |
AT2G08986.1
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G08750
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 7.3 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
| 0.0 | 5.7 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 5.4 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.0 | 4.0 | GO:0010087 | phloem or xylem histogenesis(GO:0010087) |
| 0.6 | 3.7 | GO:0009759 | indole glucosinolate biosynthetic process(GO:0009759) |
| 0.5 | 3.2 | GO:0070212 | protein ADP-ribosylation(GO:0006471) regulation of starch biosynthetic process(GO:0010581) protein poly-ADP-ribosylation(GO:0070212) |
| 0.1 | 3.0 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
| 0.1 | 3.0 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.3 | 2.5 | GO:0031222 | arabinan catabolic process(GO:0031222) |
| 0.0 | 2.5 | GO:0006470 | protein dephosphorylation(GO:0006470) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 2.5 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 2.2 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.7 | 2.1 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.0 | 1.9 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 1.7 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.1 | 1.1 | GO:0000786 | nucleosome(GO:0000786) |
| 0.0 | 1.1 | GO:0005615 | extracellular space(GO:0005615) |
| 0.0 | 1.0 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 0.7 | GO:0072686 | mitotic spindle(GO:0072686) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 8.0 | GO:0005507 | copper ion binding(GO:0005507) |
| 0.0 | 5.1 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.0 | 3.8 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.8 | 3.2 | GO:0080042 | ADP-glucose pyrophosphohydrolase activity(GO:0080042) |
| 0.4 | 3.0 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.1 | 3.0 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
| 0.0 | 2.6 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.2 | 2.5 | GO:0046556 | xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556) |
| 0.2 | 2.2 | GO:0010436 | carotenoid dioxygenase activity(GO:0010436) |
| 0.2 | 2.2 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.0 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.2 | 0.6 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.9 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 1.0 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.6 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |