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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G08330

Z-value: 0.82

Transcription factors associated with AT5G08330

Gene Symbol Gene ID Gene Info
AT5G08330
AT5G08330 TCP family transcription factor

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
TCP11arTal_v1_Chr5_+_2680401_26804010.303.0e-01Click!

Activity profile of AT5G08330 motif

Sorted Z-values of AT5G08330 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_-_7406994 0.59 AT4G12480.1
EARLI1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_-_25176230 0.51 AT1G67265.1
RTFL21
ROTUNDIFOLIA like 21
Chr1_+_23953099 0.50 AT1G64500.1
AT1G64500
Glutaredoxin family protein
Chr2_-_8971339 0.50 AT2G20835.1
AT2G20835
hypothetical protein
Chr3_-_3963984 0.45 AT3G12500.1
HCHIB
basic chitinase
Chr4_-_7401951 0.44 AT4G12470.1
AZI1
azelaic acid induced 1
Chr4_+_2505979 0.43 AT4G04925.1
AT4G04925
transmembrane protein
Chr5_-_1994824 0.41 AT5G06530.2
AT5G06530.3
AT5G06530.4
AT5G06530.1
ABCG22
ABC-2 type transporter family protein
Chr2_-_14778933 0.40 AT2G35060.4
AT2G35060.2
AT2G35060.3
AT2G35060.1
KUP11
K+ uptake permease 11
Chr5_+_8589457 0.39 AT5G24930.1
COL4
zinc finger CONSTANS-like protein
Chr5_+_19081458 0.38 AT5G47020.1
AT5G47020
MraZ
Chr3_+_10061009 0.38 AT3G27250.1
AT3G27250.2
AT3G27250
hypothetical protein
Chr1_-_30142697 0.38 AT1G80130.1
AT1G80130
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_-_14820595 0.35 AT4G30270.1
XTH24
xyloglucan endotransglucosylase/hydrolase 24
Chr1_+_27778984 0.35 AT1G73870.1
BBX16
B-box type zinc finger protein with CCT domain-containing protein
Chr3_+_10576961 0.34 AT3G28310.1
AT3G28310
hypothetical protein (DUF677)
Chr2_+_17704741 0.34 AT2G42520.1
AT2G42520.2
AT2G42520
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_+_10103866 0.34 AT4G18280.1
AT4G18280
glycine-rich cell wall protein-like protein
Chr3_+_1840714 0.31 AT3G06090.1
AT3G06090
transmembrane protein
Chr1_+_29220349 0.31 AT1G77740.1
PIP5K2
phosphatidylinositol-4-phosphate 5-kinase 2
Chr2_+_13647699 0.31 AT2G32100.1
OFP16
ovate family protein 16
Chr1_+_1762145 0.30 AT1G05835.1
AT1G05835
PHD finger protein
Chr3_+_15567067 0.30 AT3G43670.1
AT3G43670
Copper amine oxidase family protein
Chr4_+_17524461 0.29 AT4G37240.1
AT4G37240
HTH-type transcriptional regulator
Chr1_+_25775731 0.29 AT1G68650.1
AT1G68650
Uncharacterized protein family (UPF0016)
Chr1_-_6196343 0.29 AT1G18000.1
AT1G18000
Major facilitator superfamily protein
Chr2_+_17705198 0.29 AT2G42520.3
AT2G42520
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_+_21639978 0.28 AT3G58510.1
AT3G58510.3
AT3G58510.2
AT3G58510
DEA(D/H)-box RNA helicase family protein
Chr1_-_5265103 0.28 AT1G15290.2
AT1G15290.1
AT1G15290
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_-_28554810 0.28 AT1G76100.1
AT1G76100.2
PETE1
plastocyanin 1
Chr1_+_29220538 0.28 AT1G77740.2
PIP5K2
phosphatidylinositol-4-phosphate 5-kinase 2
Chr3_+_5756356 0.28 AT3G16857.3
RR1
response regulator 1
Chr3_+_5755714 0.28 AT3G16857.1
AT3G16857.2
RR1
response regulator 1
Chr5_+_1912013 0.28 AT5G06270.2
AT5G06270.1
AT5G06270
hypothetical protein
Chr3_-_1990244 0.27 AT3G06480.1
AT3G06480.2
AT3G06480
DEAD box RNA helicase family protein
Chr2_-_17837618 0.27 AT2G42870.1
PAR1
phy rapidly regulated 1
Chr1_-_12957090 0.27 AT1G35310.1
MLP168
MLP-like protein 168
Chr4_+_13812989 0.26 AT4G27657.1
AT4G27657
hypothetical protein
Chr5_+_14750318 0.26 AT5G37250.2
AT5G37250.1
AT5G37250
RING/U-box superfamily protein
Chr1_-_355021 0.26 AT1G02020.3
AT1G02020.2
AT1G02020.1
AT1G02020
nitroreductase family protein
Chr1_-_21581165 0.25 AT1G58235.2
AT1G58235
hypothetical protein
Chr1_+_3019639 0.25 AT1G09350.1
GolS3
galactinol synthase 3
Chr4_-_14439723 0.25 AT4G29310.1
AT4G29310.2
AT4G29310
DUF1005 family protein (DUF1005)
Chr1_-_21635344 0.25 AT1G58320.1
AT1G58320
PLAC8 family protein
Chr2_-_18821889 0.25 AT2G45680.1
TCP9
TCP family transcription factor
Chr5_+_24248920 0.25 AT5G60220.1
TET4
tetraspanin4
Chr1_+_5410908 0.25 AT1G15740.1
AT1G15740
Leucine-rich repeat family protein
Chr1_-_21580766 0.25 AT1G58235.1
AT1G58235
hypothetical protein
Chr2_+_9917443 0.24 AT2G23310.1
AT2G23310.2
ATRER1C1
Rer1 family protein
Chr5_-_23896702 0.24 AT5G59220.2
HAI1
PP2C protein (Clade A protein phosphatases type 2C)
Chr4_+_11545631 0.24 AT4G21740.1
AT4G21740
transmembrane protein
Chr2_-_17202848 0.24 AT2G41250.1
AT2G41250
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_+_4433605 0.24 AT1G12990.1
AT1G12990
beta-1,4-N-acetylglucosaminyltransferase family protein
Chr3_+_3470304 0.24 AT3G11080.1
AT3G11080.2
RLP35
receptor like protein 35
Chr4_-_13729002 0.24 AT4G27450.1
AT4G27450
aluminum induced protein with YGL and LRDR motifs
Chr5_-_23896939 0.24 AT5G59220.1
HAI1
PP2C protein (Clade A protein phosphatases type 2C)
Chr5_-_20940895 0.23 AT5G51550.1
EXL3
EXORDIUM like 3
Chr5_+_24301549 0.23 AT5G60430.2
AT5G60430.1
AT5G60430.3
AT5G60430.4
AT5G60430
antiporter/ drug transporter
Chr5_+_2680401 0.23 AT5G08330.1
TCP11
TCP family transcription factor
Chr1_+_7493213 0.23 AT1G21400.3
AT1G21400.2
AT1G21400.5
AT1G21400.4
AT1G21400.6
AT1G21400.1
AT1G21400
Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
Chr5_+_16725753 0.23 AT5G41790.2
CIP1
COP1-interactive protein 1
Chr1_-_16515138 0.23 AT1G43740.1
AT1G43740

Chr1_-_17252452 0.23 AT1G46552.1
AT1G46552

Chr3_+_5243432 0.23 AT3G15510.1
NAC2
NAC domain containing protein 2
Chr4_-_18173840 0.23 AT4G39000.1
GH9B17
glycosyl hydrolase 9B17
Chr3_-_17180559 0.23 AT3G46620.1
RDUF1
zinc finger (C3HC4-type RING finger) family protein
Chr1_-_5858446 0.22 AT1G17140.1
AT1G17140.2
ICR1
interactor of constitutive active rops 1
Chr1_-_9043855 0.22 AT1G26150.1
PERK10
proline-rich extensin-like receptor kinase 10
Chr1_+_7065494 0.22 AT1G20390.1
AT1G20390

Chr3_+_16595099 0.22 AT3G45256.1
AT3G45256

Chr1_-_29005281 0.22 AT1G77200.1
AT1G77200
Integrase-type DNA-binding superfamily protein
Chr5_-_23248865 0.22 AT5G57380.2
VIN3
Fibronectin type III domain-containing protein
Chr1_-_8189220 0.22 AT1G23090.4
AT1G23090.1
AT1G23090.3
AT1G23090.2
AST91
sulfate transporter 91
Chr2_-_17648945 0.22 AT2G42380.1
AT2G42380.4
AT2G42380.3
AT2G42380.2
AT2G42380.5
BZIP34
Basic-leucine zipper (bZIP) transcription factor family protein
Chr4_+_17639 0.22 AT4G00050.1
AT4G00050.3
AT4G00050.2
UNE10
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr4_+_14333528 0.22 AT4G29090.1
AT4G29090
Ribonuclease H-like superfamily protein
Chr3_-_2137012 0.22 AT3G06770.1
AT3G06770.5
AT3G06770
Pectin lyase-like superfamily protein
Chr3_+_2717557 0.22 AT3G08940.2
AT3G08940.1
LHCB4.2
light harvesting complex photosystem II
Chr3_-_2137280 0.22 AT3G06770.4
AT3G06770.3
AT3G06770
Pectin lyase-like superfamily protein
Chr4_+_12236593 0.22 AT4G23440.1
AT4G23440.2
AT4G23440
Disease resistance protein (TIR-NBS class)
Chr5_+_6387341 0.22 AT5G19090.1
AT5G19090.4
AT5G19090.3
AT5G19090.2
AT5G19090
Heavy metal transport/detoxification superfamily protein
Chr5_-_23249504 0.22 AT5G57380.1
VIN3
Fibronectin type III domain-containing protein
Chr2_-_19440355 0.21 AT2G47370.2
AT2G47370.1
AT2G47370
Calcium-dependent phosphotriesterase superfamily protein
Chr1_+_3020221 0.21 AT1G09350.2
GolS3
galactinol synthase 3
Chr2_-_9037782 0.21 AT2G21060.1
GRP2B
glycine-rich protein 2B
Chr5_+_4776733 0.21 AT5G14780.1
AT5G14780.3
AT5G14780.2
FDH
formate dehydrogenase
Chr3_-_1855063 0.21 AT3G06130.2
AT3G06130.1
AT3G06130
Heavy metal transport/detoxification superfamily protein
Chr2_+_15549052 0.21 AT2G37025.1
TRFL8
TRF-like 8
Chr4_-_11170071 0.21 AT4G20850.1
TPP2
tripeptidyl peptidase ii
Chr3_-_10655555 0.21 AT3G28420.1
AT3G28420
Putative membrane lipoprotein
Chr1_+_16933699 0.21 AT1G44830.1
AT1G44830
Integrase-type DNA-binding superfamily protein
Chr1_+_27190036 0.21 AT1G72240.1
AT1G72240
hypothetical protein
Chr4_-_11519805 0.21 AT4G21680.1
NRT1.8
NITRATE TRANSPORTER 1.8
Chr5_-_16331276 0.21 AT5G40790.1
AT5G40790
hypothetical protein
Chr1_+_4130396 0.21 AT1G12180.1
AT1G12180
14.7 kDa heat shock-like protein
Chr5_+_7138762 0.21 AT5G21020.2
AT5G21020
transmembrane protein
Chr4_+_16182743 0.20 AT4G33720.1
AT4G33720
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Chr4_-_15016977 0.20 AT4G30830.2
AT4G30830
myosin-like protein (Protein of unknown function, DUF593)
Chr4_+_11345872 0.20 AT4G21326.1
SBT3.12
subtilase 3.12
Chr3_-_538126 0.20 AT3G02550.1
LBD41
LOB domain-containing protein 41
Chr3_+_4810888 0.20 AT3G14395.1
AT3G14395
hypothetical protein
Chr5_-_25823201 0.20 AT5G64590.1
AT5G64590
NYN domain protein
Chr4_+_9254203 0.20 AT4G16380.1
AT4G16380.3
AT4G16380.4
AT4G16380
Heavy metal transport/detoxification superfamily protein
Chr1_-_22512271 0.20 AT1G61100.1
AT1G61100.2
AT1G61100
disease resistance protein (TIR class)
Chr1_-_11297379 0.20 AT1G31550.1
AT1G31550.2
AT1G31550
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr5_+_25433266 0.20 AT5G63530.2
FP3
farnesylated protein 3
Chr3_-_11453497 0.20 AT3G29633.1
AT3G29633.2
AT3G29633
hypothetical protein
Chr5_+_8428078 0.20 AT5G24610.1
AT5G24610
cyclic AMP-responsive element-binding protein
Chr3_-_2264721 0.20 AT3G07150.1
AT3G07150
amino acid-ligase
Chr4_+_17994739 0.19 AT4G38460.1
GGR
geranylgeranyl reductase
Chr4_-_17235580 0.19 AT4G36520.1
AT4G36520
Chaperone DnaJ-domain superfamily protein
Chr1_-_20993569 0.19 AT1G56120.3
AT1G56120.2
AT1G56120
Leucine-rich repeat transmembrane protein kinase
Chr2_-_15599951 0.19 AT2G37130.2
AT2G37130
Peroxidase superfamily protein
Chr4_-_12436712 0.19 AT4G23930.2
AT4G23930.1
AT4G23930
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr2_+_15549837 0.19 AT2G37025.3
TRFL8
TRF-like 8
Chr2_+_17604076 0.19 AT2G42270.1
AT2G42270
U5 small nuclear ribonucleoprotein helicase
Chr3_+_19975339 0.19 AT3G53950.1
AT3G53950
glyoxal oxidase-related protein
Chr2_-_15600154 0.19 AT2G37130.1
AT2G37130
Peroxidase superfamily protein
Chr4_-_13836661 0.19 AT4G27730.1
OPT6
oligopeptide transporter 1
Chr1_+_22198266 0.19 AT1G60190.1
PUB19
ARM repeat superfamily protein
Chr1_-_9043288 0.19 AT1G26150.2
PERK10
proline-rich extensin-like receptor kinase 10
Chr5_-_21688223 0.19 AT5G53440.2
AT5G53440.1
AT5G53440
LOW protein: zinc finger CCCH domain protein
Chr1_-_2899446 0.19 AT1G09010.1
AT1G09010
glycoside hydrolase family 2 protein
Chr5_-_21344106 0.19 AT5G52600.1
MYB82
myb domain protein 82
Chr3_-_21153607 0.19 AT3G57140.2
AT3G57140.1
SDP1-LIKE
sugar-dependent 1-like protein
Chr1_-_28689208 0.19 AT1G76460.1
AT1G76460
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr2_+_9372530 0.19 AT2G22030.1
AT2G22030
Galactose oxidase/kelch repeat superfamily protein
Chr1_+_4260783 0.19 AT1G12490.1
AT1G12490
F-box associated ubiquitination effector family protein
Chr2_-_18391142 0.19 AT2G44550.1
GH9B10
glycosyl hydrolase 9B10
Chr4_-_15896006 0.19 AT4G32920.2
AT4G32920.3
AT4G32920
glycine-rich protein
Chr1_-_30202349 0.19 AT1G80340.1
GA3OX2
gibberellin 3-oxidase 2
Chr4_+_9028262 0.19 AT4G15910.1
DI21
drought-induced 21
Chr4_-_7587099 0.19 AT4G12970.1
STOMAGEN
stomagen
Chr2_-_15066001 0.18 AT2G35880.2
AT2G35880.1
AT2G35880.3
AT2G35880
TPX2 (targeting protein for Xklp2) protein family
Chr2_-_10934604 0.18 AT2G25680.1
MOT1
molybdate transporter 1
Chr5_+_324428 0.18 AT5G01840.1
OFP1
ovate family protein 1
Chr3_+_10243559 0.18 AT3G27660.2
OLEO4
oleosin 4
Chr1_+_12219657 0.18 AT1G33710.1
AT1G33710
RNA-directed DNA polymerase (reverse transcriptase)-related family protein
Chr5_+_25432890 0.18 AT5G63530.1
FP3
farnesylated protein 3
Chr4_+_9254555 0.18 AT4G16380.2
AT4G16380
Heavy metal transport/detoxification superfamily protein
Chr3_+_1983731 0.18 AT3G06470.1
AT3G06470
GNS1/SUR4 membrane protein family
Chr2_+_15549210 0.18 AT2G37025.2
TRFL8
TRF-like 8
Chr3_+_18522466 0.18 AT3G49950.1
AT3G49950
GRAS family transcription factor
Chr4_-_11846476 0.18 AT4G22485.1
AT4G22485
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr4_-_9896688 0.18 AT4G17800.1
AT4G17800
Putative AT-hook DNA-binding family protein
Chr5_+_22179931 0.18 AT5G54590.4
AT5G54590.3
CRLK1
Protein kinase superfamily protein
Chr4_-_15896345 0.18 AT4G32920.1
AT4G32920
glycine-rich protein
Chr3_+_21680027 0.18 AT3G58620.1
AT3G58620.2
TTL4
tetratricopetide-repeat thioredoxin-like 4
Chr4_-_18334893 0.18 AT4G39410.1
WRKY13
WRKY DNA-binding protein 13
Chr1_+_12908848 0.18 AT1G35220.2
AT1G35220.3
AT1G35220.1
AT1G35220.4
AT1G35220
FAM91 carboxy-terminus protein
Chr1_-_12126469 0.18 AT1G33430.1
AT1G33430.2
AT1G33430
Galactosyltransferase family protein
Chr1_+_18606511 0.18 AT1G50240.2
AT1G50240.3
FU
kinase family with ARM repeat domain-containing protein
Chr2_-_15474717 0.18 AT2G36870.2
AT2G36870.1
XTH32
xyloglucan endotransglucosylase/hydrolase 32
Chr4_-_16806830 0.18 AT4G35320.1
AT4G35320
hypothetical protein
Chr3_-_2137641 0.17 AT3G06770.2
AT3G06770
Pectin lyase-like superfamily protein
Chr1_+_9400326 0.17 AT1G27080.1
NRT1.6
nitrate transporter 1.6
Chr2_-_591689 0.17 AT2G02230.1
PP2-B1
phloem protein 2-B1
Chr5_+_22179700 0.17 AT5G54590.2
AT5G54590.1
CRLK1
Protein kinase superfamily protein
Chr4_+_15676240 0.17 AT4G32480.1
AT4G32480
sugar phosphate exchanger, putative (DUF506)
Chr5_-_21357219 0.17 AT5G52650.1
AT5G52650
RNA binding Plectin/S10 domain-containing protein
Chr2_-_10702203 0.17 AT2G25140.1
CLPB4
casein lytic proteinase B4
Chr1_-_6904155 0.17 AT1G19880.1
AT1G19880
Regulator of chromosome condensation (RCC1) family protein
Chr4_+_18302775 0.17 AT4G39360.1
AT4G39360
hypothetical protein
Chr4_-_1066571 0.17 AT4G02420.1
AT4G02420
Concanavalin A-like lectin protein kinase family protein
Chr1_+_3328971 0.17 AT1G10160.1
AT1G10160

Chr2_-_4237199 0.17 AT2G10770.1
AT2G10770

Chr2_+_1682856 0.17 AT2G04795.1
AT2G04795
hypothetical protein
Chr5_-_22586347 0.17 AT5G55810.3
AT5G55810.2
AT5G55810.1
NMNAT
nicotinate/nicotinamide mononucleotide adenyltransferase
Chr1_-_28682062 0.17 AT1G76430.1
PHT1%3B9
phosphate transporter 1;9
Chr4_-_15017365 0.17 AT4G30830.1
AT4G30830
myosin-like protein (Protein of unknown function, DUF593)
Chr2_-_14955605 0.17 AT2G35612.1
AT2G35612
copper amine oxidase family protein
Chr3_-_9457554 0.17 AT3G25840.1
AT3G25840.2
AT3G25840
Protein kinase superfamily protein
Chr4_-_9355326 0.17 AT4G16610.1
AT4G16610
C2H2-like zinc finger protein
Chr5_+_19309227 0.17 AT5G47640.1
NF-YB2
nuclear factor Y, subunit B2
Chr2_+_879247 0.17 AT2G03010.1
AT2G03010
hypothetical protein (DUF577)
Chr4_-_1490228 0.17 AT4G03380.1
AT4G03380
hypothetical protein
Chr2_+_11566288 0.17 AT2G27080.1
AT2G27080
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr4_-_14986876 0.17 AT4G30770.1
AT4G30770
Putative membrane lipoprotein
Chr1_+_12909426 0.17 AT1G35220.5
AT1G35220.6
AT1G35220
FAM91 carboxy-terminus protein
Chr5_+_6387735 0.17 AT5G19090.5
AT5G19090
Heavy metal transport/detoxification superfamily protein
Chr1_-_130570 0.17 AT1G01320.1
AT1G01320.3
AT1G01320.2
AT1G01320
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_-_8556555 0.17 AT1G24160.2
AT1G24160
triadin
Chr4_-_1203380 0.17 AT4G02715.1
AT4G02715.2
AT4G02715
flocculation FLO11-like protein
Chr5_-_11721564 0.17 AT5G31804.1
AT5G31804

Chr1_-_8556750 0.17 AT1G24160.1
AT1G24160
triadin
Chr5_+_5718498 0.17 AT5G17350.1
AT5G17350
hypothetical protein
Chr1_-_20993072 0.16 AT1G56120.1
AT1G56120
Leucine-rich repeat transmembrane protein kinase
Chr1_-_25296937 0.16 AT1G67500.1
AT1G67500.2
AT1G67500.6
AT1G67500.5
AT1G67500.4
AT1G67500.7
AT1G67500.3
REV3
recovery protein 3
Chr3_-_9255083 0.16 AT3G25500.1
AFH1
formin homology 1
Chr5_-_14816520 0.16 AT5G37370.2
AT5G37370.11
AT5G37370.9
AT5G37370.12
AT5G37370.3
AT5G37370.10
AT5G37370.8
AT5G37370.1
AT5G37370.5
AT5G37370.4
ATSRL1
PRP38 family protein
Chr1_+_13026206 0.16 AT1G35420.1
AT1G35420.2
AT1G35420.3
AT1G35420
alpha/beta-Hydrolases superfamily protein
Chr5_-_19635664 0.16 AT5G48450.1
AT5G48450.2
sks3
SKU5 similar 3
Chr5_-_3595003 0.16 AT5G11260.2
AT5G11260.1
HY5
Basic-leucine zipper (bZIP) transcription factor family protein
Chr4_-_9511760 0.16 AT4G16910.1
AT4G16910

Chr4_-_13998604 0.16 AT4G28240.1
AT4G28240
Wound-responsive family protein
Chr4_-_18459257 0.16 AT4G39780.1
AT4G39780
Integrase-type DNA-binding superfamily protein
Chr1_+_6805430 0.16 AT1G19680.1
AT1G19680
RING/U-box superfamily protein
Chr3_+_10243244 0.16 AT3G27660.1
OLEO4
oleosin 4
Chr1_-_8429241 0.16 AT1G23860.2
AT1G23860.3
AT1G23860.1
AT1G23860.4
RSZ21
RS-containing zinc finger protein 21
Chr2_+_385171 0.16 AT2G01850.1
EXGT-A3
endoxyloglucan transferase A3

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G08330

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0009871 jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway(GO:0009871)
0.1 0.5 GO:1904589 regulation of protein import(GO:1904589)
0.1 0.3 GO:1902464 histone H3-K27 trimethylation(GO:0098532) regulation of histone H3-K27 trimethylation(GO:1902464)
0.1 0.3 GO:0048281 inflorescence morphogenesis(GO:0048281)
0.1 0.6 GO:0070920 regulation of production of small RNA involved in gene silencing by RNA(GO:0070920)
0.1 0.1 GO:0055071 manganese ion homeostasis(GO:0055071)
0.1 0.4 GO:0010226 response to lithium ion(GO:0010226)
0.1 0.7 GO:0090506 axillary shoot meristem initiation(GO:0090506)
0.1 0.4 GO:0051571 positive regulation of histone H3-K4 methylation(GO:0051571)
0.1 0.1 GO:0010080 regulation of floral meristem growth(GO:0010080)
0.1 0.4 GO:0048533 sporocyte differentiation(GO:0048533)
0.1 0.3 GO:0043692 monoterpene metabolic process(GO:0043692)
0.1 0.2 GO:0055047 generative cell mitosis(GO:0055047)
0.1 0.4 GO:0010148 transpiration(GO:0010148)
0.0 0.2 GO:0010116 positive regulation of abscisic acid biosynthetic process(GO:0010116)
0.0 0.3 GO:0010344 seed oilbody biogenesis(GO:0010344)
0.0 0.2 GO:0045046 protein import into peroxisome membrane(GO:0045046)
0.0 0.2 GO:0001682 tRNA 5'-leader removal(GO:0001682)
0.0 0.1 GO:1902932 positive regulation of alcohol biosynthetic process(GO:1902932)
0.0 0.2 GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218)
0.0 0.1 GO:0071763 nuclear membrane organization(GO:0071763)
0.0 0.2 GO:0071494 cellular response to UV-C(GO:0071494)
0.0 0.1 GO:0008334 histone mRNA metabolic process(GO:0008334)
0.0 0.1 GO:0035445 borate transmembrane transport(GO:0035445)
0.0 0.1 GO:1901537 positive regulation of DNA demethylation(GO:1901537)
0.0 0.2 GO:0043617 cellular response to sucrose starvation(GO:0043617)
0.0 0.3 GO:0090356 negative regulation of auxin metabolic process(GO:0090356)
0.0 0.1 GO:0090213 regulation of radial pattern formation(GO:0090213)
0.0 0.2 GO:0009558 embryo sac cellularization(GO:0009558)
0.0 0.1 GO:0009945 radial axis specification(GO:0009945)
0.0 0.1 GO:0035436 triose phosphate transport(GO:0015717) triose phosphate transmembrane transport(GO:0035436)
0.0 0.2 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.0 0.1 GO:0019343 cysteine biosynthetic process via cystathionine(GO:0019343)
0.0 0.2 GO:0080119 ER body organization(GO:0080119)
0.0 0.7 GO:0051017 actin filament bundle assembly(GO:0051017) actin filament bundle organization(GO:0061572)
0.0 0.1 GO:0000455 enzyme-directed rRNA pseudouridine synthesis(GO:0000455)
0.0 0.5 GO:0045995 regulation of embryonic development(GO:0045995)
0.0 0.1 GO:0010289 homogalacturonan biosynthetic process(GO:0010289)
0.0 0.2 GO:0042350 GDP-L-fucose biosynthetic process(GO:0042350) GDP-L-fucose metabolic process(GO:0046368)
0.0 0.1 GO:0006747 FAD biosynthetic process(GO:0006747) flavin adenine dinucleotide biosynthetic process(GO:0072388)
0.0 0.1 GO:0010482 epidermal cell division(GO:0010481) regulation of epidermal cell division(GO:0010482)
0.0 0.1 GO:0010434 nectary development(GO:0010254) bract morphogenesis(GO:0010433) bract formation(GO:0010434)
0.0 0.1 GO:0043247 telomere maintenance in response to DNA damage(GO:0043247)
0.0 0.2 GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning(GO:0060774)
0.0 0.2 GO:0015689 molybdate ion transport(GO:0015689)
0.0 0.1 GO:0080140 regulation of jasmonic acid metabolic process(GO:0080140) regulation of jasmonic acid biosynthetic process(GO:0080141)
0.0 0.4 GO:0001709 cell fate determination(GO:0001709)
0.0 0.4 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.0 0.1 GO:0044380 protein localization to cytoskeleton(GO:0044380) protein localization to microtubule cytoskeleton(GO:0072698)
0.0 0.1 GO:0006658 phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659)
0.0 0.1 GO:0030031 cell projection organization(GO:0030030) cell projection assembly(GO:0030031)
0.0 0.1 GO:0031573 intra-S DNA damage checkpoint(GO:0031573)
0.0 0.2 GO:0031539 positive regulation of anthocyanin metabolic process(GO:0031539)
0.0 0.4 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.0 0.1 GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045737) positive regulation of cyclin-dependent protein kinase activity(GO:1904031)
0.0 0.2 GO:0042138 meiotic DNA double-strand break formation(GO:0042138)
0.0 0.2 GO:0048654 anther morphogenesis(GO:0048654) anther wall tapetum morphogenesis(GO:0048655)
0.0 0.3 GO:0009704 de-etiolation(GO:0009704)
0.0 0.1 GO:0006428 isoleucyl-tRNA aminoacylation(GO:0006428)
0.0 0.1 GO:0033120 positive regulation of RNA splicing(GO:0033120) positive regulation of mRNA processing(GO:0050685)
0.0 0.2 GO:0048587 regulation of short-day photoperiodism, flowering(GO:0048587)
0.0 0.3 GO:0048496 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.0 0.3 GO:0009641 shade avoidance(GO:0009641)
0.0 0.2 GO:0009435 NAD biosynthetic process(GO:0009435)
0.0 0.2 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.1 GO:0009660 endosome organization(GO:0007032) amyloplast organization(GO:0009660)
0.0 0.2 GO:0010047 fruit dehiscence(GO:0010047)
0.0 0.1 GO:0009554 megasporogenesis(GO:0009554)
0.0 0.3 GO:1900056 negative regulation of leaf senescence(GO:1900056)
0.0 0.1 GO:1902289 negative regulation of defense response to oomycetes(GO:1902289)
0.0 0.1 GO:1904961 quiescent center organization(GO:1904961)
0.0 0.2 GO:0060359 response to ammonium ion(GO:0060359) nitrate import(GO:1902025)
0.0 0.1 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.0 0.2 GO:0033619 membrane protein proteolysis(GO:0033619)
0.0 0.0 GO:0051447 negative regulation of meiotic nuclear division(GO:0045835) negative regulation of meiotic cell cycle(GO:0051447)
0.0 0.2 GO:0045597 positive regulation of cell differentiation(GO:0045597)
0.0 0.2 GO:0051865 protein autoubiquitination(GO:0051865)
0.0 0.1 GO:0051452 vacuolar acidification(GO:0007035) intracellular pH reduction(GO:0051452)
0.0 0.1 GO:0006086 acetyl-CoA biosynthetic process from pyruvate(GO:0006086)
0.0 0.1 GO:0042754 negative regulation of circadian rhythm(GO:0042754)
0.0 0.4 GO:0000162 tryptophan biosynthetic process(GO:0000162) indolalkylamine biosynthetic process(GO:0046219)
0.0 0.2 GO:0006857 oligopeptide transport(GO:0006857) peptide transport(GO:0015833)
0.0 0.1 GO:0010199 organ boundary specification between lateral organs and the meristem(GO:0010199)
0.0 0.1 GO:0097036 regulation of plasma membrane sterol distribution(GO:0097036)
0.0 0.1 GO:0006450 regulation of translational fidelity(GO:0006450)
0.0 0.1 GO:1903963 icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) icosanoid transport(GO:0071715) fatty acid derivative transport(GO:1901571) arachidonate transport(GO:1903963)
0.0 0.2 GO:0010052 guard cell differentiation(GO:0010052)
0.0 0.1 GO:0006361 transcription initiation from RNA polymerase I promoter(GO:0006361)
0.0 0.2 GO:0009913 epidermis development(GO:0008544) epidermal cell differentiation(GO:0009913) epithelial cell differentiation(GO:0030855)
0.0 0.4 GO:0006012 galactose metabolic process(GO:0006012)
0.0 0.1 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.0 0.0 GO:0042766 nucleosome mobilization(GO:0042766)
0.0 0.1 GO:0060866 leaf abscission(GO:0060866)
0.0 0.2 GO:0046519 sphingoid metabolic process(GO:0046519)
0.0 0.1 GO:0044030 regulation of DNA methylation(GO:0044030)
0.0 0.3 GO:0046688 response to copper ion(GO:0046688)
0.0 0.1 GO:0042149 cellular response to glucose starvation(GO:0042149)
0.0 0.1 GO:0044211 CTP salvage(GO:0044211)
0.0 0.0 GO:0010071 root meristem specification(GO:0010071)
0.0 0.2 GO:0009861 jasmonic acid and ethylene-dependent systemic resistance(GO:0009861)
0.0 0.2 GO:0018126 protein hydroxylation(GO:0018126) peptidyl-proline hydroxylation to 4-hydroxy-L-proline(GO:0018401) 4-hydroxyproline metabolic process(GO:0019471) peptidyl-proline hydroxylation(GO:0019511)
0.0 0.1 GO:0006654 phosphatidic acid biosynthetic process(GO:0006654)
0.0 0.5 GO:0009958 positive gravitropism(GO:0009958)
0.0 0.3 GO:0010020 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.0 0.5 GO:0046916 cellular transition metal ion homeostasis(GO:0046916)
0.0 0.1 GO:0043266 regulation of potassium ion transport(GO:0043266)
0.0 0.2 GO:0070298 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.0 0.1 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.0 0.1 GO:0033206 meiotic cytokinesis(GO:0033206)
0.0 0.3 GO:0019915 lipid storage(GO:0019915)
0.0 0.1 GO:0070919 production of siRNA involved in chromatin silencing by small RNA(GO:0070919)
0.0 0.2 GO:0019432 triglyceride biosynthetic process(GO:0019432)
0.0 0.0 GO:1900369 negative regulation of gene silencing by RNA(GO:0060967) negative regulation of RNA interference(GO:1900369)
0.0 0.7 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.0 0.2 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.0 0.2 GO:0006826 iron ion transport(GO:0006826)
0.0 0.1 GO:0010588 cotyledon vascular tissue pattern formation(GO:0010588)
0.0 0.5 GO:0071805 cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805)
0.0 0.1 GO:0006556 S-adenosylmethionine biosynthetic process(GO:0006556)
0.0 0.1 GO:0010103 stomatal complex morphogenesis(GO:0010103)
0.0 0.1 GO:0016121 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0005884 actin filament(GO:0005884)
0.0 0.4 GO:0005677 chromatin silencing complex(GO:0005677)
0.0 0.2 GO:0030870 Mre11 complex(GO:0030870)
0.0 0.2 GO:0005947 mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062)
0.0 0.2 GO:0000836 ER ubiquitin ligase complex(GO:0000835) Hrd1p ubiquitin ligase complex(GO:0000836) Hrd1p ubiquitin ligase ERAD-L complex(GO:0000839)
0.0 0.1 GO:0009501 amyloplast(GO:0009501)
0.0 0.3 GO:0070390 transcription export complex 2(GO:0070390)
0.0 0.5 GO:0005801 cis-Golgi network(GO:0005801)
0.0 0.1 GO:0030896 checkpoint clamp complex(GO:0030896)
0.0 0.3 GO:0070971 endoplasmic reticulum exit site(GO:0070971)
0.0 0.1 GO:0048476 Holliday junction resolvase complex(GO:0048476)
0.0 0.1 GO:0046695 SLIK (SAGA-like) complex(GO:0046695)
0.0 0.1 GO:1990752 microtubule end(GO:1990752)
0.0 0.1 GO:0031932 TORC2 complex(GO:0031932)
0.0 0.2 GO:0005765 lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852)
0.0 0.4 GO:0071011 precatalytic spliceosome(GO:0071011)
0.0 0.1 GO:0000811 GINS complex(GO:0000811)
0.0 0.4 GO:0090404 growing cell tip(GO:0035838) cell tip(GO:0051286) pollen tube tip(GO:0090404)
0.0 0.1 GO:0000808 origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664)
0.0 1.1 GO:0009707 chloroplast outer membrane(GO:0009707)
0.0 0.1 GO:0031379 RNA-directed RNA polymerase complex(GO:0031379) nuclear RNA-directed RNA polymerase complex(GO:0031380)
0.0 0.1 GO:0000312 plastid small ribosomal subunit(GO:0000312)
0.0 0.3 GO:0012511 monolayer-surrounded lipid storage body(GO:0012511)
0.0 0.1 GO:0010369 chromocenter(GO:0010369)
0.0 0.2 GO:0030125 clathrin vesicle coat(GO:0030125)
0.0 0.1 GO:0051233 spindle midzone(GO:0051233)
0.0 0.1 GO:0032541 cortical endoplasmic reticulum(GO:0032541)
0.0 0.2 GO:0042575 DNA polymerase complex(GO:0042575)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0031219 levanase activity(GO:0031219) fructan beta-fructosidase activity(GO:0051669)
0.1 0.2 GO:0045485 omega-6 fatty acid desaturase activity(GO:0045485)
0.1 0.2 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.1 0.2 GO:0000309 nicotinamide-nucleotide adenylyltransferase activity(GO:0000309)
0.0 0.1 GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity(GO:0050567)
0.0 0.4 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.0 0.3 GO:0004652 polynucleotide adenylyltransferase activity(GO:0004652)
0.0 0.2 GO:0003863 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity(GO:0003863)
0.0 0.7 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 0.1 GO:0071614 linoleic acid epoxygenase activity(GO:0071614)
0.0 0.1 GO:0004106 chorismate mutase activity(GO:0004106)
0.0 0.1 GO:0000170 sphingosine hydroxylase activity(GO:0000170)
0.0 0.1 GO:0008883 glutamyl-tRNA reductase activity(GO:0008883)
0.0 0.2 GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227)
0.0 0.2 GO:1990381 ubiquitin-specific protease binding(GO:1990381)
0.0 0.2 GO:0070330 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
0.0 0.2 GO:0015116 sulfate transmembrane transporter activity(GO:0015116)
0.0 0.1 GO:0004640 phosphoribosylanthranilate isomerase activity(GO:0004640)
0.0 0.1 GO:0046027 phospholipid:diacylglycerol acyltransferase activity(GO:0046027)
0.0 0.1 GO:0008311 phosphodiesterase I activity(GO:0004528) double-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008311)
0.0 0.2 GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0003830)
0.0 0.2 GO:0004567 beta-mannosidase activity(GO:0004567)
0.0 0.1 GO:0047912 galacturonokinase activity(GO:0047912)
0.0 0.1 GO:0004108 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)
0.0 0.1 GO:0005223 intracellular cGMP activated cation channel activity(GO:0005223)
0.0 0.1 GO:0042800 histone methyltransferase activity (H3-K4 specific)(GO:0042800)
0.0 0.2 GO:0004526 ribonuclease P activity(GO:0004526)
0.0 0.1 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
0.0 0.7 GO:0008810 cellulase activity(GO:0008810)
0.0 0.1 GO:0046715 borate transmembrane transporter activity(GO:0046715) borate efflux transmembrane transporter activity(GO:0080139)
0.0 0.1 GO:0017050 D-erythro-sphingosine kinase activity(GO:0017050)
0.0 0.4 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.0 0.1 GO:0035197 siRNA binding(GO:0035197)
0.0 0.1 GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity(GO:0061575)
0.0 0.1 GO:0003919 FMN adenylyltransferase activity(GO:0003919)
0.0 0.2 GO:1904680 oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680)
0.0 0.1 GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity(GO:0004739)
0.0 0.7 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.0 0.1 GO:0004822 isoleucine-tRNA ligase activity(GO:0004822)
0.0 0.1 GO:0004123 cystathionine gamma-lyase activity(GO:0004123)
0.0 0.1 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
0.0 0.2 GO:0004806 triglyceride lipase activity(GO:0004806)
0.0 0.2 GO:0042500 aspartic endopeptidase activity, intramembrane cleaving(GO:0042500)
0.0 0.1 GO:0047498 calcium-dependent phospholipase A2 activity(GO:0047498)
0.0 0.1 GO:0003968 RNA-directed RNA polymerase activity(GO:0003968)
0.0 0.2 GO:0070568 guanylyltransferase activity(GO:0070568)
0.0 0.1 GO:0004450 isocitrate dehydrogenase (NADP+) activity(GO:0004450)
0.0 0.1 GO:0009922 fatty acid elongase activity(GO:0009922)
0.0 0.1 GO:0019904 protein domain specific binding(GO:0019904)
0.0 0.4 GO:0004568 chitinase activity(GO:0004568)
0.0 0.1 GO:0048365 Rac GTPase binding(GO:0048365)
0.0 0.1 GO:0016312 inositol bisphosphate phosphatase activity(GO:0016312)
0.0 0.1 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
0.0 0.6 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.0 0.1 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 0.1 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.0 0.2 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.0 0.0 GO:1990404 protein ADP-ribosylase activity(GO:1990404)
0.0 0.1 GO:0004679 AMP-activated protein kinase activity(GO:0004679)
0.0 0.1 GO:0004849 uridine kinase activity(GO:0004849)
0.0 0.1 GO:0047134 protein-disulfide reductase activity(GO:0047134)
0.0 0.2 GO:0004656 procollagen-proline 4-dioxygenase activity(GO:0004656) procollagen-proline dioxygenase activity(GO:0019798) peptidyl-proline 4-dioxygenase activity(GO:0031545)
0.0 0.2 GO:0004311 farnesyltranstransferase activity(GO:0004311)
0.0 0.1 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
0.0 0.1 GO:0009678 hydrogen-translocating pyrophosphatase activity(GO:0009678)
0.0 0.7 GO:0004650 polygalacturonase activity(GO:0004650)
0.0 0.1 GO:0005366 myo-inositol:proton symporter activity(GO:0005366)
0.0 0.1 GO:0051747 cytosine C-5 DNA demethylase activity(GO:0051747)
0.0 0.1 GO:0004435 phosphatidylinositol phospholipase C activity(GO:0004435)
0.0 0.4 GO:0015035 protein disulfide oxidoreductase activity(GO:0015035)
0.0 0.1 GO:0004478 methionine adenosyltransferase activity(GO:0004478)
0.0 0.1 GO:0010340 carboxyl-O-methyltransferase activity(GO:0010340)
0.0 0.4 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.0 0.1 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.0 0.1 GO:0016161 beta-amylase activity(GO:0016161)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 PID TCPTP PATHWAY Signaling events mediated by TCPTP
0.0 0.0 PID RAC1 PATHWAY RAC1 signaling pathway
0.0 0.0 SA CASPASE CASCADE Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade.
0.0 0.1 SA G1 AND S PHASES Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition.
0.0 0.1 PID SHP2 PATHWAY SHP2 signaling

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES Genes involved in Recruitment of mitotic centrosome proteins and complexes
0.0 0.1 REACTOME G2 M DNA DAMAGE CHECKPOINT Genes involved in G2/M DNA damage checkpoint
0.0 0.1 REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION Genes involved in E2F-enabled inhibition of pre-replication complex formation
0.0 0.1 REACTOME DOWNSTREAM SIGNALING OF ACTIVATED FGFR Genes involved in Downstream signaling of activated FGFR
0.0 0.0 REACTOME SIGNALING BY TGF BETA RECEPTOR COMPLEX Genes involved in Signaling by TGF-beta Receptor Complex
0.0 0.0 REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE Genes involved in mRNA Decay by 5' to 3' Exoribonuclease