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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G08330
Z-value: 0.82
Transcription factors associated with AT5G08330
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G08330
|
AT5G08330 | TCP family transcription factor |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TCP11 | arTal_v1_Chr5_+_2680401_2680401 | 0.30 | 3.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_7406994_7406994 Show fit | 0.59 |
AT4G12480.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_-_25176230_25176230 Show fit | 0.51 |
AT1G67265.1
|
ROTUNDIFOLIA like 21 |
|
| arTal_v1_Chr1_+_23953099_23953099 Show fit | 0.50 |
AT1G64500.1
|
Glutaredoxin family protein |
|
| arTal_v1_Chr2_-_8971339_8971339 Show fit | 0.50 |
AT2G20835.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_3963984_3963984 Show fit | 0.45 |
AT3G12500.1
|
basic chitinase |
|
| arTal_v1_Chr4_-_7401951_7401951 Show fit | 0.44 |
AT4G12470.1
|
azelaic acid induced 1 |
|
| arTal_v1_Chr4_+_2505979_2505979 Show fit | 0.43 |
AT4G04925.1
|
transmembrane protein |
|
| arTal_v1_Chr5_-_1994824_1994961 Show fit | 0.41 |
AT5G06530.2
AT5G06530.3 AT5G06530.4 AT5G06530.1 |
ABC-2 type transporter family protein |
|
| arTal_v1_Chr2_-_14778933_14779106 Show fit | 0.40 |
AT2G35060.4
AT2G35060.2 AT2G35060.3 AT2G35060.1 |
K+ uptake permease 11 |
|
| arTal_v1_Chr5_+_8589457_8589457 Show fit | 0.39 |
AT5G24930.1
|
zinc finger CONSTANS-like protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G08330
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | GO:0090506 | axillary shoot meristem initiation(GO:0090506) |
| 0.0 | 0.7 | GO:0051017 | actin filament bundle assembly(GO:0051017) actin filament bundle organization(GO:0061572) |
| 0.0 | 0.7 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 0.6 | GO:0070920 | regulation of production of small RNA involved in gene silencing by RNA(GO:0070920) |
| 0.1 | 0.5 | GO:1904589 | regulation of protein import(GO:1904589) |
| 0.0 | 0.5 | GO:0045995 | regulation of embryonic development(GO:0045995) |
| 0.0 | 0.5 | GO:0009958 | positive gravitropism(GO:0009958) |
| 0.0 | 0.5 | GO:0046916 | cellular transition metal ion homeostasis(GO:0046916) |
| 0.0 | 0.5 | GO:0071805 | cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805) |
| 0.1 | 0.4 | GO:0009871 | jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway(GO:0009871) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.1 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.1 | 0.5 | GO:0005884 | actin filament(GO:0005884) |
| 0.0 | 0.5 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.0 | 0.4 | GO:0005677 | chromatin silencing complex(GO:0005677) |
| 0.0 | 0.4 | GO:0071011 | precatalytic spliceosome(GO:0071011) |
| 0.0 | 0.4 | GO:0090404 | growing cell tip(GO:0035838) cell tip(GO:0051286) pollen tube tip(GO:0090404) |
| 0.0 | 0.3 | GO:0070390 | transcription export complex 2(GO:0070390) |
| 0.0 | 0.3 | GO:0070971 | endoplasmic reticulum exit site(GO:0070971) |
| 0.0 | 0.3 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 0.2 | GO:0030870 | Mre11 complex(GO:0030870) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.7 | GO:0016308 | 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308) |
| 0.0 | 0.7 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.0 | 0.7 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 0.7 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 0.6 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.0 | 0.4 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 0.0 | 0.4 | GO:0003825 | alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825) |
| 0.0 | 0.4 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.0 | 0.4 | GO:0015035 | protein disulfide oxidoreductase activity(GO:0015035) |
| 0.0 | 0.4 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.0 | 0.1 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
| 0.0 | 0.1 | PID SHP2 PATHWAY | SHP2 signaling |
| 0.0 | 0.0 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.0 | 0.0 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.0 | 0.1 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.0 | 0.1 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
| 0.0 | 0.1 | REACTOME DOWNSTREAM SIGNALING OF ACTIVATED FGFR | Genes involved in Downstream signaling of activated FGFR |
| 0.0 | 0.0 | REACTOME SIGNALING BY TGF BETA RECEPTOR COMPLEX | Genes involved in Signaling by TGF-beta Receptor Complex |
| 0.0 | 0.0 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |