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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G08520
Z-value: 1.24
Transcription factors associated with AT5G08520
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G08520
|
AT5G08520 | Duplicated homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G08520 | arTal_v1_Chr5_-_2758540_2758540 | 0.47 | 8.7e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_+_18347765_18347765 Show fit | 1.72 |
AT2G44460.2
|
beta glucosidase 28 |
|
| arTal_v1_Chr2_+_18346306_18346306 Show fit | 1.68 |
AT2G44460.1
|
beta glucosidase 28 |
|
| arTal_v1_Chr2_-_6493512_6493512 Show fit | 1.37 |
AT2G15020.1
|
hypothetical protein |
|
| arTal_v1_Chr4_+_16944878_16944941 Show fit | 1.20 |
AT4G35770.1
AT4G35770.2 AT4G35770.5 AT4G35770.6 AT4G35770.4 AT4G35770.3 |
Rhodanese/Cell cycle control phosphatase superfamily protein |
|
| arTal_v1_Chr4_-_2992618_2992618 Show fit | 1.20 |
AT4G05631.1
|
hypothetical protein |
|
| arTal_v1_Chr2_+_9254378_9254378 Show fit | 1.19 |
AT2G21640.1
|
marker for oxidative stress response protein |
|
| arTal_v1_Chr5_-_20204595_20204595 Show fit | 1.16 |
AT5G49730.1
AT5G49730.2 |
ferric reduction oxidase 6 |
|
| arTal_v1_Chr4_-_10591546_10591633 Show fit | 1.14 |
AT4G19420.3
AT4G19420.2 AT4G19420.1 |
Pectinacetylesterase family protein |
|
| arTal_v1_Chr1_-_20310850_20310850 Show fit | 1.14 |
AT1G54410.1
|
dehydrin family protein |
|
| arTal_v1_Chr2_+_239669_239669 Show fit | 1.14 |
AT2G01530.1
|
MLP-like protein 329 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G08520
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.9 | GO:0010244 | response to low fluence blue light stimulus by blue low-fluence system(GO:0010244) |
| 0.1 | 2.9 | GO:0009902 | chloroplast relocation(GO:0009902) establishment of plastid localization(GO:0051667) |
| 0.1 | 2.6 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 0.0 | 2.5 | GO:0019759 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.1 | 2.4 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.1 | 2.3 | GO:0000413 | protein peptidyl-prolyl isomerization(GO:0000413) |
| 0.5 | 2.2 | GO:0010322 | regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0010322) |
| 0.3 | 2.0 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.1 | 1.9 | GO:0006284 | base-excision repair(GO:0006284) |
| 0.1 | 1.9 | GO:0072596 | protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 13.7 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.0 | 4.2 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 3.3 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.2 | 2.8 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
| 0.0 | 2.3 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.1 | 2.0 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
| 0.0 | 2.0 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.0 | 1.9 | GO:0005875 | microtubule associated complex(GO:0005875) |
| 0.1 | 1.7 | GO:0035097 | histone methyltransferase complex(GO:0035097) |
| 0.0 | 1.6 | GO:0016607 | nuclear speck(GO:0016607) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.6 | GO:0000989 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
| 0.0 | 5.5 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 3.6 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.0 | 2.2 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 0.5 | 2.0 | GO:0004350 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) |
| 0.1 | 2.0 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.1 | 1.9 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.1 | 1.9 | GO:0003825 | alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825) |
| 0.0 | 1.7 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.2 | 1.6 | GO:0016815 | nitrilase activity(GO:0000257) hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles(GO:0016815) nitrile hydratase activity(GO:0018822) indole-3-acetonitrile nitrilase activity(GO:0080061) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.6 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.1 | 0.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.4 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.1 | 0.2 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.1 | 0.2 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
| 0.0 | 0.2 | PID S1P S1P1 PATHWAY | S1P1 pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.1 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.1 | 0.8 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.2 | 0.7 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.1 | 0.6 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.2 | 0.5 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.2 | 0.5 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 0.5 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
| 0.1 | 0.3 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.2 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
| 0.0 | 0.2 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |