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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G08520

Z-value: 1.24

Transcription factors associated with AT5G08520

Gene Symbol Gene ID Gene Info
AT5G08520
AT5G08520 Duplicated homeodomain-like superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT5G08520arTal_v1_Chr5_-_2758540_27585400.478.7e-02Click!

Activity profile of AT5G08520 motif

Sorted Z-values of AT5G08520 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_+_18347765 1.72 AT2G44460.2
BGLU28
beta glucosidase 28
Chr2_+_18346306 1.68 AT2G44460.1
BGLU28
beta glucosidase 28
Chr2_-_6493512 1.37 AT2G15020.1
AT2G15020
hypothetical protein
Chr4_+_16944878 1.20 AT4G35770.1
AT4G35770.2
AT4G35770.5
AT4G35770.6
AT4G35770.4
AT4G35770.3
SEN1
Rhodanese/Cell cycle control phosphatase superfamily protein
Chr4_-_2992618 1.20 AT4G05631.1
AT4G05631
hypothetical protein
Chr2_+_9254378 1.19 AT2G21640.1
AT2G21640
marker for oxidative stress response protein
Chr5_-_20204595 1.16 AT5G49730.1
AT5G49730.2
FRO6
ferric reduction oxidase 6
Chr4_-_10591546 1.14 AT4G19420.3
AT4G19420.2
AT4G19420.1
AT4G19420
Pectinacetylesterase family protein
Chr1_-_20310850 1.14 AT1G54410.1
AT1G54410
dehydrin family protein
Chr2_+_239669 1.14 AT2G01530.1
MLP329
MLP-like protein 329
Chr3_+_9827682 1.12 AT3G26740.1
CCL
CCR-like protein
Chr4_+_8010967 1.11 AT4G13830.2
AT4G13830.3
J20
DNAJ-like 20
Chr2_-_16603059 1.10 AT2G39800.2
AT2G39800.4
AT2G39800.3
P5CS1
delta1-pyrroline-5-carboxylate synthase 1
Chr4_-_7893727 1.09 AT4G13575.1
AT4G13575.2
AT4G13575
hypothetical protein
Chr4_+_8011183 1.04 AT4G13830.1
J20
DNAJ-like 20
Chr1_-_19052582 1.04 AT1G51400.1
AT1G51400
Photosystem II 5 kD protein
Chr1_+_24824356 1.00 AT1G66540.1
AT1G66540.2
AT1G66540
Cytochrome P450 superfamily protein
Chr2_-_15425129 0.99 AT2G36800.1
DOGT1
don-glucosyltransferase 1
Chr3_+_16525245 0.97 AT3G45140.1
AT3G45140.2
LOX2
lipoxygenase 2
Chr1_-_4682309 0.97 AT1G13650.3
AT1G13650.4
AT1G13650.2
AT1G13650.1
AT1G13650
hypothetical protein
Chr3_-_6143310 0.96 AT3G17930.1
DAC
transmembrane protein
Chr1_-_30404713 0.95 AT1G80920.1
J8
Chaperone DnaJ-domain superfamily protein
Chr5_+_5497524 0.94 AT5G16730.1
AT5G16730
weak chloroplast movement under blue light protein (DUF827)
Chr3_+_17051520 0.94 AT3G46370.1
AT3G46370.2
AT3G46370
Leucine-rich repeat protein kinase family protein
Chr2_-_16603319 0.93 AT2G39800.1
P5CS1
delta1-pyrroline-5-carboxylate synthase 1
Chr1_-_26796529 0.92 AT1G71030.1
AT1G71030.2
MYBL2
MYB-like 2
Chr4_-_13729002 0.92 AT4G27450.1
AT4G27450
aluminum induced protein with YGL and LRDR motifs
Chr4_-_10590700 0.92 AT4G19420.4
AT4G19420
Pectinacetylesterase family protein
Chr5_+_19183523 0.91 AT5G47240.2
AT5G47240.1
NUDT8
nudix hydrolase homolog 8
Chr2_+_1679307 0.90 AT2G04790.10
AT2G04790.6
AT2G04790.5
AT2G04790.7
AT2G04790.9
AT2G04790.8
AT2G04790.13
AT2G04790.12
AT2G04790.11
AT2G04790.14
AT2G04790.15
AT2G04790.16
AT2G04790.4
AT2G04790.3
AT2G04790.1
AT2G04790.2
AT2G04790
PTB domain engulfment adapter
Chr3_-_9580086 0.90 AT3G26180.2
AT3G26180.1
CYP71B20
cytochrome P450, family 71, subfamily B, polypeptide 20
Chr5_+_13689817 0.88 AT5G35490.1
MRU1
mto 1 responding up 1
Chr5_+_23167774 0.86 AT5G57180.1
AT5G57180.2
AT5G57180.4
AT5G57180.3
CIA2
chloroplast import apparatus 2
Chr1_+_2984829 0.86 AT1G09240.1
NAS3
nicotianamine synthase 3
Chr4_-_13958107 0.86 AT4G28080.1
AT4G28080
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_+_18413775 0.85 AT4G39675.1
AT4G39675
hypothetical protein
Chr4_+_8360996 0.84 AT4G14560.1
IAA1
indole-3-acetic acid inducible
Chr4_+_418327 0.83 AT4G00970.1
AT4G00970.2
CRK41
cysteine-rich RLK (RECEPTOR-like protein kinase) 41
Chr1_-_13698739 0.83 AT1G36370.1
SHM7
serine hydroxymethyltransferase 7
Chr5_-_5018347 0.82 AT5G15450.1
CLPB3
casein lytic proteinase B3
Chr5_-_18026077 0.82 AT5G44680.1
AT5G44680
DNA glycosylase superfamily protein
Chr5_+_6424779 0.81 AT5G19140.3
AILP1
aluminum induced protein with YGL and LRDR motifs
Chr3_+_15983199 0.81 AT3G44300.1
NIT2
nitrilase 2
Chr3_+_9352444 0.80 AT3G25690.4
AT3G25690.5
AT3G25690.6
CHUP1
Hydroxyproline-rich glycoprotein family protein
Chr1_-_6802652 0.79 AT1G19660.2
AT1G19660.3
AT1G19660.1
AT1G19660
Wound-responsive family protein
Chr5_-_22429495 0.78 AT5G55300.3
AT5G55300.2
AT5G55300.1
TOP1ALPHA
DNA topoisomerase I alpha
Chr3_-_2329926 0.78 AT3G07310.2
AT3G07310.1
AT3G07310
phosphoserine aminotransferase, putative (DUF760)
Chr4_+_8875656 0.78 AT4G15545.1
AT4G15545
PH-response transcription factor
Chr1_-_26474786 0.78 AT1G70290.2
AT1G70290.1
TPS8
trehalose-6-phosphatase synthase S8
Chr4_-_7686873 0.78 AT4G13250.2
AT4G13250.1
NYC1
NAD(P)-binding Rossmann-fold superfamily protein
Chr5_-_22896734 0.77 AT5G56550.1
OXS3
oxidative stress 3
Chr1_-_2163387 0.77 AT1G07040.1
AT1G07040
plant/protein
Chr2_-_19211021 0.76 AT2G46750.1
GulLO2
D-arabinono-1,4-lactone oxidase family protein
Chr3_+_9353010 0.76 AT3G25690.2
AT3G25690.3
CHUP1
Hydroxyproline-rich glycoprotein family protein
Chr1_+_557092 0.76 AT1G02620.1
AT1G02620
Ras-related small GTP-binding family protein
Chr5_+_8365601 0.76 AT5G24490.1
AT5G24490
30S ribosomal protein
Chr3_-_20272504 0.76 AT3G54760.2
AT3G54760.1
AT3G54760
dentin sialophosphoprotein-like protein
Chr5_+_6423153 0.76 AT5G19140.2
AT5G19140.1
AILP1
aluminum induced protein with YGL and LRDR motifs
Chr3_-_1832190 0.75 AT3G06070.1
AT3G06070
hypothetical protein
Chr1_+_26705420 0.75 AT1G70820.1
AT1G70820.2
AT1G70820
phosphoglucomutase, putative / glucose phosphomutase
Chr1_+_1018058 0.74 AT1G03970.1
GBF4
G-box binding factor 4
Chr1_-_19385533 0.74 AT1G52100.1
AT1G52100.3
AT1G52100.4
AT1G52100.2
AT1G52100.5
AT1G52100
Mannose-binding lectin superfamily protein
Chr1_-_20343554 0.74 AT1G54460.1
AT1G54460
TPX2 (targeting protein for Xklp2) protein family
Chr1_-_130570 0.74 AT1G01320.1
AT1G01320.3
AT1G01320.2
AT1G01320
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_-_29518028 0.74 AT1G78450.1
AT1G78450
SOUL heme-binding family protein
Chr1_-_9864779 0.74 AT1G28230.1
PUP1
purine permease 1
Chr5_+_8217191 0.73 AT5G24210.1
AT5G24210.2
AT5G24210.3
AT5G24210
alpha/beta-Hydrolases superfamily protein
Chr3_+_11252807 0.73 AT3G29320.1
PHS1
Glycosyl transferase, family 35
Chr3_-_9597927 0.73 AT3G26220.1
CYP71B3
cytochrome P450, family 71, subfamily B, polypeptide 3
Chr5_-_23308680 0.73 AT5G57560.1
TCH4
Xyloglucan endotransglucosylase/hydrolase family protein
Chr4_+_17243583 0.72 AT4G36540.2
AT4G36540.1
BEE2
BR enhanced expression 2
Chr1_+_24149208 0.72 AT1G65010.1
AT1G65010
WEB family protein (DUF827)
Chr5_+_18670051 0.72 AT5G46030.1
AT5G46030.2
AT5G46030.3
AT5G46030
transcription elongation factor-like protein
Chr1_+_6763765 0.72 AT1G19530.1
AT1G19530.2
AT1G19530
DNA polymerase epsilon catalytic subunit A
Chr3_-_17658353 0.72 AT3G47860.1
CHL
chloroplastic lipocalin
Chr2_+_12597018 0.72 AT2G29340.2
AT2G29340.1
AT2G29340.3
AT2G29340.4
AT2G29340
NAD-dependent epimerase/dehydratase family protein
Chr3_-_18348730 0.71 AT3G49490.1
AT3G49490
hypothetical protein
Chr1_+_19806263 0.71 AT1G53160.1
AT1G53160.2
AT1G53160.3
SPL4
squamosa promoter binding protein-like 4
Chr4_+_14317226 0.71 AT4G29060.1
AT4G29060.2
emb2726
elongation factor Ts family protein
Chr5_+_6006035 0.71 AT5G18170.1
GDH1
glutamate dehydrogenase 1
Chr3_-_3025945 0.71 AT3G09850.1
AT3G09850
D111/G-patch domain-containing protein
Chr4_+_13307461 0.71 AT4G26288.1
AT4G26288
hypothetical protein
Chr4_+_15608905 0.70 AT4G32330.3
AT4G32330.1
AT4G32330.2
AT4G32330.4
AT4G32330
TPX2 (targeting protein for Xklp2) protein family
Chr1_+_17863660 0.70 AT1G48330.1
AT1G48330
SsrA-binding protein
Chr2_-_761013 0.70 AT2G02710.2
AT2G02710.3
AT2G02710.4
AT2G02710.1
PLPB
PAS/LOV protein B
Chr4_+_11424666 0.70 AT4G21445.1
AT4G21445
receptor-interacting protein
Chr5_+_22175461 0.69 AT5G54585.1
AT5G54585
hypothetical protein
Chr4_-_9497313 0.69 AT4G16880.1
AT4G16880
Leucine-rich repeat (LRR) family protein
Chr2_-_19114173 0.69 AT2G46550.3
AT2G46550.1
AT2G46550.2
AT2G46550
transmembrane protein
Chr4_+_10633619 0.69 AT4G19510.3
AT4G19510.4
AT4G19510.5
AT4G19510.6
AT4G19510.8
AT4G19510.7
AT4G19510.9
AT4G19510.1
AT4G19510.10
AT4G19510.2
AT4G19510
Disease resistance protein (TIR-NBS-LRR class)
Chr1_-_28024860 0.69 AT1G74590.1
GSTU10
glutathione S-transferase TAU 10
Chr4_-_13172904 0.69 AT4G25940.1
AT4G25940
ENTH/ANTH/VHS superfamily protein
Chr2_-_1017222 0.69 AT2G03340.1
WRKY3
WRKY DNA-binding protein 3
Chr5_-_24083528 0.69 AT5G59780.2
AT5G59780.1
AT5G59780.3
MYB59
myb domain protein 59
Chr4_-_11636720 0.68 AT4G21920.1
AT4G21920
hypothetical protein
Chr3_+_7067057 0.68 AT3G20270.4
AT3G20270.3
AT3G20270.5
AT3G20270.6
AT3G20270.1
AT3G20270.2
AT3G20270
lipid-binding serum glycoprotein family protein
Chr1_+_4153641 0.68 AT1G12240.1
ATBETAFRUCT4
Glycosyl hydrolases family 32 protein
Chr4_-_6699199 0.68 AT4G10920.2
AT4G10920.1
KELP
transcriptional coactivator p15 (PC4) family protein (KELP)
Chr2_-_16287967 0.68 AT2G39000.3
AT2G39000.2
AT2G39000.4
AT2G39000
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Chr1_+_27148261 0.68 AT1G72150.1
PATL1
PATELLIN 1
Chr4_+_8517100 0.68 AT4G14870.1
SECE1
secE/sec61-gamma protein transport protein
Chr4_+_15202288 0.68 AT4G31330.1
AT4G31330
transmembrane protein, putative (Protein of unknown function, DUF599)
Chr1_+_6450585 0.67 AT1G18710.1
MYB47
myb domain protein 47
Chr1_+_6942625 0.67 AT1G20020.1
AT1G20020.2
AT1G20020.3
FNR2
ferredoxin-NADP[+]-oxidoreductase 2
Chr4_+_11306945 0.67 AT4G21210.2
AT4G21210.1
RP1
PPDK regulatory protein
Chr1_-_6757420 0.67 AT1G19510.1
RL5
RAD-like 5
Chr5_+_16711042 0.67 AT5G41761.1
AT5G41761
hypothetical protein
Chr5_+_6457026 0.66 AT5G19190.1
AT5G19190
hypothetical protein
Chr1_+_7146636 0.66 AT1G20630.1
CAT1
catalase 1
Chr1_-_18930811 0.66 AT1G51080.1
AT1G51080
golgin family A protein
Chr3_+_59423 0.66 AT3G01175.1
AT3G01175
transmembrane protein
Chr1_-_9140439 0.66 AT1G26410.1
AT1G26410
FAD-binding Berberine family protein
Chr1_-_6860376 0.66 AT1G19835.1
AT1G19835.4
AT1G19835.6
AT1G19835.3
AT1G19835
filament-like protein (DUF869)
Chr2_-_19166949 0.65 AT2G46680.2
AT2G46680.1
HB-7
homeobox 7
Chr3_-_5271984 0.65 AT3G15570.1
AT3G15570
Phototropic-responsive NPH3 family protein
Chr5_+_15555156 0.65 AT5G38850.1
AT5G38850
Disease resistance protein (TIR-NBS-LRR class)
Chr5_-_18591474 0.65 AT5G45830.3
AT5G45830.2
AT5G45830.6
AT5G45830.4
AT5G45830.1
AT5G45830.5
DOG1
delay of germination 1
Chr3_+_9353271 0.65 AT3G25690.1
CHUP1
Hydroxyproline-rich glycoprotein family protein
Chr1_+_2852363 0.65 AT1G08900.2
AT1G08900.4
AT1G08900.1
AT1G08900.5
AT1G08900.3
AT1G08900
Major facilitator superfamily protein
Chr1_+_16923440 0.65 AT1G44810.1
AT1G44810
DNA-binding storekeeper protein-related transcriptional regulator
Chr2_-_9077048 0.65 AT2G21185.1
AT2G21185
transmembrane protein
Chr5_+_4122400 0.64 AT5G13010.1
EMB3011
RNA helicase family protein
Chr1_+_8168443 0.64 AT1G23050.1
AT1G23050
hydroxyproline-rich glycoprotein family protein
Chr4_-_18190556 0.64 AT4G39040.2
AT4G39040.1
AT4G39040
RNA-binding CRS1 / YhbY (CRM) domain protein
Chr1_-_18176389 0.64 AT1G49130.2
AT1G49130.1
BBX17
B-box type zinc finger protein with CCT domain-containing protein
Chr1_-_20930017 0.64 AT1G55960.2
AT1G55960
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Chr2_+_16476198 0.64 AT2G39470.1
AT2G39470.2
AT2G39470.3
PnsL1
PsbP-like protein 2
Chr1_+_11568654 0.64 AT1G32160.1
AT1G32160
beta-casein (DUF760)
Chr2_+_14097369 0.64 AT2G33250.1
AT2G33250
transmembrane protein
Chr1_+_10723454 0.63 AT1G30390.1
AT1G30390

Chr1_-_26434538 0.63 AT1G70200.1
AT1G70200
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr1_-_20930209 0.63 AT1G55960.1
AT1G55960
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Chr1_-_467873 0.62 AT1G02340.2
AT1G02340.1
HFR1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr1_-_22096620 0.62 AT1G60010.1
AT1G60010
D-ribose-binding periplasmic protein
Chr1_-_29716255 0.62 AT1G78995.1
AT1G78995
hypothetical protein
Chr2_+_10995095 0.62 AT2G25780.1
AT2G25780
hypothetical protein (DUF1677)
Chr2_-_9963628 0.61 AT2G23390.2
AT2G23390.1
AT2G23390
acyl-CoA
Chr5_-_22045242 0.61 AT5G54280.1
ATM2
myosin 2
Chr3_+_3249513 0.61 AT3G10450.3
AT3G10450.2
AT3G10450.1
AT3G10450.4
SCPL7
serine carboxypeptidase-like 7
Chr1_+_18546086 0.61 AT1G50050.2
AT1G50050.1
AT1G50050
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Chr1_+_11532199 0.61 AT1G32060.1
PRK
phosphoribulokinase
Chr5_-_13959830 0.61 AT5G35790.1
G6PD1
glucose-6-phosphate dehydrogenase 1
Chr4_+_9670763 0.61 AT4G17250.1
AT4G17250.2
AT4G17250.3
AT4G17250
transmembrane protein
Chr1_+_7949476 0.61 AT1G22500.1
ATL15
RING/U-box superfamily protein
Chr3_+_23135630 0.61 AT3G62550.1
AT3G62550
Adenine nucleotide alpha hydrolases-like superfamily protein
Chr5_+_7529292 0.60 AT5G22640.3
AT5G22640.1
AT5G22640.2
emb1211
MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein
Chr1_-_26726652 0.60 AT1G70890.1
MLP43
MLP-like protein 43
Chr2_-_10737800 0.60 AT2G25200.1
AT2G25200
hypothetical protein (DUF868)
Chr5_+_3776723 0.60 AT5G11720.1
AT5G11720
Glycosyl hydrolases family 31 protein
Chr1_+_8006064 0.60 AT1G22640.1
AT1G22640.2
MYB3
myb domain protein 3
Chr1_-_6822711 0.60 AT1G19720.1
AT1G19720
Pentatricopeptide repeat (PPR-like) superfamily protein
Chr1_-_5265103 0.60 AT1G15290.2
AT1G15290.1
AT1G15290
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_26403341 0.60 AT1G70100.2
AT1G70100.5
AT1G70100.6
AT1G70100
neurofilament heavy protein
Chr2_-_1149261 0.59 AT2G03750.1
AT2G03750
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_-_8570505 0.59 AT1G24190.1
AT1G24190.3
AT1G24190.2
SNL3
SIN3-like 3
Chr4_+_8218261 0.59 AT4G14270.2
AT4G14270
polyadenylate-binding protein interacting protein
Chr5_+_15703078 0.58 AT5G39210.1
CRR7
chlororespiratory reduction 7
Chr5_+_8668232 0.58 AT5G25130.1
CYP71B12
cytochrome P450, family 71, subfamily B, polypeptide 12
Chr3_+_6313471 0.58 AT3G18390.1
EMB1865
CRS1 / YhbY (CRM) domain-containing protein
Chr5_-_16855741 0.58 AT5G42190.1
AT5G42190
E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein
Chr4_+_5723651 0.58 AT4G08920.1
CRY1
cryptochrome 1
Chr2_-_19315241 0.58 AT2G47000.7
AT2G47000.1
AT2G47000.2
AT2G47000.4
AT2G47000.3
ABCB4
ATP binding cassette subfamily B4
Chr1_+_7588589 0.58 AT1G21640.1
NADK2
NAD kinase 2
Chr1_+_7588414 0.58 AT1G21640.2
NADK2
NAD kinase 2
Chr1_+_25999837 0.58 AT1G69160.1
AT1G69160
suppressor
Chr4_+_8218083 0.58 AT4G14270.1
AT4G14270
polyadenylate-binding protein interacting protein
Chr2_-_6922025 0.58 AT2G15890.2
AT2G15890.1
MEE14
maternal effect embryo arrest 14
Chr5_+_23940745 0.58 AT5G59350.1
AT5G59350.2
AT5G59350.3
AT5G59350
transmembrane protein
Chr1_+_8006423 0.57 AT1G22640.3
MYB3
myb domain protein 3
Chr5_+_14007812 0.57 AT5G35840.1
PHYC
phytochrome C
Chr2_+_8108898 0.57 AT2G18700.1
TPS11
trehalose phosphatase/synthase 11
Chr1_-_7565655 0.57 AT1G21580.9
AT1G21580.6
AT1G21580.7
AT1G21580.5
AT1G21580.8
AT1G21580.1
AT1G21580.3
AT1G21580.4
AT1G21580.2
AT1G21580
Zinc finger C-x8-C-x5-C-x3-H type family protein
Chr3_-_2826922 0.57 AT3G09210.1
PTAC13
plastid transcriptionally active 13
Chr2_+_14827360 0.57 AT2G35170.1
AT2G35170
Histone H3 K4-specific methyltransferase SET7/9 family protein
Chr1_+_6460598 0.57 AT1G18730.3
AT1G18730.2
AT1G18730.4
PnsB4
NDH dependent flow 6
Chr1_-_17285749 0.57 AT1G47128.1
RD21A
Granulin repeat cysteine protease family protein
Chr4_+_2324878 0.57 AT4G04610.1
APR1
APS reductase 1
Chr3_-_1462917 0.56 AT3G05165.4
AT3G05165.1
AT3G05165.6
AT3G05165.3
AT3G05165.5
AT3G05165.2
AT3G05165
Major facilitator superfamily protein
Chr3_-_17506124 0.56 AT3G47500.1
CDF3
cycling DOF factor 3
Chr2_-_14310608 0.56 AT2G33830.2
AT2G33830
Dormancy/auxin associated family protein
Chr5_-_8559488 0.56 AT5G24890.1
AT5G24890
stress response NST1-like protein
Chr3_+_1035238 0.56 AT3G04000.1
AT3G04000
NAD(P)-binding Rossmann-fold superfamily protein
Chr4_+_334573 0.56 AT4G00780.1
AT4G00780
TRAF-like family protein
Chr3_+_10442608 0.56 AT3G28050.1
UMAMIT41
nodulin MtN21 /EamA-like transporter family protein
Chr4_-_10472726 0.56 AT4G19150.2
AT4G19150.1
AT4G19150
Ankyrin repeat family protein
Chr5_-_17893067 0.55 AT5G44410.1
AT5G44410
FAD-binding Berberine family protein
Chr4_-_17672353 0.55 AT4G37610.1
BT5
BTB and TAZ domain protein 5
Chr2_-_14310339 0.55 AT2G33830.1
AT2G33830
Dormancy/auxin associated family protein
Chr1_-_7706198 0.55 AT1G21920.2
AT1G21920.1
AT1G21920
Histone H3 K4-specific methyltransferase SET7/9 family protein
Chr1_+_24229063 0.54 AT1G65230.1
AT1G65230
transmembrane protein, putative (DUF2358)
Chr4_+_8713689 0.54 AT4G15260.1
AT4G15260
UDP-Glycosyltransferase superfamily protein
Chr5_+_9648508 0.54 AT5G27350.1
SFP1
Major facilitator superfamily protein
Chr5_-_17739949 0.54 AT5G44080.1
AT5G44080
Basic-leucine zipper (bZIP) transcription factor family protein
Chr5_-_25417117 0.54 AT5G63470.2
AT5G63470.1
NF-YC4
nuclear factor Y, subunit C4
Chr2_-_16288262 0.54 AT2G39000.1
AT2G39000
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Chr2_+_10667898 0.54 AT2G25080.1
GPX1
glutathione peroxidase 1
Chr1_-_9199671 0.54 AT1G26620.1
AT1G26620
T-box transcription factor, putative (DUF863)
Chr5_-_22046358 0.54 AT5G54280.2
ATM2
myosin 2
Chr3_+_8003898 0.54 AT3G22590.1
PHP
PLANT HOMOLOGOUS TO PARAFIBROMIN
Chr4_+_6288821 0.54 AT4G10060.1
AT4G10060.2
AT4G10060
Beta-glucosidase, GBA2 type family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G08520

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 2.2 GO:0010322 regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0010322)
0.4 1.5 GO:0035865 cellular response to potassium ion(GO:0035865)
0.3 2.0 GO:0055129 L-proline biosynthetic process(GO:0055129)
0.3 1.0 GO:0010597 green leaf volatile biosynthetic process(GO:0010597)
0.3 1.2 GO:0006741 NADP biosynthetic process(GO:0006741)
0.3 0.8 GO:0000050 urea cycle(GO:0000050)
0.3 0.8 GO:0045900 negative regulation of translational elongation(GO:0045900)
0.2 0.7 GO:0010184 cytokinin transport(GO:0010184)
0.2 1.1 GO:0033591 response to L-ascorbic acid(GO:0033591)
0.2 1.1 GO:0060919 auxin influx(GO:0060919)
0.2 0.9 GO:0030418 nicotianamine metabolic process(GO:0030417) nicotianamine biosynthetic process(GO:0030418) tricarboxylic acid biosynthetic process(GO:0072351)
0.2 0.6 GO:0033120 positive regulation of RNA splicing(GO:0033120)
0.2 2.9 GO:0010244 response to low fluence blue light stimulus by blue low-fluence system(GO:0010244)
0.2 0.8 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.2 0.6 GO:0010269 response to selenium ion(GO:0010269)
0.2 0.6 GO:0033530 raffinose metabolic process(GO:0033530)
0.2 1.2 GO:0000379 tRNA-type intron splice site recognition and cleavage(GO:0000379)
0.2 0.6 GO:0010275 NAD(P)H dehydrogenase complex assembly(GO:0010275)
0.2 0.6 GO:0018065 protein-cofactor linkage(GO:0018065)
0.2 0.8 GO:0036123 histone H3-K9 dimethylation(GO:0036123) regulation of histone H3-K9 dimethylation(GO:1900109)
0.2 0.2 GO:0017145 stem cell division(GO:0017145)
0.2 1.6 GO:0010304 PSII associated light-harvesting complex II catabolic process(GO:0010304)
0.2 0.7 GO:0090322 regulation of superoxide metabolic process(GO:0090322)
0.2 0.7 GO:0035494 SNARE complex disassembly(GO:0035494)
0.2 1.6 GO:0051410 detoxification of nitrogen compound(GO:0051410)
0.2 0.8 GO:0045922 negative regulation of fatty acid metabolic process(GO:0045922)
0.2 0.8 GO:0035627 ceramide transport(GO:0035627)
0.2 0.8 GO:0010390 histone monoubiquitination(GO:0010390)
0.1 0.4 GO:2001294 fatty-acyl-CoA catabolic process(GO:0036115) malonyl-CoA catabolic process(GO:2001294)
0.1 0.7 GO:0010321 regulation of vegetative phase change(GO:0010321)
0.1 0.4 GO:0098532 histone H3-K27 trimethylation(GO:0098532) regulation of histone H3-K27 trimethylation(GO:1902464)
0.1 0.7 GO:0005980 glycogen catabolic process(GO:0005980)
0.1 0.4 GO:0046459 short-chain fatty acid metabolic process(GO:0046459)
0.1 0.9 GO:0048439 flower morphogenesis(GO:0048439)
0.1 0.6 GO:0006435 threonyl-tRNA aminoacylation(GO:0006435)
0.1 0.9 GO:1900367 positive regulation of defense response to insect(GO:1900367)
0.1 0.7 GO:0010599 production of lsiRNA involved in RNA interference(GO:0010599)
0.1 0.7 GO:0009647 skotomorphogenesis(GO:0009647)
0.1 0.3 GO:1904215 regulation of protein import into chloroplast stroma(GO:1904215)
0.1 2.6 GO:0009773 photosynthetic electron transport in photosystem I(GO:0009773)
0.1 0.4 GO:2000072 regulation of defense response to fungus, incompatible interaction(GO:2000072)
0.1 0.7 GO:1990481 mRNA pseudouridine synthesis(GO:1990481)
0.1 0.5 GO:0010677 negative regulation of cellular carbohydrate metabolic process(GO:0010677)
0.1 0.5 GO:0016098 monoterpenoid metabolic process(GO:0016098) monoterpenoid biosynthetic process(GO:0016099)
0.1 2.4 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.1 0.4 GO:0010213 non-photoreactive DNA repair(GO:0010213)
0.1 0.5 GO:0045046 protein import into peroxisome membrane(GO:0045046)
0.1 0.5 GO:0055073 cadmium ion homeostasis(GO:0055073)
0.1 0.7 GO:0009800 cinnamic acid biosynthetic process(GO:0009800)
0.1 1.0 GO:0009786 regulation of asymmetric cell division(GO:0009786)
0.1 1.0 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.1 0.5 GO:0090065 regulation of production of siRNA involved in RNA interference(GO:0090065)
0.1 1.1 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.1 0.8 GO:0046835 carbohydrate phosphorylation(GO:0046835)
0.1 0.5 GO:0010219 regulation of vernalization response(GO:0010219)
0.1 0.6 GO:0019419 sulfate reduction(GO:0019419)
0.1 0.7 GO:2000757 negative regulation of histone acetylation(GO:0035067) negative regulation of protein acetylation(GO:1901984) negative regulation of peptidyl-lysine acetylation(GO:2000757)
0.1 0.8 GO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase(GO:0033540)
0.1 0.4 GO:0016320 endoplasmic reticulum membrane fusion(GO:0016320)
0.1 0.4 GO:0048838 release of seed from dormancy(GO:0048838) exit from dormancy(GO:0097438)
0.1 0.5 GO:0008608 attachment of spindle microtubules to kinetochore(GO:0008608)
0.1 0.5 GO:0030322 stabilization of membrane potential(GO:0030322)
0.1 1.3 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.1 0.3 GO:0035493 SNARE complex assembly(GO:0035493)
0.1 0.2 GO:0051341 regulation of oxidoreductase activity(GO:0051341)
0.1 0.4 GO:0034720 histone H3-K4 demethylation(GO:0034720)
0.1 0.3 GO:0090143 nucleoid organization(GO:0090143)
0.1 0.4 GO:0034414 tRNA 3'-trailer cleavage, endonucleolytic(GO:0034414)
0.1 0.3 GO:0010246 rhamnogalacturonan I biosynthetic process(GO:0010246)
0.1 1.4 GO:0048564 photosystem I assembly(GO:0048564)
0.1 0.5 GO:0019310 inositol catabolic process(GO:0019310)
0.1 0.6 GO:0009584 detection of visible light(GO:0009584)
0.1 0.6 GO:0034059 response to anoxia(GO:0034059)
0.1 0.4 GO:0045833 negative regulation of lipid metabolic process(GO:0045833) negative regulation of lipid biosynthetic process(GO:0051055)
0.1 0.4 GO:0006419 alanyl-tRNA aminoacylation(GO:0006419)
0.1 1.7 GO:0000373 Group II intron splicing(GO:0000373)
0.1 0.6 GO:0070979 protein K11-linked ubiquitination(GO:0070979)
0.1 0.7 GO:0009061 anaerobic respiration(GO:0009061)
0.1 1.5 GO:1901259 chloroplast rRNA processing(GO:1901259)
0.1 0.3 GO:0034982 mitochondrial protein processing(GO:0034982) cristae formation(GO:0042407)
0.1 1.1 GO:0060260 regulation of transcription initiation from RNA polymerase II promoter(GO:0060260) positive regulation of transcription initiation from RNA polymerase II promoter(GO:0060261) positive regulation of DNA-templated transcription, initiation(GO:2000144)
0.1 0.3 GO:0090549 response to carbon starvation(GO:0090549)
0.1 0.3 GO:0046898 response to cycloheximide(GO:0046898) cellular response to external biotic stimulus(GO:0071217)
0.1 0.3 GO:0046373 L-arabinose metabolic process(GO:0046373)
0.1 0.7 GO:0031222 arabinan catabolic process(GO:0031222)
0.1 0.5 GO:1901001 negative regulation of response to salt stress(GO:1901001)
0.1 0.5 GO:0080151 positive regulation of salicylic acid mediated signaling pathway(GO:0080151)
0.1 0.2 GO:0045764 positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764)
0.1 0.2 GO:0006557 S-adenosylmethioninamine biosynthetic process(GO:0006557) S-adenosylmethioninamine metabolic process(GO:0046499)
0.1 0.7 GO:0045815 positive regulation of gene expression, epigenetic(GO:0045815)
0.1 0.8 GO:0010189 vitamin E biosynthetic process(GO:0010189) vitamin E metabolic process(GO:0042360)
0.1 2.9 GO:0009902 chloroplast relocation(GO:0009902) establishment of plastid localization(GO:0051667)
0.1 0.3 GO:0000455 enzyme-directed rRNA pseudouridine synthesis(GO:0000455)
0.1 0.4 GO:0000301 retrograde transport, vesicle recycling within Golgi(GO:0000301)
0.1 0.5 GO:0051095 regulation of helicase activity(GO:0051095) positive regulation of helicase activity(GO:0051096)
0.1 0.4 GO:0042549 photosystem II stabilization(GO:0042549)
0.1 0.9 GO:0030522 blue light signaling pathway(GO:0009785) intracellular receptor signaling pathway(GO:0030522)
0.1 0.2 GO:0042908 xenobiotic transport(GO:0042908)
0.1 0.6 GO:0019253 carbon fixation(GO:0015977) reductive pentose-phosphate cycle(GO:0019253)
0.1 2.3 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.1 0.4 GO:0071483 cellular response to blue light(GO:0071483)
0.1 0.4 GO:0045038 protein import into chloroplast thylakoid membrane(GO:0045038)
0.1 0.5 GO:0051955 amine transport(GO:0015837) regulation of organic acid transport(GO:0032890) regulation of amine transport(GO:0051952) regulation of amino acid transport(GO:0051955) regulation of amino acid export(GO:0080143)
0.1 0.2 GO:0090213 regulation of radial pattern formation(GO:0090213)
0.1 0.7 GO:0042177 negative regulation of protein catabolic process(GO:0042177)
0.1 0.2 GO:0031054 pre-miRNA processing(GO:0031054)
0.1 1.9 GO:0006284 base-excision repair(GO:0006284)
0.1 0.3 GO:0010480 microsporocyte differentiation(GO:0010480)
0.1 0.4 GO:0061087 positive regulation of histone H3-K27 methylation(GO:0061087)
0.1 0.2 GO:0090342 regulation of cell aging(GO:0090342)
0.1 0.2 GO:0019048 modulation by virus of host morphology or physiology(GO:0019048)
0.1 1.7 GO:0042026 protein refolding(GO:0042026)
0.1 1.1 GO:0010207 photosystem II assembly(GO:0010207)
0.1 0.2 GO:0009747 hexokinase-dependent signaling(GO:0009747)
0.1 0.3 GO:0009558 embryo sac cellularization(GO:0009558)
0.1 0.4 GO:0019464 glycine decarboxylation via glycine cleavage system(GO:0019464)
0.1 0.1 GO:0042436 tryptophan catabolic process(GO:0006569) indole-containing compound catabolic process(GO:0042436) indolalkylamine catabolic process(GO:0046218)
0.1 0.3 GO:0030007 cellular potassium ion homeostasis(GO:0030007)
0.1 0.2 GO:0019695 choline metabolic process(GO:0019695)
0.1 0.4 GO:0010050 vegetative phase change(GO:0010050)
0.1 0.6 GO:0006002 fructose 6-phosphate metabolic process(GO:0006002)
0.1 0.7 GO:0042793 transcription from plastid promoter(GO:0042793)
0.1 0.2 GO:0042989 sequestering of actin monomers(GO:0042989)
0.1 0.2 GO:0000012 single strand break repair(GO:0000012)
0.1 1.9 GO:0072596 protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596)
0.1 0.2 GO:0050686 negative regulation of mRNA 3'-end processing(GO:0031441) negative regulation of mRNA processing(GO:0050686) negative regulation of mRNA polyadenylation(GO:1900364) negative regulation of mRNA metabolic process(GO:1903312)
0.1 0.7 GO:0009970 cellular response to sulfate starvation(GO:0009970)
0.1 0.5 GO:1903830 magnesium ion transmembrane transport(GO:1903830)
0.0 2.5 GO:0019759 S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762)
0.0 0.4 GO:0032456 endocytic recycling(GO:0032456)
0.0 0.3 GO:0010587 miRNA catabolic process(GO:0010587)
0.0 0.5 GO:0097577 intracellular sequestering of iron ion(GO:0006880) sequestering of iron ion(GO:0097577)
0.0 0.2 GO:0051014 actin filament severing(GO:0051014)
0.0 0.4 GO:0097428 protein maturation by iron-sulfur cluster transfer(GO:0097428)
0.0 0.1 GO:0048464 sepal development(GO:0048442) flower calyx development(GO:0048464)
0.0 0.2 GO:0051289 protein homotetramerization(GO:0051289)
0.0 0.5 GO:0048317 seed morphogenesis(GO:0048317)
0.0 0.2 GO:0019566 arabinose metabolic process(GO:0019566)
0.0 1.4 GO:0007062 sister chromatid cohesion(GO:0007062)
0.0 1.2 GO:0009082 branched-chain amino acid biosynthetic process(GO:0009082)
0.0 0.1 GO:0060776 simple leaf morphogenesis(GO:0060776)
0.0 0.3 GO:0071490 far-red light signaling pathway(GO:0010018) cellular response to far red light(GO:0071490)
0.0 0.9 GO:0043488 regulation of mRNA stability(GO:0043488)
0.0 0.5 GO:0010315 auxin efflux(GO:0010315)
0.0 0.2 GO:0009772 photosynthetic electron transport in photosystem II(GO:0009772)
0.0 0.4 GO:0018026 peptidyl-lysine monomethylation(GO:0018026)
0.0 0.2 GO:0009819 drought recovery(GO:0009819)
0.0 0.4 GO:0050691 regulation of defense response to virus by host(GO:0050691)
0.0 0.2 GO:0009759 indole glucosinolate biosynthetic process(GO:0009759)
0.0 0.2 GO:0070863 regulation of protein exit from endoplasmic reticulum(GO:0070861) positive regulation of protein exit from endoplasmic reticulum(GO:0070863)
0.0 0.3 GO:0009942 longitudinal axis specification(GO:0009942)
0.0 0.6 GO:0048496 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.0 0.2 GO:0006283 transcription-coupled nucleotide-excision repair(GO:0006283)
0.0 0.4 GO:0043171 peptide catabolic process(GO:0043171)
0.0 0.2 GO:0006106 fumarate metabolic process(GO:0006106)
0.0 0.2 GO:2000306 positive regulation of photomorphogenesis(GO:2000306)
0.0 0.2 GO:0006072 glycerol-3-phosphate metabolic process(GO:0006072)
0.0 0.8 GO:0009768 photosynthesis, light harvesting in photosystem I(GO:0009768)
0.0 0.2 GO:0048577 negative regulation of short-day photoperiodism, flowering(GO:0048577)
0.0 0.2 GO:0031930 mitochondria-nucleus signaling pathway(GO:0031930)
0.0 0.2 GO:0006013 mannose metabolic process(GO:0006013)
0.0 0.5 GO:0007602 phototransduction(GO:0007602) detection of light stimulus(GO:0009583) red, far-red light phototransduction(GO:0009585)
0.0 0.1 GO:0015697 quaternary ammonium group transport(GO:0015697)
0.0 0.9 GO:0030042 actin filament depolymerization(GO:0030042)
0.0 1.5 GO:0010286 heat acclimation(GO:0010286)
0.0 0.1 GO:0030242 pexophagy(GO:0030242)
0.0 0.4 GO:0009638 phototropism(GO:0009638)
0.0 1.2 GO:0000122 negative regulation of transcription from RNA polymerase II promoter(GO:0000122)
0.0 0.3 GO:1901000 regulation of response to salt stress(GO:1901000)
0.0 0.2 GO:1900384 regulation of flavonol biosynthetic process(GO:1900384)
0.0 1.4 GO:0090487 toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487)
0.0 0.3 GO:0052317 camalexin biosynthetic process(GO:0010120) camalexin metabolic process(GO:0052317)
0.0 0.5 GO:0006538 glutamate catabolic process(GO:0006538)
0.0 0.3 GO:0010044 response to aluminum ion(GO:0010044)
0.0 0.1 GO:0010271 regulation of chlorophyll catabolic process(GO:0010271) regulation of tetrapyrrole catabolic process(GO:1901404)
0.0 0.2 GO:0043266 regulation of potassium ion transport(GO:0043266)
0.0 0.2 GO:0015804 neutral amino acid transport(GO:0015804)
0.0 0.3 GO:0046685 response to arsenic-containing substance(GO:0046685)
0.0 0.5 GO:0005983 starch catabolic process(GO:0005983)
0.0 0.3 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.0 1.5 GO:0007131 reciprocal meiotic recombination(GO:0007131) reciprocal DNA recombination(GO:0035825)
0.0 0.1 GO:0035305 negative regulation of dephosphorylation(GO:0035305) negative regulation of protein dephosphorylation(GO:0035308)
0.0 0.9 GO:0032784 regulation of DNA-templated transcription, elongation(GO:0032784)
0.0 0.7 GO:0009695 jasmonic acid biosynthetic process(GO:0009695)
0.0 0.3 GO:0071331 cellular response to monosaccharide stimulus(GO:0071326) cellular response to hexose stimulus(GO:0071331)
0.0 1.0 GO:0009816 defense response to bacterium, incompatible interaction(GO:0009816)
0.0 0.2 GO:0015996 chlorophyll catabolic process(GO:0015996)
0.0 0.5 GO:0010928 regulation of auxin mediated signaling pathway(GO:0010928)
0.0 0.1 GO:0031929 TOR signaling(GO:0031929)
0.0 0.5 GO:0071218 cellular response to misfolded protein(GO:0071218)
0.0 0.4 GO:0046855 phosphorylated carbohydrate dephosphorylation(GO:0046838) inositol phosphate dephosphorylation(GO:0046855) inositol phosphate catabolic process(GO:0071545)
0.0 1.0 GO:2000022 regulation of jasmonic acid mediated signaling pathway(GO:2000022)
0.0 0.3 GO:0005987 sucrose catabolic process(GO:0005987)
0.0 0.1 GO:0006556 S-adenosylmethionine biosynthetic process(GO:0006556)
0.0 0.1 GO:0010500 transmitting tissue development(GO:0010500)
0.0 0.1 GO:0045739 positive regulation of DNA repair(GO:0045739)
0.0 0.6 GO:0048574 long-day photoperiodism, flowering(GO:0048574)
0.0 0.4 GO:0019853 L-ascorbic acid metabolic process(GO:0019852) L-ascorbic acid biosynthetic process(GO:0019853)
0.0 1.0 GO:0045292 mRNA cis splicing, via spliceosome(GO:0045292)
0.0 0.1 GO:0048480 style development(GO:0048479) stigma development(GO:0048480)
0.0 0.2 GO:0010109 regulation of photosynthesis(GO:0010109)
0.0 0.2 GO:0008535 respiratory chain complex IV assembly(GO:0008535) mitochondrial respiratory chain complex IV assembly(GO:0033617) mitochondrial respiratory chain complex IV biogenesis(GO:0097034)
0.0 0.1 GO:0080142 regulation of salicylic acid biosynthetic process(GO:0080142)
0.0 0.1 GO:0046391 5-phosphoribose 1-diphosphate biosynthetic process(GO:0006015) 5-phosphoribose 1-diphosphate metabolic process(GO:0046391)
0.0 0.1 GO:0006787 porphyrin-containing compound catabolic process(GO:0006787) tetrapyrrole catabolic process(GO:0033015)
0.0 0.0 GO:1990428 miRNA transport(GO:1990428)
0.0 0.7 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.0 0.1 GO:0000212 meiotic spindle organization(GO:0000212)
0.0 0.5 GO:0009644 response to high light intensity(GO:0009644)
0.0 0.6 GO:0010183 chemotaxis(GO:0006935) pollen tube guidance(GO:0010183) taxis(GO:0042330) positive chemotaxis(GO:0050918)
0.0 0.0 GO:0071480 cellular response to gamma radiation(GO:0071480)
0.0 0.1 GO:0080121 AMP transport(GO:0080121)
0.0 0.1 GO:0032988 ribonucleoprotein complex disassembly(GO:0032988)
0.0 0.1 GO:0010206 photosystem II repair(GO:0010206)
0.0 0.4 GO:0009294 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.0 0.6 GO:0032543 mitochondrial translation(GO:0032543)
0.0 0.3 GO:0048280 vesicle fusion with Golgi apparatus(GO:0048280)
0.0 0.2 GO:2000779 regulation of double-strand break repair(GO:2000779)
0.0 0.2 GO:0006526 arginine biosynthetic process(GO:0006526)
0.0 0.1 GO:0070536 protein K63-linked deubiquitination(GO:0070536)
0.0 1.0 GO:0009873 ethylene-activated signaling pathway(GO:0009873)
0.0 0.1 GO:1904278 regulation of wax biosynthetic process(GO:1904276) positive regulation of wax biosynthetic process(GO:1904278)
0.0 0.1 GO:0006687 glycosylceramide metabolic process(GO:0006677) glucosylceramide metabolic process(GO:0006678) glucosylceramide catabolic process(GO:0006680) glycosphingolipid metabolic process(GO:0006687) glycolipid catabolic process(GO:0019377) glycosylceramide catabolic process(GO:0046477) glycosphingolipid catabolic process(GO:0046479) ceramide catabolic process(GO:0046514)
0.0 0.3 GO:0046513 ceramide biosynthetic process(GO:0046513)
0.0 1.1 GO:0010224 response to UV-B(GO:0010224)
0.0 0.1 GO:0010482 epidermal cell division(GO:0010481) regulation of epidermal cell division(GO:0010482)
0.0 0.3 GO:0009306 protein secretion(GO:0009306)
0.0 0.2 GO:0044003 virus induced gene silencing(GO:0009616) modification by symbiont of host morphology or physiology(GO:0044003) modulation by symbiont of RNA levels in host(GO:0052018) modulation of RNA levels in other organism involved in symbiotic interaction(GO:0052249)
0.0 0.1 GO:0016578 histone deubiquitination(GO:0016578)
0.0 0.1 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
0.0 0.6 GO:0019684 photosynthesis, light reaction(GO:0019684)
0.0 0.4 GO:0009959 negative gravitropism(GO:0009959)
0.0 0.1 GO:1901271 lipid A biosynthetic process(GO:0009245) lipid A metabolic process(GO:0046493) lipooligosaccharide metabolic process(GO:1901269) lipooligosaccharide biosynthetic process(GO:1901271)
0.0 0.1 GO:0009727 detection of ethylene stimulus(GO:0009727) jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway(GO:0009871)
0.0 0.3 GO:0030855 epidermis development(GO:0008544) epidermal cell differentiation(GO:0009913) epithelial cell differentiation(GO:0030855)
0.0 0.3 GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway(GO:0032511)
0.0 0.5 GO:0006995 cellular response to nitrogen starvation(GO:0006995)
0.0 0.2 GO:0010375 stomatal complex patterning(GO:0010375)
0.0 0.1 GO:0007142 male meiosis II(GO:0007142)
0.0 0.2 GO:0006102 isocitrate metabolic process(GO:0006102)
0.0 0.1 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.0 0.1 GO:0030308 negative regulation of cell growth(GO:0030308)
0.0 0.0 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.0 0.5 GO:0048510 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.0 0.1 GO:0048871 multicellular organismal homeostasis(GO:0048871)
0.0 0.2 GO:0006904 vesicle docking involved in exocytosis(GO:0006904)
0.0 0.1 GO:0045836 positive regulation of meiotic nuclear division(GO:0045836)
0.0 0.3 GO:0009718 anthocyanin-containing compound biosynthetic process(GO:0009718)
0.0 0.1 GO:0016560 protein import into peroxisome matrix, docking(GO:0016560) protein to membrane docking(GO:0022615)
0.0 0.1 GO:0009866 induced systemic resistance, ethylene mediated signaling pathway(GO:0009866)
0.0 0.3 GO:0010252 auxin homeostasis(GO:0010252)
0.0 0.1 GO:0031125 rRNA 3'-end processing(GO:0031125)
0.0 0.1 GO:0043447 cellular alkane metabolic process(GO:0043446) alkane biosynthetic process(GO:0043447)
0.0 0.0 GO:0071108 protein K48-linked deubiquitination(GO:0071108)
0.0 0.1 GO:0009610 response to symbiotic fungus(GO:0009610)
0.0 1.5 GO:0009658 chloroplast organization(GO:0009658)
0.0 0.2 GO:0048658 anther wall tapetum development(GO:0048658)
0.0 0.1 GO:0090355 positive regulation of auxin biosynthetic process(GO:0010601) positive regulation of auxin metabolic process(GO:0090355)
0.0 0.5 GO:0016131 phytosteroid metabolic process(GO:0016128) brassinosteroid metabolic process(GO:0016131)
0.0 0.4 GO:0071427 mRNA export from nucleus(GO:0006406) mRNA transport(GO:0051028) mRNA-containing ribonucleoprotein complex export from nucleus(GO:0071427)
0.0 0.7 GO:0006997 nucleus organization(GO:0006997)
0.0 0.2 GO:0043044 ATP-dependent chromatin remodeling(GO:0043044)
0.0 0.1 GO:0016558 protein import into peroxisome matrix(GO:0016558)
0.0 0.1 GO:0009854 oxidative photosynthetic carbon pathway(GO:0009854)
0.0 0.2 GO:0009051 pentose-phosphate shunt, oxidative branch(GO:0009051)
0.0 0.1 GO:0048354 mucilage biosynthetic process involved in seed coat development(GO:0048354)
0.0 0.1 GO:0051865 protein autoubiquitination(GO:0051865)
0.0 0.4 GO:0030705 cytoskeleton-dependent intracellular transport(GO:0030705)
0.0 0.2 GO:0097031 mitochondrial respiratory chain complex I assembly(GO:0032981) mitochondrial respiratory chain complex I biogenesis(GO:0097031)
0.0 0.0 GO:0044208 'de novo' AMP biosynthetic process(GO:0044208)
0.0 0.1 GO:1900057 positive regulation of leaf senescence(GO:1900057)
0.0 0.4 GO:0035304 regulation of protein dephosphorylation(GO:0035304)
0.0 0.2 GO:0006814 sodium ion transport(GO:0006814)
0.0 0.4 GO:0006333 chromatin assembly or disassembly(GO:0006333)
0.0 0.3 GO:0009960 endosperm development(GO:0009960)
0.0 0.3 GO:0060968 regulation of gene silencing(GO:0060968)
0.0 0.2 GO:0000245 spliceosomal complex assembly(GO:0000245)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.2 GO:0000214 tRNA-intron endonuclease complex(GO:0000214)
0.2 2.8 GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598)
0.1 0.4 GO:0005775 vacuolar lumen(GO:0005775)
0.1 1.0 GO:0016593 Cdc73/Paf1 complex(GO:0016593)
0.1 0.3 GO:0030093 chloroplast photosystem I(GO:0030093)
0.1 0.3 GO:0060293 P granule(GO:0043186) pole plasm(GO:0045495) germ plasm(GO:0060293)
0.1 2.0 GO:0098807 chloroplast thylakoid membrane protein complex(GO:0098807)
0.1 0.2 GO:0000311 plastid large ribosomal subunit(GO:0000311)
0.1 0.5 GO:0042645 mitochondrial nucleoid(GO:0042645)
0.1 0.5 GO:0030915 Smc5-Smc6 complex(GO:0030915)
0.1 0.4 GO:0031932 TORC2 complex(GO:0031932)
0.1 0.3 GO:0097550 transcriptional preinitiation complex(GO:0097550)
0.1 0.3 GO:0005853 eukaryotic translation elongation factor 1 complex(GO:0005853)
0.1 0.2 GO:1990298 bub1-bub3 complex(GO:1990298)
0.1 1.4 GO:0009508 plastid chromosome(GO:0009508)
0.1 1.7 GO:0035097 histone methyltransferase complex(GO:0035097)
0.1 0.3 GO:0000427 plastid-encoded plastid RNA polymerase complex(GO:0000427)
0.1 0.3 GO:0034657 GID complex(GO:0034657)
0.1 0.6 GO:0031519 PcG protein complex(GO:0031519)
0.1 0.3 GO:0033263 CORVET complex(GO:0033263)
0.1 0.3 GO:0010007 magnesium chelatase complex(GO:0010007)
0.1 0.2 GO:0010316 pyrophosphate-dependent phosphofructokinase complex(GO:0010316)
0.1 0.5 GO:0070390 transcription export complex 2(GO:0070390)
0.1 0.5 GO:0009538 photosystem I reaction center(GO:0009538)
0.1 1.3 GO:0009654 photosystem II oxygen evolving complex(GO:0009654)
0.1 0.7 GO:0008023 transcription elongation factor complex(GO:0008023)
0.1 0.1 GO:0009533 chloroplast stromal thylakoid(GO:0009533)
0.1 0.5 GO:0009547 plastid ribosome(GO:0009547)
0.1 0.2 GO:0005655 ribonuclease MRP complex(GO:0000172) nucleolar ribonuclease P complex(GO:0005655) multimeric ribonuclease P complex(GO:0030681)
0.1 13.7 GO:0009535 chloroplast thylakoid membrane(GO:0009535)
0.0 0.5 GO:0010168 ER body(GO:0010168)
0.0 0.2 GO:0005776 autophagosome(GO:0005776)
0.0 0.2 GO:0000835 ER ubiquitin ligase complex(GO:0000835) Hrd1p ubiquitin ligase complex(GO:0000836) Hrd1p ubiquitin ligase ERAD-L complex(GO:0000839)
0.0 0.5 GO:0008278 cohesin complex(GO:0008278)
0.0 0.3 GO:0042406 extrinsic component of endoplasmic reticulum membrane(GO:0042406)
0.0 2.3 GO:0009707 chloroplast outer membrane(GO:0009707)
0.0 0.2 GO:0000811 GINS complex(GO:0000811)
0.0 3.3 GO:0009534 chloroplast thylakoid(GO:0009534)
0.0 0.2 GO:0030141 secretory granule(GO:0030141)
0.0 1.9 GO:0005875 microtubule associated complex(GO:0005875)
0.0 0.5 GO:0000776 kinetochore(GO:0000776)
0.0 0.4 GO:0005844 polysome(GO:0005844)
0.0 1.1 GO:0000152 nuclear ubiquitin ligase complex(GO:0000152)
0.0 0.6 GO:0031965 nuclear membrane(GO:0031965)
0.0 0.1 GO:0031907 peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.0 0.3 GO:0071014 post-mRNA release spliceosomal complex(GO:0071014)
0.0 0.2 GO:0005677 chromatin silencing complex(GO:0005677)
0.0 2.0 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.0 0.1 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)
0.0 1.6 GO:0016607 nuclear speck(GO:0016607)
0.0 1.4 GO:0031201 SNARE complex(GO:0031201)
0.0 0.2 GO:0005884 actin filament(GO:0005884)
0.0 0.2 GO:0035619 root hair tip(GO:0035619)
0.0 0.1 GO:0034271 phosphatidylinositol 3-kinase complex(GO:0005942) phosphatidylinositol 3-kinase complex, class III, type I(GO:0034271) phosphatidylinositol 3-kinase complex, class III, type II(GO:0034272) phosphatidylinositol 3-kinase complex, class III(GO:0035032)
0.0 0.4 GO:0016459 myosin complex(GO:0016459)
0.0 0.2 GO:0030014 CCR4-NOT complex(GO:0030014)
0.0 0.1 GO:0070552 BRCA1-A complex(GO:0070531) BRISC complex(GO:0070552)
0.0 0.1 GO:0002189 ribose phosphate diphosphokinase complex(GO:0002189)
0.0 0.5 GO:0005665 DNA-directed RNA polymerase II, core complex(GO:0005665)
0.0 0.2 GO:0016514 SWI/SNF complex(GO:0016514) BAF-type complex(GO:0090544)
0.0 0.8 GO:0016592 mediator complex(GO:0016592)
0.0 0.4 GO:0000315 organellar large ribosomal subunit(GO:0000315)
0.0 0.1 GO:0030127 COPII vesicle coat(GO:0030127)
0.0 0.1 GO:0005697 telomerase holoenzyme complex(GO:0005697)
0.0 0.3 GO:0016602 CCAAT-binding factor complex(GO:0016602)
0.0 0.2 GO:0009574 preprophase band(GO:0009574)
0.0 0.2 GO:0000786 nucleosome(GO:0000786)
0.0 0.0 GO:0005876 kinetochore microtubule(GO:0005828) spindle microtubule(GO:0005876)
0.0 0.4 GO:0019898 extrinsic component of membrane(GO:0019898)
0.0 0.3 GO:0000118 histone deacetylase complex(GO:0000118)
0.0 0.5 GO:0005881 cytoplasmic microtubule(GO:0005881)
0.0 4.2 GO:0042579 peroxisome(GO:0005777) microbody(GO:0042579)
0.0 0.6 GO:0031969 chloroplast membrane(GO:0031969)
0.0 0.1 GO:0005787 signal peptidase complex(GO:0005787)
0.0 0.2 GO:0048471 perinuclear region of cytoplasm(GO:0048471)
0.0 0.2 GO:0030125 clathrin vesicle coat(GO:0030125)
0.0 0.1 GO:0000314 organellar small ribosomal subunit(GO:0000314)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 2.0 GO:0004350 glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350)
0.3 1.3 GO:0008301 DNA binding, bending(GO:0008301)
0.3 1.2 GO:0047158 sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity(GO:0047158)
0.3 1.2 GO:0000213 tRNA-intron endonuclease activity(GO:0000213)
0.3 0.8 GO:0043325 phosphatidylinositol-3,4-bisphosphate binding(GO:0043325)
0.2 1.0 GO:0016165 linoleate 13S-lipoxygenase activity(GO:0016165)
0.2 0.7 GO:0004353 glutamate dehydrogenase [NAD(P)+] activity(GO:0004353)
0.2 1.6 GO:0016815 nitrilase activity(GO:0000257) hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles(GO:0016815) nitrile hydratase activity(GO:0018822) indole-3-acetonitrile nitrilase activity(GO:0080061)
0.2 0.4 GO:0016630 protochlorophyllide reductase activity(GO:0016630)
0.2 0.9 GO:0030410 nicotianamine synthase activity(GO:0030410)
0.2 0.8 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
0.2 1.6 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.2 1.0 GO:0003959 NADPH dehydrogenase activity(GO:0003959)
0.2 0.9 GO:0004148 dihydrolipoyl dehydrogenase activity(GO:0004148)
0.2 0.7 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.2 0.5 GO:0004476 mannose-6-phosphate isomerase activity(GO:0004476)
0.2 0.8 GO:0046577 long-chain-alcohol oxidase activity(GO:0046577)
0.2 0.8 GO:0035620 ceramide transporter activity(GO:0035620) sphingolipid transporter activity(GO:0046624) ceramide 1-phosphate binding(GO:1902387) ceramide 1-phosphate transporter activity(GO:1902388)
0.2 0.9 GO:0030544 Hsp70 protein binding(GO:0030544)
0.2 0.6 GO:0000268 peroxisome targeting sequence binding(GO:0000268)
0.2 1.2 GO:0003997 acyl-CoA oxidase activity(GO:0003997)
0.2 0.5 GO:0050403 trans-zeatin O-beta-D-glucosyltransferase activity(GO:0050403) cis-zeatin O-beta-D-glucosyltransferase activity(GO:0050502)
0.1 0.4 GO:0003986 acetyl-CoA hydrolase activity(GO:0003986)
0.1 0.4 GO:0019779 Atg8 ligase activity(GO:0019776) Atg8 activating enzyme activity(GO:0019779)
0.1 0.6 GO:0004829 threonine-tRNA ligase activity(GO:0004829)
0.1 0.4 GO:0052635 C-20 gibberellin 2-beta-dioxygenase activity(GO:0052635)
0.1 0.6 GO:0009973 adenylyl-sulfate reductase activity(GO:0009973) adenylyl-sulfate reductase (glutathione) activity(GO:0033741)
0.1 0.4 GO:0050736 O-malonyltransferase activity(GO:0050736)
0.1 1.9 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.1 1.4 GO:0034647 histone demethylase activity (H3-K4 specific)(GO:0032453) histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647)
0.1 0.4 GO:0008311 phosphodiesterase I activity(GO:0004528) double-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008311)
0.1 0.4 GO:0010242 oxygen evolving activity(GO:0010242)
0.1 0.5 GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity(GO:0042132)
0.1 0.7 GO:0005483 soluble NSF attachment protein activity(GO:0005483)
0.1 0.5 GO:0050815 phosphoserine binding(GO:0050815) RNA polymerase II C-terminal domain phosphoserine binding(GO:1990269)
0.1 0.6 GO:0004028 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028)
0.1 0.3 GO:0070678 preprotein binding(GO:0070678)
0.1 0.8 GO:0003917 DNA topoisomerase type I activity(GO:0003917)
0.1 1.9 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.1 0.4 GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity(GO:0015018)
0.1 0.4 GO:0047782 coniferin beta-glucosidase activity(GO:0047782)
0.1 0.5 GO:0022841 leak channel activity(GO:0022840) potassium ion leak channel activity(GO:0022841) narrow pore channel activity(GO:0022842)
0.1 0.9 GO:0016464 chloroplast protein-transporting ATPase activity(GO:0016464)
0.1 0.4 GO:0004335 galactokinase activity(GO:0004335)
0.1 0.4 GO:0042781 3'-tRNA processing endoribonuclease activity(GO:0042781)
0.1 0.5 GO:0050113 inositol oxygenase activity(GO:0050113)
0.1 0.4 GO:0046423 allene-oxide cyclase activity(GO:0046423)
0.1 0.3 GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity(GO:0050567)
0.1 0.4 GO:0004813 alanine-tRNA ligase activity(GO:0004813)
0.1 0.3 GO:0010297 heteropolysaccharide binding(GO:0010297)
0.1 0.5 GO:0004614 phosphoglucomutase activity(GO:0004614)
0.1 0.3 GO:0031071 cysteine desulfurase activity(GO:0031071)
0.1 0.4 GO:0004534 5'-3' exoribonuclease activity(GO:0004534)
0.1 0.4 GO:0043024 ribosomal small subunit binding(GO:0043024)
0.1 0.6 GO:0004345 glucose-6-phosphate dehydrogenase activity(GO:0004345)
0.1 1.0 GO:0000293 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.1 0.3 GO:0052692 alpha-galactosidase activity(GO:0004557) raffinose alpha-galactosidase activity(GO:0052692)
0.1 1.3 GO:0000993 RNA polymerase II core binding(GO:0000993)
0.1 0.3 GO:0002151 G-quadruplex RNA binding(GO:0002151)
0.1 0.2 GO:0004014 adenosylmethionine decarboxylase activity(GO:0004014)
0.1 1.0 GO:0009044 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.1 0.5 GO:0050105 L-gulonolactone oxidase activity(GO:0050105)
0.1 1.4 GO:0004525 ribonuclease III activity(GO:0004525) double-stranded RNA-specific ribonuclease activity(GO:0032296)
0.1 0.8 GO:0008725 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.1 0.7 GO:0004096 catalase activity(GO:0004096)
0.1 0.4 GO:0016312 inositol bisphosphate phosphatase activity(GO:0016312)
0.1 0.2 GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase(GO:0008839)
0.1 0.9 GO:0002020 protease binding(GO:0002020)
0.1 3.6 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.1 0.2 GO:0070259 tyrosyl-DNA phosphodiesterase activity(GO:0070259)
0.1 0.3 GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227)
0.1 0.3 GO:0004556 alpha-amylase activity(GO:0004556)
0.1 0.3 GO:0050291 sphingosine N-acyltransferase activity(GO:0050291)
0.1 0.4 GO:0051765 inositol tetrakisphosphate kinase activity(GO:0051765)
0.1 0.3 GO:0015186 L-glutamine transmembrane transporter activity(GO:0015186)
0.1 0.3 GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity(GO:0003857)
0.1 0.6 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.1 1.2 GO:0003951 NAD+ kinase activity(GO:0003951)
0.1 0.4 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.1 0.8 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.1 0.3 GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity(GO:0045156)
0.1 0.2 GO:0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity(GO:0047334)
0.1 0.8 GO:0004575 sucrose alpha-glucosidase activity(GO:0004575)
0.1 0.2 GO:0030941 chloroplast targeting sequence binding(GO:0030941)
0.1 0.1 GO:0080045 quercetin 3'-O-glucosyltransferase activity(GO:0080045)
0.1 0.3 GO:0015367 oxoglutarate:malate antiporter activity(GO:0015367)
0.1 0.8 GO:0030674 protein binding, bridging(GO:0030674)
0.1 0.3 GO:0030371 translation repressor activity(GO:0030371)
0.1 0.2 GO:0003785 actin monomer binding(GO:0003785)
0.1 0.4 GO:0003872 6-phosphofructokinase activity(GO:0003872)
0.1 2.0 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.1 0.3 GO:0016851 magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003)
0.1 0.3 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)
0.0 1.0 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.0 0.8 GO:0015114 phosphate ion transmembrane transporter activity(GO:0015114)
0.0 0.1 GO:0004742 dihydrolipoyllysine-residue acetyltransferase activity(GO:0004742) S-acetyltransferase activity(GO:0016418)
0.0 0.2 GO:0050302 aryl-aldehyde oxidase activity(GO:0018488) indole-3-acetaldehyde oxidase activity(GO:0050302)
0.0 0.9 GO:0005199 structural constituent of cell wall(GO:0005199)
0.0 0.7 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.0 0.1 GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0033764)
0.0 0.8 GO:0016868 intramolecular transferase activity, phosphotransferases(GO:0016868)
0.0 0.3 GO:0033836 flavonol 7-O-beta-glucosyltransferase activity(GO:0033836)
0.0 0.1 GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor(GO:0052592)
0.0 0.4 GO:0015198 peptide transporter activity(GO:0015197) oligopeptide transporter activity(GO:0015198)
0.0 0.4 GO:0070300 phosphatidic acid binding(GO:0070300)
0.0 0.3 GO:0017108 5'-flap endonuclease activity(GO:0017108)
0.0 0.3 GO:0008157 protein phosphatase 1 binding(GO:0008157)
0.0 0.4 GO:0004602 glutathione peroxidase activity(GO:0004602)
0.0 0.2 GO:1902417 (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity(GO:1902417)
0.0 0.4 GO:0004029 aldehyde dehydrogenase (NAD) activity(GO:0004029)
0.0 0.3 GO:0001046 core promoter sequence-specific DNA binding(GO:0001046) core promoter binding(GO:0001047)
0.0 5.6 GO:0000989 transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712)
0.0 0.2 GO:0004113 cyclic-nucleotide phosphodiesterase activity(GO:0004112) 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity(GO:0004113)
0.0 0.1 GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity(GO:0000179)
0.0 1.6 GO:0004222 metalloendopeptidase activity(GO:0004222)
0.0 0.2 GO:0004400 histidinol-phosphate transaminase activity(GO:0004400)
0.0 0.3 GO:0008177 succinate dehydrogenase (ubiquinone) activity(GO:0008177)
0.0 0.4 GO:0016688 L-ascorbate peroxidase activity(GO:0016688)
0.0 0.2 GO:0047780 citrate dehydratase activity(GO:0047780)
0.0 0.4 GO:0010294 abscisic acid glucosyltransferase activity(GO:0010294)
0.0 0.3 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.0 2.2 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
0.0 0.5 GO:0004084 branched-chain-amino-acid transaminase activity(GO:0004084)
0.0 0.2 GO:0004333 fumarate hydratase activity(GO:0004333)
0.0 0.4 GO:0004860 protein kinase inhibitor activity(GO:0004860)
0.0 0.3 GO:0060090 binding, bridging(GO:0060090)
0.0 0.6 GO:0008106 alcohol dehydrogenase (NADP+) activity(GO:0008106)
0.0 0.2 GO:0035197 siRNA binding(GO:0035197)
0.0 0.2 GO:0015172 acidic amino acid transmembrane transporter activity(GO:0015172)
0.0 0.3 GO:0043495 protein anchor(GO:0043495)
0.0 0.8 GO:0004565 beta-galactosidase activity(GO:0004565) galactosidase activity(GO:0015925)
0.0 0.1 GO:0046920 alpha-(1->3)-fucosyltransferase activity(GO:0046920)
0.0 0.3 GO:0017022 myosin binding(GO:0017022)
0.0 0.4 GO:0003730 mRNA 3'-UTR binding(GO:0003730)
0.0 0.2 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.0 1.7 GO:0004364 glutathione transferase activity(GO:0004364)
0.0 0.3 GO:0002161 aminoacyl-tRNA editing activity(GO:0002161)
0.0 0.3 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
0.0 0.7 GO:0004673 protein histidine kinase activity(GO:0004673) phosphotransferase activity, nitrogenous group as acceptor(GO:0016775)
0.0 0.1 GO:1990465 octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465)
0.0 0.3 GO:0008199 ferric iron binding(GO:0008199)
0.0 0.2 GO:0030527 structural constituent of chromatin(GO:0030527)
0.0 0.7 GO:0005345 purine nucleobase transmembrane transporter activity(GO:0005345)
0.0 0.5 GO:0005384 manganese ion transmembrane transporter activity(GO:0005384)
0.0 0.1 GO:0070034 telomerase RNA binding(GO:0070034)
0.0 0.1 GO:0042800 histone methyltransferase activity (H3-K4 specific)(GO:0042800)
0.0 0.2 GO:0004559 alpha-mannosidase activity(GO:0004559)
0.0 0.1 GO:0031957 very long-chain fatty acid-CoA ligase activity(GO:0031957)
0.0 0.2 GO:0004526 ribonuclease P activity(GO:0004526)
0.0 0.6 GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 0.1 GO:0004478 methionine adenosyltransferase activity(GO:0004478)
0.0 0.2 GO:1990137 plant seed peroxidase activity(GO:1990137)
0.0 0.5 GO:0044183 protein binding involved in protein folding(GO:0044183)
0.0 0.2 GO:0043424 protein histidine kinase binding(GO:0043424)
0.0 0.1 GO:0004749 ribose phosphate diphosphokinase activity(GO:0004749)
0.0 0.2 GO:0004566 beta-glucuronidase activity(GO:0004566)
0.0 0.2 GO:0098847 single-stranded telomeric DNA binding(GO:0043047) sequence-specific single stranded DNA binding(GO:0098847)
0.0 0.1 GO:0070063 RNA polymerase binding(GO:0070063)
0.0 1.6 GO:0003724 RNA helicase activity(GO:0003724)
0.0 0.3 GO:0008327 methyl-CpG binding(GO:0008327)
0.0 0.1 GO:0050734 hydroxycinnamoyltransferase activity(GO:0050734)
0.0 0.5 GO:0016168 chlorophyll binding(GO:0016168)
0.0 0.2 GO:0004045 aminoacyl-tRNA hydrolase activity(GO:0004045)
0.0 0.1 GO:0004348 glucosylceramidase activity(GO:0004348)
0.0 0.2 GO:0019902 phosphatase binding(GO:0019902)
0.0 0.3 GO:0019200 carbohydrate kinase activity(GO:0019200)
0.0 0.0 GO:0030332 cyclin binding(GO:0030332)
0.0 0.1 GO:0004392 heme oxygenase (decyclizing) activity(GO:0004392)
0.0 0.2 GO:0019905 syntaxin binding(GO:0019905)
0.0 0.2 GO:0004930 G-protein coupled receptor activity(GO:0004930)
0.0 0.2 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.0 0.1 GO:0043539 protein serine/threonine kinase activator activity(GO:0043539)
0.0 0.2 GO:0009927 histidine phosphotransfer kinase activity(GO:0009927)
0.0 0.1 GO:0042171 1-acylglycerol-3-phosphate O-acyltransferase activity(GO:0003841) lysophosphatidic acid acyltransferase activity(GO:0042171)
0.0 0.5 GO:0016776 phosphotransferase activity, phosphate group as acceptor(GO:0016776)
0.0 0.0 GO:0015462 protein-transmembrane transporting ATPase activity(GO:0015462)
0.0 0.1 GO:0052853 very-long-chain-(S)-2-hydroxy-acid oxidase activity(GO:0052852) long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity(GO:0052853) medium-chain-(S)-2-hydroxy-acid oxidase activity(GO:0052854)
0.0 0.0 GO:1990380 Lys48-specific deubiquitinase activity(GO:1990380)
0.0 0.0 GO:0010354 homogentisate prenyltransferase activity(GO:0010354)
0.0 5.5 GO:0004842 ubiquitin-protein transferase activity(GO:0004842)
0.0 0.3 GO:0031491 nucleosome binding(GO:0031491)
0.0 1.6 GO:0046982 protein heterodimerization activity(GO:0046982)
0.0 0.2 GO:0051117 ATPase binding(GO:0051117)
0.0 0.1 GO:0047134 protein-disulfide reductase activity(GO:0047134)
0.0 0.5 GO:0022884 protein transmembrane transporter activity(GO:0008320) macromolecule transmembrane transporter activity(GO:0022884)
0.0 0.7 GO:0005484 SNAP receptor activity(GO:0005484)
0.0 0.1 GO:0030267 glyoxylate reductase (NADP) activity(GO:0030267)
0.0 0.5 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899)
0.0 0.1 GO:0032440 2-alkenal reductase [NAD(P)] activity(GO:0032440)
0.0 0.0 GO:0016842 amidine-lyase activity(GO:0016842)
0.0 0.2 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 0.1 GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds(GO:0016863)
0.0 0.0 GO:0080106 3-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080102) 5-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080104) 7-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080106)
0.0 0.6 GO:0003727 single-stranded RNA binding(GO:0003727)
0.0 0.4 GO:0016278 lysine N-methyltransferase activity(GO:0016278) protein-lysine N-methyltransferase activity(GO:0016279)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 PID CIRCADIAN PATHWAY Circadian rhythm pathway
0.1 0.4 PID P53 REGULATION PATHWAY p53 pathway
0.1 0.8 PID E2F PATHWAY E2F transcription factor network
0.1 0.2 PID SMAD2 3NUCLEAR PATHWAY Regulation of nuclear SMAD2/3 signaling
0.1 0.2 SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES Genes related to regulation of the actin cytoskeleton
0.1 0.5 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network
0.0 0.2 PID S1P S1P1 PATHWAY S1P1 pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE Genes involved in mRNA Decay by 5' to 3' Exoribonuclease
0.2 0.5 REACTOME PURINE METABOLISM Genes involved in Purine metabolism
0.2 0.5 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.1 0.6 REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression
0.1 0.8 REACTOME G0 AND EARLY G1 Genes involved in G0 and Early G1
0.1 0.1 REACTOME METABOLISM OF MRNA Genes involved in Metabolism of mRNA
0.1 1.1 REACTOME PPARA ACTIVATES GENE EXPRESSION Genes involved in PPARA Activates Gene Expression
0.1 0.5 REACTOME GLUCOSE METABOLISM Genes involved in Glucose metabolism
0.1 0.3 REACTOME PEROXISOMAL LIPID METABOLISM Genes involved in Peroxisomal lipid metabolism
0.1 0.2 REACTOME SIGNALING BY ROBO RECEPTOR Genes involved in Signaling by Robo receptor
0.0 0.2 REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle
0.0 0.1 REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA Genes involved in Processing of Capped Intron-Containing Pre-mRNA
0.0 0.1 REACTOME G2 M DNA DAMAGE CHECKPOINT Genes involved in G2/M DNA damage checkpoint
0.0 0.1 REACTOME DOUBLE STRAND BREAK REPAIR Genes involved in Double-Strand Break Repair