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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G07310
Z-value: 1.23
Transcription factors associated with AT5G07310
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G07310
|
AT5G07310 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G07310 | arTal_v1_Chr5_+_2305551_2305551 | -0.51 | 6.1e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_10164452_10164452 Show fit | 2.75 |
AT1G29090.1
|
Cysteine proteinases superfamily protein |
|
| arTal_v1_Chr4_-_13016235_13016235 Show fit | 2.46 |
AT4G25470.1
|
C-repeat/DRE binding factor 2 |
|
| arTal_v1_Chr3_-_20576249_20576249 Show fit | 2.43 |
AT3G55500.1
|
expansin A16 |
|
| arTal_v1_Chr5_-_8406132_8406151 Show fit | 2.26 |
AT5G24570.1
AT5G24575.1 |
hypothetical protein hypothetical protein |
|
| arTal_v1_Chr4_+_10703348_10703348 Show fit | 1.97 |
AT4G19680.1
AT4G19680.2 |
iron regulated transporter 2 |
|
| arTal_v1_Chr5_-_3728726_3728726 Show fit | 1.95 |
AT5G11590.1
|
Integrase-type DNA-binding superfamily protein |
|
| arTal_v1_Chr4_-_13022996_13022996 Show fit | 1.80 |
AT4G25490.1
|
C-repeat/DRE binding factor 1 |
|
| arTal_v1_Chr4_-_1046993_1047105 Show fit | 1.79 |
AT4G02380.2
AT4G02380.1 AT4G02380.3 |
senescence-associated gene 21 |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 1.65 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr5_-_19977620_19977620 Show fit | 1.65 |
AT5G49280.1
|
hydroxyproline-rich glycoprotein family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G07310
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 9.6 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.1 | 5.8 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.1 | 3.8 | GO:0010345 | suberin biosynthetic process(GO:0010345) |
| 0.1 | 3.4 | GO:0048825 | cotyledon development(GO:0048825) |
| 0.0 | 2.9 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 2.8 | GO:0042752 | regulation of circadian rhythm(GO:0042752) |
| 0.1 | 2.2 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.0 | 2.2 | GO:0009744 | response to sucrose(GO:0009744) |
| 0.1 | 2.1 | GO:0006826 | iron ion transport(GO:0006826) |
| 0.5 | 2.0 | GO:0033353 | S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.8 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 6.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 3.2 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 3.2 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 3.1 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 3.0 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 2.3 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 1.9 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.0 | 1.6 | GO:0042995 | cell projection(GO:0042995) |
| 0.0 | 1.6 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.3 | GO:0004721 | phosphoprotein phosphatase activity(GO:0004721) |
| 0.0 | 4.1 | GO:0019901 | protein kinase binding(GO:0019901) |
| 0.1 | 2.6 | GO:0005381 | iron ion transmembrane transporter activity(GO:0005381) |
| 0.1 | 2.5 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.0 | 2.4 | GO:0000295 | adenine nucleotide transmembrane transporter activity(GO:0000295) |
| 0.0 | 2.4 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
| 0.0 | 2.4 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 2.4 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.3 | 2.3 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.1 | 2.3 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.6 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.3 | 1.3 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.7 | PID E2F PATHWAY | E2F transcription factor network |
| 0.2 | 0.5 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.1 | 0.3 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.1 | 0.2 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.0 | 0.1 | PID FANCONI PATHWAY | Fanconi anemia pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.1 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 0.9 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.2 | 0.8 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 0.2 | 0.7 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.1 | 0.6 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.5 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.1 | 0.5 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.4 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.1 | 0.3 | REACTOME MRNA PROCESSING | Genes involved in mRNA Processing |
| 0.1 | 0.3 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |