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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G08130
Z-value: 0.57
Transcription factors associated with AT5G08130
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G08130
|
AT5G08130 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| BIM1 | arTal_v1_Chr5_-_2610123_2610250 | -0.44 | 1.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_1244947_1244947 Show fit | 0.81 |
AT1G04560.1
|
AWPM-19-like family protein |
|
| arTal_v1_Chr1_+_18542061_18542061 Show fit | 0.63 |
AT1G50040.1
|
formin-like protein, putative (DUF1005) |
|
| arTal_v1_Chr1_-_6782216_6782216 Show fit | 0.62 |
AT1G19610.1
|
defensin-like protein |
|
| arTal_v1_Chr4_+_10838310_10838310 Show fit | 0.58 |
AT4G20000.1
|
VQ motif-containing protein |
|
| arTal_v1_Chr4_+_160643_160643 Show fit | 0.51 |
AT4G00360.1
|
cytochrome P450, family 86, subfamily A, polypeptide 2 |
|
| arTal_v1_Chr5_+_9683988_9683988 Show fit | 0.50 |
AT5G27420.1
|
carbon/nitrogen insensitive 1 |
|
| arTal_v1_Chr4_+_15230008_15230008 Show fit | 0.49 |
AT4G31380.1
|
flowering-promoting factor-like protein |
|
| arTal_v1_Chr2_+_9488413_9488542 Show fit | 0.48 |
AT2G22330.2
AT2G22330.1 |
cytochrome P450, family 79, subfamily B, polypeptide 3 |
|
| arTal_v1_Chr2_+_8097420_8097420 Show fit | 0.47 |
AT2G18690.2
AT2G18690.1 |
transmembrane protein |
|
| arTal_v1_Chr2_+_3618058_3618058 Show fit | 0.44 |
AT2G08986.1
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G08130
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.3 | GO:0006569 | tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218) |
| 0.1 | 0.6 | GO:0010344 | seed oilbody biogenesis(GO:0010344) |
| 0.0 | 0.6 | GO:0010187 | negative regulation of seed germination(GO:0010187) |
| 0.0 | 0.3 | GO:0010371 | regulation of gibberellin biosynthetic process(GO:0010371) |
| 0.0 | 0.3 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.0 | 0.2 | GO:0006481 | C-terminal protein methylation(GO:0006481) |
| 0.0 | 0.2 | GO:0046247 | carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247) |
| 0.0 | 0.2 | GO:0051131 | chaperone-mediated protein complex assembly(GO:0051131) |
| 0.0 | 0.2 | GO:0006298 | mismatch repair(GO:0006298) |
| 0.0 | 0.2 | GO:0010105 | negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.8 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 0.4 | GO:0030139 | endocytic vesicle(GO:0030139) |
| 0.0 | 0.2 | GO:0044545 | NSL complex(GO:0044545) |
| 0.0 | 0.2 | GO:0042406 | extrinsic component of endoplasmic reticulum membrane(GO:0042406) |
| 0.0 | 0.2 | GO:0032300 | mismatch repair complex(GO:0032300) |
| 0.0 | 0.1 | GO:0034274 | Atg12-Atg5-Atg16 complex(GO:0034274) |
| 0.0 | 0.1 | GO:1990298 | bub1-bub3 complex(GO:1990298) |
| 0.0 | 0.1 | GO:0031414 | N-terminal protein acetyltransferase complex(GO:0031414) NatC complex(GO:0031417) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | GO:0070330 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330) |
| 0.0 | 0.3 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.1 | 0.2 | GO:0003838 | sterol 24-C-methyltransferase activity(GO:0003838) |
| 0.0 | 0.2 | GO:0003880 | protein C-terminal carboxyl O-methyltransferase activity(GO:0003880) protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity(GO:0004671) |
| 0.0 | 0.2 | GO:0045544 | gibberellin 20-oxidase activity(GO:0045544) |
| 0.0 | 0.2 | GO:0002151 | G-quadruplex RNA binding(GO:0002151) |
| 0.0 | 0.2 | GO:0045549 | 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549) |
| 0.0 | 0.2 | GO:0004362 | glutathione-disulfide reductase activity(GO:0004362) |
| 0.0 | 0.2 | GO:0030983 | mismatched DNA binding(GO:0030983) |
| 0.0 | 0.1 | GO:0004048 | anthranilate phosphoribosyltransferase activity(GO:0004048) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.0 | 0.2 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
| 0.0 | 0.0 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |