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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G06960
Z-value: 0.89
Transcription factors associated with AT5G06960
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G06960
|
AT5G06960 | OCS-element binding factor 5 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| OBF5 | arTal_v1_Chr5_+_2154746_2154748 | -0.76 | 1.7e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 1.59 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr5_+_16441808_16441808 Show fit | 1.48 |
AT5G41080.2
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_16441655_16441655 Show fit | 1.47 |
AT5G41080.1
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr1_+_30241452_30241452 Show fit | 1.20 |
AT1G80440.1
|
Galactose oxidase/kelch repeat superfamily protein |
|
| arTal_v1_Chr5_+_6414488_6414488 Show fit | 1.13 |
AT5G19120.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr1_-_2747936_2747967 Show fit | 1.05 |
AT1G08630.6
AT1G08630.7 AT1G08630.5 AT1G08630.2 |
threonine aldolase 1 |
|
| arTal_v1_Chr1_+_3777236_3777236 Show fit | 0.99 |
AT1G11260.1
|
sugar transporter 1 |
|
| arTal_v1_Chr4_-_9754161_9754161 Show fit | 0.97 |
AT4G17490.1
|
ethylene responsive element binding factor 6 |
|
| arTal_v1_Chr3_-_2130451_2130451 Show fit | 0.95 |
AT3G06750.1
|
hydroxyproline-rich glycoprotein family protein |
|
| arTal_v1_Chr5_-_8502224_8502224 Show fit | 0.95 |
AT5G24770.1
AT5G24770.2 |
vegetative storage protein 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G06960
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.7 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.9 | 3.4 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.5 | 2.9 | GO:0006567 | threonine catabolic process(GO:0006567) |
| 0.1 | 2.7 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.1 | 1.9 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
| 0.0 | 1.8 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.1 | 1.7 | GO:0015749 | monosaccharide transport(GO:0015749) |
| 0.0 | 1.6 | GO:0010431 | seed maturation(GO:0010431) |
| 0.1 | 1.3 | GO:0009864 | induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864) |
| 0.1 | 1.3 | GO:0006814 | sodium ion transport(GO:0006814) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 1.3 | GO:0005615 | extracellular space(GO:0005615) |
| 0.0 | 1.1 | GO:0005811 | lipid particle(GO:0005811) |
| 0.2 | 0.7 | GO:0070382 | exocytic vesicle(GO:0070382) |
| 0.2 | 0.6 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
| 0.1 | 0.6 | GO:0001673 | male germ cell nucleus(GO:0001673) |
| 0.0 | 0.6 | GO:0031201 | SNARE complex(GO:0031201) |
| 0.1 | 0.5 | GO:0000153 | cytoplasmic ubiquitin ligase complex(GO:0000153) |
| 0.0 | 0.5 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.1 | 0.4 | GO:0009514 | glyoxysome(GO:0009514) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 2.9 | GO:0004793 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
| 0.2 | 2.9 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.3 | 2.4 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.1 | 2.4 | GO:0015145 | monosaccharide transmembrane transporter activity(GO:0015145) |
| 0.4 | 1.9 | GO:0016629 | 12-oxophytodienoate reductase activity(GO:0016629) |
| 0.0 | 1.6 | GO:0015385 | sodium:proton antiporter activity(GO:0015385) |
| 0.1 | 1.4 | GO:0032440 | 2-alkenal reductase [NAD(P)] activity(GO:0032440) |
| 0.0 | 1.2 | GO:0015035 | protein disulfide oxidoreductase activity(GO:0015035) |
| 0.2 | 1.1 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.0 | 1.1 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.4 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.0 | 0.2 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.0 | 0.1 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.5 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.4 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.1 | 0.3 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.0 | 0.1 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |