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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G08750

Z-value: 2.00

Transcription factors associated with AT5G08750

Gene Symbol Gene ID Gene Info
AT5G08750
AT5G08750 RING/FYVE/PHD zinc finger superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT5G08750arTal_v1_Chr5_+_2851814_2851910-0.714.6e-03Click!

Activity profile of AT5G08750 motif

Sorted Z-values of AT5G08750 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_-_11194897 4.29 AT3G29250.2
AT3G29250.1
SDR4
NAD(P)-binding Rossmann-fold superfamily protein
Chr5_+_23187840 3.68 AT5G57220.1
CYP81F2
cytochrome P450, family 81, subfamily F, polypeptide 2
Chr1_+_12851983 3.64 AT1G35140.1
PHI-1
Phosphate-responsive 1 family protein
Chr3_-_11195171 3.38 AT3G29250.3
SDR4
NAD(P)-binding Rossmann-fold superfamily protein
Chr4_+_9759203 3.21 AT4G17500.1
ERF-1
ethylene responsive element binding factor 1
Chr5_-_8181107 3.02 AT5G24155.2
AT5G24155.3
AT5G24155.1
AT5G24155
FAD/NAD(P)-binding oxidoreductase family protein
Chr4_-_12143833 2.91 AT4G23190.1
AT4G23190.2
AT4G23190.3
CRK11
cysteine-rich RLK (RECEPTOR-like protein kinase) 11
Chr4_-_17571743 2.88 AT4G37370.1
CYP81D8
cytochrome P450, family 81, subfamily D, polypeptide 8
Chr3_+_10538005 2.82 AT3G28270.2
AT3G28270.1
AT3G28270
transmembrane protein, putative (DUF677)
Chr2_+_3618058 2.81 AT2G08986.1
AT2G08986
hypothetical protein
Chr1_+_26654768 2.65 AT1G70700.3
AT1G70700.2
TIFY7
TIFY domain/Divergent CCT motif family protein
Chr1_+_26654529 2.53 AT1G70700.1
TIFY7
TIFY domain/Divergent CCT motif family protein
Chr4_+_14026577 2.38 AT4G28350.1
AT4G28350
Concanavalin A-like lectin protein kinase family protein
Chr5_+_2133918 2.33 AT5G06870.1
PGIP2
polygalacturonase inhibiting protein 2
Chr5_-_17341814 2.28 AT5G43190.1
AT5G43190
Galactose oxidase/kelch repeat superfamily protein
Chr4_-_12143476 2.23 AT4G23190.4
CRK11
cysteine-rich RLK (RECEPTOR-like protein kinase) 11
Chr2_-_16359943 2.16 AT2G39200.1
MLO12
Seven transmembrane MLO family protein
Chr3_-_7656053 2.09 AT3G21720.1
ICL
isocitrate lyase
Chr5_-_20016857 2.01 AT5G49360.1
BXL1
beta-xylosidase 1
Chr1_+_786832 1.98 AT1G03220.1
AT1G03220
Eukaryotic aspartyl protease family protein
Chr4_+_18185437 1.94 AT4G39030.1
EDS5
MATE efflux family protein
Chr4_-_18275017 1.94 AT4G39260.4
AT4G39260.3
AT4G39260.2
AT4G39260.1
CCR1
cold, circadian rhythm, and RNA binding 1
Chr3_-_1261634 1.93 AT3G04640.2
AT3G04640.1
AT3G04640.3
AT3G04640
glycine-rich protein
Chr1_-_8310916 1.91 AT1G23390.1
AT1G23390
Kelch repeat-containing F-box family protein
Chr5_-_1931782 1.88 AT5G06320.1
NHL3
NDR1/HIN1-like 3
Chr3_+_3694956 1.83 AT3G11690.1
AT3G11690
hypothetical protein
Chr3_-_9712826 1.72 AT3G26510.5
AT3G26510.4
AT3G26510.1
AT3G26510.6
AT3G26510
Octicosapeptide/Phox/Bem1p family protein
Chr2_-_17441416 1.71 AT2G41810.1
AT2G41810
imidazolonepropionase (Protein of unknown function, DUF642)
Chr3_-_9712659 1.70 AT3G26510.3
AT3G26510.7
AT3G26510.2
AT3G26510
Octicosapeptide/Phox/Bem1p family protein
Chr4_+_10481619 1.68 AT4G19170.1
NCED4
nine-cis-epoxycarotenoid dioxygenase 4
Chr3_+_17867131 1.64 AT3G48240.1
AT3G48240
Octicosapeptide/Phox/Bem1p family protein
Chr4_-_3950602 1.61 AT4G06700.1
AT4G06700

Chr4_+_9906821 1.53 AT4G17810.1
AT4G17810.2
AT4G17810
C2H2 and C2HC zinc fingers superfamily protein
Chr1_+_21707175 1.50 AT1G58420.1
AT1G58420
Uncharacterized conserved protein UCP031279
Chr3_-_1860797 1.45 AT3G06145.1
AT3G06145
RING zinc finger protein
Chr5_+_26625049 1.45 AT5G66690.1
UGT72E2
UDP-Glycosyltransferase superfamily protein
Chr5_+_1949315 1.39 AT5G06380.1
AT5G06380
hypothetical protein
Chr3_+_21680027 1.34 AT3G58620.1
AT3G58620.2
TTL4
tetratricopetide-repeat thioredoxin-like 4
Chr3_-_17146867 1.34 AT3G46570.1
AT3G46570
Glycosyl hydrolase superfamily protein
Chr5_-_17331646 1.34 AT5G43170.1
ZF3
zinc-finger protein 3
Chr2_+_10072057 1.33 AT2G23690.1
AT2G23690
HTH-type transcriptional regulator
Chr4_-_16740601 1.31 AT4G35180.2
AT4G35180.1
LHT7
LYS/HIS transporter 7
Chr3_-_22278837 1.31 AT3G60270.1
AT3G60270
Cupredoxin superfamily protein
Chr1_-_25670345 1.31 AT1G68460.1
IPT1
isopentenyltransferase 1
Chr5_+_14887429 1.30 AT5G37490.1
AT5G37490
ARM repeat superfamily protein
Chr3_+_22248892 1.28 AT3G60200.1
AT3G60200
hypothetical protein
Chr1_-_24362054 1.25 AT1G65520.1
ECI1
delta(3), delta(2)-enoyl CoA isomerase 1
Chr5_-_3172701 1.23 AT5G10130.1
AT5G10130
Pollen Ole e 1 allergen and extensin family protein
Chr2_-_12149072 1.21 AT2G28400.1
AT2G28400
senescence regulator (Protein of unknown function, DUF584)
Chr3_+_2347186 1.21 AT3G07350.1
AT3G07350
sulfate/thiosulfate import ATP-binding protein, putative (DUF506)
Chr4_+_14215473 1.21 AT4G28780.1
AT4G28780
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_-_17044555 1.20 AT4G36020.3
AT4G36020.1
AT4G36020.2
CSDP1
cold shock domain protein 1
Chr5_-_23896702 1.16 AT5G59220.2
HAI1
PP2C protein (Clade A protein phosphatases type 2C)
Chr5_-_23896939 1.13 AT5G59220.1
HAI1
PP2C protein (Clade A protein phosphatases type 2C)
Chr1_-_5139467 1.12 AT1G14900.1
HMGA
high mobility group A
Chr4_+_7487225 1.10 AT4G12720.2
AT4G12720.5
AT4G12720.1
AT4G12720.4
NUDT7
MutT/nudix family protein
Chr2_-_12188293 1.10 AT2G28500.1
LBD11
LOB domain-containing protein 11
Chr4_+_13388290 1.09 AT4G26520.2
AT4G26520.1
AT4G26520.3
FBA7
Aldolase superfamily protein
Chr5_+_9667311 1.09 AT5G27370.1
AT5G27370
inactive Serine/Threonine-kinase, putative (DUF679)
Chr2_+_16782366 1.09 AT2G40180.1
PP2C5
phosphatase 2C5
Chr3_+_21982989 1.09 AT3G59480.1
AT3G59480
pfkB-like carbohydrate kinase family protein
Chr3_+_12104312 1.08 AT3G30460.2
AT3G30460.1
AT3G30460
RING/U-box superfamily protein
Chr4_+_13388719 1.08 AT4G26520.4
FBA7
Aldolase superfamily protein
Chr1_-_27119918 1.07 AT1G72070.1
AT1G72070
Chaperone DnaJ-domain superfamily protein
Chr1_+_25053673 1.07 AT1G67100.1
LBD40
LOB domain-containing protein 40
Chr1_+_11212958 1.06 AT1G31320.1
LBD4
LOB domain-containing protein 4
Chr3_-_3357754 1.05 AT3G10720.2
AT3G10720
Plant invertase/pectin methylesterase inhibitor superfamily
Chr4_+_7487543 1.04 AT4G12720.3
NUDT7
MutT/nudix family protein
Chr1_-_4551620 1.04 AT1G13290.1
DOT5
C2H2-like zinc finger protein
Chr3_+_20896332 1.04 AT3G56360.1
AT3G56360
hypothetical protein
Chr4_+_9467512 1.03 AT4G16820.1
PLA-I%7Bbeta]2
alpha/beta-Hydrolases superfamily protein
Chr5_-_5253790 1.03 AT5G16080.1
CXE17
carboxyesterase 17
Chr4_-_18173840 1.02 AT4G39000.1
GH9B17
glycosyl hydrolase 9B17
Chr2_-_14394858 1.02 AT2G34080.1
AT2G34080
Cysteine proteinases superfamily protein
Chr5_+_17154718 1.02 AT5G42780.1
HB27
homeobox protein 27
Chr3_+_12420556 1.02 AT3G30750.1
AT3G30750

Chr4_+_7487918 1.01 AT4G12720.6
NUDT7
MutT/nudix family protein
Chr5_+_1378788 1.01 AT5G04770.2
CAT6
cationic amino acid transporter 6
Chr2_+_9428743 1.01 AT2G22180.1
AT2G22180
hydroxyproline-rich glycoprotein family protein
Chr5_+_1378954 1.00 AT5G04770.3
CAT6
cationic amino acid transporter 6
Chr5_+_1378621 1.00 AT5G04770.1
CAT6
cationic amino acid transporter 6
Chr2_-_18422839 1.00 AT2G44660.1
AT2G44660
ALG6, ALG8 glycosyltransferase family
Chr3_+_17882465 1.00 AT3G48290.2
AT3G48290.1
CYP71A24
cytochrome P450, family 71, subfamily A, polypeptide 24
Chr2_-_15925887 1.00 AT2G38060.2
AT2G38060.1
PHT4%3B2
phosphate transporter 4;2
Chr1_-_371090 1.00 AT1G02070.1
AT1G02070
zinc ion-binding protein
Chr1_+_27394598 0.99 AT1G72790.1
AT1G72790
hydroxyproline-rich glycoprotein family protein
Chr5_+_23544011 0.98 AT5G58180.1
ATYKT62
Synaptobrevin family protein
Chr1_-_4034155 0.97 AT1G11940.1
AT1G11940.2
AT1G11940
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Chr3_+_18973126 0.97 AT3G51080.1
GATA6
GATA transcription factor 6
Chr3_-_18764056 0.96 AT3G50560.1
AT3G50560
NAD(P)-binding Rossmann-fold superfamily protein
Chr3_-_15617309 0.96 AT3G43720.1
LTPG2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr3_+_15480920 0.95 AT3G43571.1
AT3G43571

Chr4_+_2505979 0.93 AT4G04925.1
AT4G04925
transmembrane protein
Chr2_-_13929763 0.93 AT2G32830.1
PHT1%3B5
phosphate transporter 1;5
Chr5_+_23543652 0.93 AT5G58180.2
ATYKT62
Synaptobrevin family protein
Chr5_-_4279493 0.92 AT5G13340.1
AT5G13340
arginine/glutamate-rich 1 protein
Chr3_-_1858946 0.92 AT3G06140.1
LUL4
RING/U-box superfamily protein
Chr1_+_26182156 0.92 AT1G69600.1
ZFHD1
zinc finger homeodomain 1
Chr1_-_29249528 0.92 AT1G77780.1
AT1G77780
Glycosyl hydrolase superfamily protein
Chr1_-_29638773 0.92 AT1G78830.1
AT1G78830
Curculin-like (mannose-binding) lectin family protein
Chr2_-_3165509 0.92 AT2G07550.1
AT2G07550

Chr4_+_10021786 0.90 AT4G18050.2
ABCB9
P-glycoprotein 9
Chr3_-_15617149 0.90 AT3G43720.2
LTPG2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr3_+_20705577 0.89 AT3G55780.1
AT3G55780
Glycosyl hydrolase superfamily protein
Chr1_-_20173933 0.89 AT1G54040.3
AT1G54040.2
ESP
epithiospecifier protein
Chr1_-_20172364 0.88 AT1G54040.1
ESP
epithiospecifier protein
Chr4_+_13120824 0.88 AT4G25780.1
AT4G25780
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Chr1_+_7065494 0.87 AT1G20390.1
AT1G20390

Chr4_+_10022205 0.87 AT4G18050.1
ABCB9
P-glycoprotein 9
Chr1_+_23813943 0.86 AT1G64160.1
DIR5
Disease resistance-responsive (dirigent-like protein) family protein
Chr3_+_13581147 0.85 AT3G33055.1
AT3G33055

Chr1_+_568558 0.85 AT1G02650.2
AT1G02650.1
AT1G02650
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_-_8802890 0.85 AT3G24290.1
AMT1%3B5
ammonium transporter 1;5
Chr3_-_4227528 0.85 AT3G13140.1
AT3G13140
hydroxyproline-rich glycoprotein family protein
Chr2_-_7763018 0.85 AT2G17860.1
AT2G17860
Pathogenesis-related thaumatin superfamily protein
Chr5_-_21607297 0.84 AT5G53270.1
AT5G53270
Seed maturation protein
Chr5_+_24844248 0.84 AT5G61850.2
AT5G61850.1
LFY
floral meristem identity control protein LEAFY (LFY)
Chr5_-_16336017 0.84 AT5G40800.1
AT5G40800
hypothetical protein
Chr2_+_18718348 0.84 AT2G45420.1
LBD18
LOB domain-containing protein 18
Chr1_+_12291258 0.83 AT1G33855.1
AT1G33855

Chr4_+_16438469 0.83 AT4G34380.1
AT4G34380
Transducin/WD40 repeat-like superfamily protein
Chr2_+_12608675 0.82 AT2G29380.1
HAI3
highly ABA-induced PP2C protein 3
Chr1_+_6679281 0.82 AT1G19320.1
AT1G19320
Pathogenesis-related thaumatin superfamily protein
Chr2_-_7577846 0.81 AT2G17450.1
RHA3A
RING-H2 finger A3A
Chr2_+_14196732 0.81 AT2G33520.1
AT2G33520
cysteine-rich/transmembrane domain protein A
Chr1_-_15983488 0.80 AT1G42560.2
AT1G42560.1
MLO9
Seven transmembrane MLO family protein
Chr5_+_20233146 0.80 AT5G49790.1
AT5G49790

Chr3_+_10838395 0.79 AT3G28840.1
AT3G28840
hypothetical protein (DUF1216)
Chr5_-_7986851 0.79 AT5G23680.1
AT5G23680
Sterile alpha motif (SAM) domain-containing protein
Chr1_-_27119715 0.78 AT1G72070.2
AT1G72070
Chaperone DnaJ-domain superfamily protein
Chr4_-_8850516 0.78 AT4G15480.1
UGT84A1
UDP-Glycosyltransferase superfamily protein
Chr4_-_8666050 0.77 AT4G15200.3
AT4G15200.2
FH3
formin 3
Chr3_+_5644593 0.77 AT3G16570.1
AT3G16570.2
AT3G16570.3
RALF23
rapid alkalinization factor 23
Chr3_+_5500619 0.77 AT3G16230.12
AT3G16230
Putative eukaryotic LigT
Chr5_-_24859272 0.77 AT5G61900.3
AT5G61900.1
BON1
Calcium-dependent phospholipid-binding Copine family protein
Chr3_+_5500441 0.77 AT3G16230.11
AT3G16230
Putative eukaryotic LigT
Chr5_-_9442605 0.76 AT5G26840.1
AT5G26840
transmembrane protein
Chr2_+_4526980 0.76 AT2G11350.1
AT2G11350

Chr5_+_7342565 0.76 AT5G22150.1
AT5G22150.2
AT5G22150
transmembrane protein
Chr3_+_5501137 0.76 AT3G16230.13
AT3G16230
Putative eukaryotic LigT
Chr1_-_3966850 0.76 AT1G11740.1
AT1G11740
ankyrin repeat family protein
Chr5_+_291687 0.75 AT5G01760.1
AT5G01760
ENTH/VHS/GAT family protein
Chr5_-_26456154 0.75 AT5G66200.1
ARO2
armadillo repeat only 2
Chr2_-_18323121 0.74 AT2G44370.1
AT2G44370
Cysteine/Histidine-rich C1 domain family protein
Chr4_+_14579563 0.74 AT4G29780.1
AT4G29780
nuclease
Chr4_-_8665759 0.74 AT4G15200.1
AT4G15200.4
FH3
formin 3
Chr3_+_19089026 0.74 AT3G51440.1
AT3G51440
Calcium-dependent phosphotriesterase superfamily protein
Chr2_+_3144615 0.74 AT2G07530.1
AT2G07530

Chr3_-_3356811 0.74 AT3G10720.1
AT3G10720
Plant invertase/pectin methylesterase inhibitor superfamily
Chr4_-_4877894 0.73 AT4G08033.1
AT4G08033

Chr1_+_14313049 0.72 AT1G38149.1
AT1G38149

Chr3_+_12043707 0.72 AT3G30416.1
AT3G30416

Chr2_+_5987052 0.72 AT2G14180.1
AT2G14180

Chr2_-_986662 0.71 AT2G03250.1
AT2G03250.2
AT2G03250
EXS (ERD1/XPR1/SYG1) family protein
Chr4_-_13352463 0.70 AT4G26420.2
AT4G26420.3
AT4G26420.1
GAMT1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr2_+_16123985 0.70 AT2G38510.1
AT2G38510
MATE efflux family protein
Chr3_-_12198898 0.70 AT3G30640.1
AT3G30640

Chr4_+_16295334 0.70 AT4G34000.2
AT4G34000.4
AT4G34000.3
AT4G34000.1
ABF3
abscisic acid responsive elements-binding factor 3
Chr4_-_16484034 0.70 AT4G34480.3
AT4G34480.2
AT4G34480.1
AT4G34480
O-Glycosyl hydrolases family 17 protein
Chr1_+_21766847 0.69 AT1G58643.2
AT1G58643
Inositol-pentakisphosphate 2-kinase family protein
Chr4_-_18170949 0.69 AT4G38990.2
AT4G38990.1
GH9B16
glycosyl hydrolase 9B16
Chr1_+_8849034 0.69 AT1G25250.2
AT1G25250.3
IDD16
indeterminate(ID)-domain 16
Chr3_-_12954422 0.69 AT3G31955.1
AT3G31955

Chr3_-_23458732 0.68 AT3G63530.2
BB
RING/U-box superfamily protein
Chr1_+_8849549 0.68 AT1G25250.1
IDD16
indeterminate(ID)-domain 16
Chr5_+_10152147 0.68 AT5G28170.1
AT5G28170

Chr4_-_1539987 0.68 AT4G03460.2
AT4G03460
Ankyrin repeat family protein
Chr2_+_1671116 0.68 AT2G04770.1
AT2G04770

Chr5_-_2950695 0.68 AT5G09470.1
DIC3
dicarboxylate carrier 3
Chr4_-_3816028 0.67 AT4G06648.1
AT4G06648

Chr5_+_19397041 0.67 AT5G47910.1
RBOHD
respiratory burst oxidase homologue D
Chr3_-_7970843 0.67 AT3G22490.1
AT3G22490
Seed maturation protein
Chr4_-_14439723 0.67 AT4G29310.1
AT4G29310.2
AT4G29310
DUF1005 family protein (DUF1005)
Chr4_+_2886455 0.67 AT4G05587.1
AT4G05587

Chr5_-_18591474 0.67 AT5G45830.3
AT5G45830.2
AT5G45830.6
AT5G45830.4
AT5G45830.1
AT5G45830.5
DOG1
delay of germination 1
Chr5_-_4299264 0.67 AT5G13400.1
AT5G13400
Major facilitator superfamily protein
Chr3_+_3260141 0.67 AT3G10470.1
AT3G10470
C2H2-type zinc finger family protein
Chr2_-_5881534 0.66 AT2G13990.1
AT2G13990

Chr2_+_14658684 0.66 AT2G34740.1
AT2G34740
protein phosphatase 2C family protein
Chr1_-_12957090 0.66 AT1G35310.1
MLP168
MLP-like protein 168
Chr1_-_7097147 0.65 AT1G20480.1
AT1G20480
AMP-dependent synthetase and ligase family protein
Chr5_-_4734712 0.65 AT5G14690.2
AT5G14690
transmembrane protein
Chr3_+_7715348 0.65 AT3G21900.1
AT3G21900.2
AT3G21900
Receptor-like protein kinase-related family protein
Chr1_+_4429718 0.65 AT1G12980.1
ESR1
Integrase-type DNA-binding superfamily protein
Chr4_-_1540713 0.64 AT4G03460.1
AT4G03460
Ankyrin repeat family protein
Chr1_-_4530222 0.64 AT1G13250.1
GATL3
galacturonosyltransferase-like 3
Chr3_+_2931101 0.64 AT3G09550.1
AT3G09550.2
AT3G09550
Ankyrin repeat family protein
Chr4_+_4331915 0.64 AT4G07519.1
AT4G07519

Chr1_+_21767342 0.63 AT1G58643.1
AT1G58643
Inositol-pentakisphosphate 2-kinase family protein
Chr1_-_25978706 0.63 AT1G69090.1
AT1G69090
F-box protein (DUF295)
Chr5_+_3093272 0.63 AT5G09910.5
AT5G09910
Ras-related small GTP-binding family protein
Chr5_-_11116875 0.63 AT5G29053.1
AT5G29054.1
AT5G29053
AT5G29054

Gag-Pol polyprotein/retrotransposon
Chr3_+_13424905 0.62 AT3G32896.1
AT3G32896
hypothetical protein
Chr5_-_17289958 0.62 AT5G43070.1
WPP1
WPP domain protein 1
Chr2_+_2570237 0.62 AT2G06480.1
AT2G06480

Chr3_-_19666497 0.62 AT3G53040.1
AT3G53040
late embryogenesis abundant protein, putative / LEA protein
Chr1_-_25312482 0.61 AT1G67540.2
AT1G67540.1
AT1G67540
transmembrane protein
Chr1_+_15139933 0.61 AT1G40105.1
AT1G40105

Chr3_-_13987724 0.61 AT3G33169.1
AT3G33169

Chr5_-_12672312 0.61 AT5G33402.1
AT5G33402

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G08750

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 3.7 GO:0009759 indole glucosinolate biosynthetic process(GO:0009759)
0.6 1.8 GO:0045876 positive regulation of sister chromatid cohesion(GO:0045876)
0.5 3.2 GO:0070212 protein ADP-ribosylation(GO:0006471) regulation of starch biosynthetic process(GO:0010581) protein poly-ADP-ribosylation(GO:0070212)
0.5 2.1 GO:0006097 glyoxylate cycle(GO:0006097)
0.4 1.2 GO:0010501 RNA secondary structure unwinding(GO:0010501)
0.4 1.5 GO:0099636 cytoplasmic streaming(GO:0099636)
0.3 2.5 GO:0031222 arabinan catabolic process(GO:0031222)
0.2 2.2 GO:0046247 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.2 0.7 GO:0015709 thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422)
0.2 0.8 GO:0010185 regulation of cellular defense response(GO:0010185)
0.2 1.3 GO:0080117 secondary growth(GO:0080117)
0.2 0.5 GO:0044259 collagen metabolic process(GO:0032963) multicellular organism metabolic process(GO:0044236) multicellular organismal macromolecule metabolic process(GO:0044259)
0.2 1.2 GO:0046621 negative regulation of organ growth(GO:0046621)
0.2 0.9 GO:0009807 lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807)
0.2 1.4 GO:0010601 positive regulation of auxin biosynthetic process(GO:0010601)
0.1 2.3 GO:0009697 salicylic acid biosynthetic process(GO:0009697)
0.1 1.1 GO:0031936 nucleosome positioning(GO:0016584) negative regulation of chromatin silencing(GO:0031936)
0.1 0.6 GO:0060862 regulation of floral organ abscission(GO:0060860) negative regulation of floral organ abscission(GO:0060862)
0.1 7.3 GO:0009816 defense response to bacterium, incompatible interaction(GO:0009816)
0.1 3.0 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.1 5.4 GO:2000022 regulation of jasmonic acid mediated signaling pathway(GO:2000022)
0.1 0.5 GO:0019343 cysteine biosynthetic process via cystathionine(GO:0019343)
0.1 2.2 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.1 0.5 GO:0051329 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
0.1 0.7 GO:0090059 protoxylem development(GO:0090059)
0.1 0.5 GO:0033385 geranylgeranyl diphosphate metabolic process(GO:0033385) geranylgeranyl diphosphate biosynthetic process(GO:0033386)
0.1 0.5 GO:0019742 pentacyclic triterpenoid metabolic process(GO:0019742) pentacyclic triterpenoid biosynthetic process(GO:0019745)
0.1 0.5 GO:0042149 cellular response to glucose starvation(GO:0042149)
0.1 1.1 GO:0010440 stomatal lineage progression(GO:0010440)
0.1 0.2 GO:0002698 negative regulation of immune effector process(GO:0002698) positive regulation of embryonic development(GO:0040019) negative regulation of defense response to virus(GO:0050687)
0.1 0.5 GO:0042447 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.1 3.0 GO:0016126 sterol biosynthetic process(GO:0016126)
0.1 0.4 GO:0043570 maintenance of DNA repeat elements(GO:0043570)
0.1 0.8 GO:0010077 maintenance of inflorescence meristem identity(GO:0010077)
0.1 0.7 GO:0007231 osmosensory signaling pathway(GO:0007231)
0.1 1.0 GO:0010588 cotyledon vascular tissue pattern formation(GO:0010588)
0.1 1.9 GO:0042335 cuticle development(GO:0042335)
0.1 0.6 GO:0048859 formation of organ boundary(GO:0010160) formation of anatomical boundary(GO:0048859)
0.1 1.1 GO:0006817 phosphate ion transport(GO:0006817)
0.0 4.0 GO:0010087 phloem or xylem histogenesis(GO:0010087)
0.0 0.2 GO:0080168 abscisic acid transport(GO:0080168)
0.0 0.8 GO:0045926 negative regulation of growth(GO:0045926)
0.0 0.7 GO:0006857 oligopeptide transport(GO:0006857) peptide transport(GO:0015833)
0.0 1.6 GO:0048235 pollen sperm cell differentiation(GO:0048235)
0.0 0.4 GO:0071249 cellular response to nitrate(GO:0071249)
0.0 0.7 GO:0002238 response to molecule of fungal origin(GO:0002238)
0.0 2.2 GO:0009817 defense response to fungus, incompatible interaction(GO:0009817)
0.0 0.7 GO:2000033 regulation of seed dormancy process(GO:2000033)
0.0 0.3 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.0 0.2 GO:2000757 negative regulation of histone acetylation(GO:0035067) negative regulation of protein acetylation(GO:1901984) negative regulation of peptidyl-lysine acetylation(GO:2000757)
0.0 0.2 GO:0046087 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.0 0.6 GO:0009880 embryonic pattern specification(GO:0009880)
0.0 0.6 GO:0010227 floral organ abscission(GO:0010227)
0.0 0.5 GO:0051553 flavone biosynthetic process(GO:0051553) flavonol biosynthetic process(GO:0051555)
0.0 0.6 GO:0030968 endoplasmic reticulum unfolded protein response(GO:0030968)
0.0 1.3 GO:0006635 fatty acid beta-oxidation(GO:0006635)
0.0 5.7 GO:0071456 cellular response to hypoxia(GO:0071456)
0.0 0.3 GO:0032366 intracellular sterol transport(GO:0032366)
0.0 0.3 GO:0010413 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.0 0.4 GO:2000652 regulation of secondary cell wall biogenesis(GO:2000652)
0.0 0.1 GO:1901656 glucoside transport(GO:0042946) glycoside transport(GO:1901656)
0.0 1.9 GO:0010200 response to chitin(GO:0010200)
0.0 0.4 GO:0019852 L-ascorbic acid metabolic process(GO:0019852) L-ascorbic acid biosynthetic process(GO:0019853)
0.0 1.9 GO:0080167 response to karrikin(GO:0080167)
0.0 0.4 GO:0009269 response to desiccation(GO:0009269)
0.0 2.4 GO:0048511 circadian rhythm(GO:0007623) rhythmic process(GO:0048511)
0.0 2.5 GO:0006470 protein dephosphorylation(GO:0006470)
0.0 0.6 GO:0045489 pectin biosynthetic process(GO:0045489)
0.0 1.9 GO:0042545 cell wall modification(GO:0042545)
0.0 0.5 GO:0051453 regulation of cellular pH(GO:0030641) regulation of intracellular pH(GO:0051453)
0.0 0.5 GO:0051510 regulation of unidimensional cell growth(GO:0051510)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.1 GO:0009514 glyoxysome(GO:0009514)
0.2 0.6 GO:0005640 nuclear outer membrane(GO:0005640)
0.1 1.7 GO:0005801 cis-Golgi network(GO:0005801)
0.1 1.1 GO:0000786 nucleosome(GO:0000786)
0.1 0.5 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.1 0.2 GO:0031932 TORC2 complex(GO:0031932)
0.0 0.2 GO:0070505 pollen coat(GO:0070505)
0.0 0.7 GO:0072686 mitotic spindle(GO:0072686)
0.0 7.7 GO:0009505 plant-type cell wall(GO:0009505)
0.0 0.5 GO:0031012 extracellular matrix(GO:0031012)
0.0 1.0 GO:0005764 lysosome(GO:0005764)
0.0 0.5 GO:0031307 intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307)
0.0 0.3 GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)(GO:0005749) succinate dehydrogenase complex (ubiquinone)(GO:0045257) fumarate reductase complex(GO:0045283)
0.0 2.2 GO:0005887 integral component of plasma membrane(GO:0005887)
0.0 2.5 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.0 1.9 GO:0031225 anchored component of membrane(GO:0031225)
0.0 1.1 GO:0005615 extracellular space(GO:0005615)
0.0 0.7 GO:0005684 U2-type spliceosomal complex(GO:0005684)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 3.2 GO:0080042 ADP-glucose pyrophosphohydrolase activity(GO:0080042)
0.5 1.5 GO:0047209 coniferyl-alcohol glucosyltransferase activity(GO:0047209)
0.4 3.0 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.3 1.3 GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives(GO:0016856)
0.3 1.9 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.3 0.8 GO:0050412 cinnamate beta-D-glucosyltransferase activity(GO:0050412)
0.2 2.2 GO:0010436 carotenoid dioxygenase activity(GO:0010436)
0.2 0.7 GO:0015117 thiosulfate transmembrane transporter activity(GO:0015117)
0.2 1.1 GO:0031492 nucleosomal DNA binding(GO:0031492)
0.2 2.5 GO:0046556 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.2 1.3 GO:0052622 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.2 2.1 GO:0016833 oxo-acid-lyase activity(GO:0016833)
0.2 2.2 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.2 0.8 GO:0005544 calcium-dependent phospholipid binding(GO:0005544)
0.1 3.0 GO:0015174 basic amino acid transmembrane transporter activity(GO:0015174)
0.1 0.5 GO:0004181 metallocarboxypeptidase activity(GO:0004181)
0.1 0.1 GO:0042947 glucoside transmembrane transporter activity(GO:0042947)
0.1 0.5 GO:0004679 AMP-activated protein kinase activity(GO:0004679)
0.1 0.4 GO:0016985 mannan endo-1,4-beta-mannosidase activity(GO:0016985)
0.1 0.5 GO:0004123 cystathionine gamma-lyase activity(GO:0004123)
0.1 0.7 GO:0010340 carboxyl-O-methyltransferase activity(GO:0010340)
0.1 0.5 GO:0045431 flavonol synthase activity(GO:0045431)
0.1 1.1 GO:0015114 phosphate ion transmembrane transporter activity(GO:0015114)
0.1 0.5 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.1 0.5 GO:0042299 lupeol synthase activity(GO:0042299)
0.1 0.4 GO:0050105 L-gulonolactone oxidase activity(GO:0050105)
0.1 0.5 GO:0004337 geranyltranstransferase activity(GO:0004337)
0.0 0.7 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 0.4 GO:0051185 S-adenosyl-L-methionine transmembrane transporter activity(GO:0000095) coenzyme transporter activity(GO:0051185)
0.0 5.1 GO:0004722 protein serine/threonine phosphatase activity(GO:0004722)
0.0 0.7 GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity(GO:0047196)
0.0 0.6 GO:0004714 transmembrane receptor protein tyrosine kinase activity(GO:0004714)
0.0 0.3 GO:0008177 succinate dehydrogenase (ubiquinone) activity(GO:0008177)
0.0 8.0 GO:0005507 copper ion binding(GO:0005507)
0.0 0.4 GO:0008453 alanine-glyoxylate transaminase activity(GO:0008453)
0.0 2.6 GO:0042910 xenobiotic transporter activity(GO:0042910)
0.0 1.2 GO:0031624 ubiquitin conjugating enzyme binding(GO:0031624)
0.0 0.7 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.0 0.2 GO:0050664 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.0 0.9 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 0.8 GO:0031490 chromatin DNA binding(GO:0031490)
0.0 2.2 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.0 0.8 GO:0008810 cellulase activity(GO:0008810)
0.0 0.4 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.0 0.2 GO:0004126 cytidine deaminase activity(GO:0004126)
0.0 0.8 GO:0005179 hormone activity(GO:0005179)
0.0 1.0 GO:0080030 methyl indole-3-acetate esterase activity(GO:0080030)
0.0 3.8 GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709)
0.0 1.9 GO:0030599 pectinesterase activity(GO:0030599)
0.0 0.4 GO:0016844 strictosidine synthase activity(GO:0016844)
0.0 1.6 GO:0003697 single-stranded DNA binding(GO:0003697)
0.0 1.3 GO:0015171 amino acid transmembrane transporter activity(GO:0015171)
0.0 0.1 GO:0098599 palmitoyl hydrolase activity(GO:0098599)
0.0 0.1 GO:0019158 glucose binding(GO:0005536) mannokinase activity(GO:0019158)
0.0 0.2 GO:0004675 transmembrane receptor protein serine/threonine kinase activity(GO:0004675)
0.0 1.8 GO:0009055 electron carrier activity(GO:0009055)
0.0 0.5 GO:0004222 metalloendopeptidase activity(GO:0004222)
0.0 0.5 GO:0008553 hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)
0.0 0.2 GO:0030955 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.0 1.1 GO:0004857 enzyme inhibitor activity(GO:0004857)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 PID HDAC CLASSII PATHWAY Signaling events mediated by HDAC Class II
0.1 1.0 PID HES HEY PATHWAY Notch-mediated HES/HEY network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.9 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines
0.1 0.6 REACTOME GENERIC TRANSCRIPTION PATHWAY Genes involved in Generic Transcription Pathway
0.1 1.0 REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION Genes involved in Factors involved in megakaryocyte development and platelet production