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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G06839
Z-value: 1.01
Transcription factors associated with AT5G06839
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G06839
|
AT5G06839 | bZIP transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TGA10 | arTal_v1_Chr5_+_2120472_2120527 | 0.28 | 3.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 2.93 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr5_-_16998925_16998925 Show fit | 2.21 |
AT5G42510.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr3_-_7656053_7656053 Show fit | 1.63 |
AT3G21720.1
|
isocitrate lyase |
|
| arTal_v1_Chr5_+_1461786_1461786 Show fit | 1.44 |
AT5G04960.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr4_-_17041131_17041131 Show fit | 1.41 |
AT4G36010.2
|
Pathogenesis-related thaumatin superfamily protein |
|
| arTal_v1_Chr4_-_17041326_17041326 Show fit | 1.40 |
AT4G36010.1
|
Pathogenesis-related thaumatin superfamily protein |
|
| arTal_v1_Chr5_-_6413259_6413311 Show fit | 1.39 |
AT5G19110.1
AT5G19110.2 |
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr2_-_9564850_9564850 Show fit | 1.28 |
AT2G22500.1
|
uncoupling protein 5 |
|
| arTal_v1_Chr4_+_1569937_1569937 Show fit | 1.25 |
AT4G03540.1
|
Uncharacterized protein family (UPF0497) |
|
| arTal_v1_Chr1_-_28823727_28823727 Show fit | 1.21 |
AT1G76790.1
|
O-methyltransferase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G06839
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.4 | GO:0009759 | indole glucosinolate biosynthetic process(GO:0009759) |
| 0.0 | 2.4 | GO:0010431 | seed maturation(GO:0010431) |
| 0.4 | 1.6 | GO:0006097 | glyoxylate cycle(GO:0006097) |
| 0.0 | 1.6 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.4 | 1.3 | GO:0015709 | thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422) |
| 0.1 | 1.1 | GO:1901072 | aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072) |
| 0.2 | 1.0 | GO:1902767 | farnesyl diphosphate biosynthetic process, mevalonate pathway(GO:0010142) isoprenoid biosynthetic process via mevalonate(GO:1902767) |
| 0.2 | 1.0 | GO:0006272 | leading strand elongation(GO:0006272) |
| 0.0 | 1.0 | GO:0009785 | blue light signaling pathway(GO:0009785) intracellular receptor signaling pathway(GO:0030522) |
| 0.3 | 0.9 | GO:0044259 | collagen metabolic process(GO:0032963) multicellular organism metabolic process(GO:0044236) multicellular organismal macromolecule metabolic process(GO:0044259) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.5 | 1.6 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.0 | 0.9 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 0.6 | GO:0009986 | cell surface(GO:0009986) |
| 0.2 | 0.5 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
| 0.1 | 0.4 | GO:0070505 | pollen coat(GO:0070505) |
| 0.0 | 0.4 | GO:0005798 | Golgi-associated vesicle(GO:0005798) |
| 0.1 | 0.3 | GO:1990415 | Pex17p-Pex14p docking complex(GO:1990415) peroxisomal importomer complex(GO:1990429) |
| 0.1 | 0.3 | GO:0000836 | ER ubiquitin ligase complex(GO:0000835) Hrd1p ubiquitin ligase complex(GO:0000836) Hrd1p ubiquitin ligase ERAD-L complex(GO:0000839) |
| 0.0 | 0.3 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.8 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
| 0.1 | 1.6 | GO:0016833 | oxo-acid-lyase activity(GO:0016833) |
| 0.0 | 1.5 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.4 | 1.3 | GO:0015117 | thiosulfate transmembrane transporter activity(GO:0015117) |
| 0.0 | 1.3 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.0 | 1.2 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.0 | 1.2 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
| 0.0 | 1.1 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.3 | 1.0 | GO:0004421 | hydroxymethylglutaryl-CoA synthase activity(GO:0004421) |
| 0.0 | 1.0 | GO:0015171 | amino acid transmembrane transporter activity(GO:0015171) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.0 | 0.1 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.3 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.1 | REACTOME NUCLEAR SIGNALING BY ERBB4 | Genes involved in Nuclear signaling by ERBB4 |