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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G06839

Z-value: 1.01

Transcription factors associated with AT5G06839

Gene Symbol Gene ID Gene Info
AT5G06839
AT5G06839 bZIP transcription factor family protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
TGA10arTal_v1_Chr5_+_2120472_21205270.283.3e-01Click!

Activity profile of AT5G06839 motif

Sorted Z-values of AT5G06839 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_+_6826587 2.93 AT4G11190.1
AT4G11190
Disease resistance-responsive (dirigent-like protein) family protein
Chr5_-_16998925 2.21 AT5G42510.1
AT5G42510
Disease resistance-responsive (dirigent-like protein) family protein
Chr3_-_7656053 1.63 AT3G21720.1
ICL
isocitrate lyase
Chr5_+_1461786 1.44 AT5G04960.1
AT5G04960
Plant invertase/pectin methylesterase inhibitor superfamily
Chr4_-_17041131 1.41 AT4G36010.2
AT4G36010
Pathogenesis-related thaumatin superfamily protein
Chr4_-_17041326 1.40 AT4G36010.1
AT4G36010
Pathogenesis-related thaumatin superfamily protein
Chr5_-_6413259 1.39 AT5G19110.1
AT5G19110.2
AT5G19110
Eukaryotic aspartyl protease family protein
Chr2_-_9564850 1.28 AT2G22500.1
UCP5
uncoupling protein 5
Chr4_+_1569937 1.25 AT4G03540.1
AT4G03540
Uncharacterized protein family (UPF0497)
Chr1_-_28823727 1.21 AT1G76790.1
IGMT5
O-methyltransferase family protein
Chr5_+_1672070 1.21 AT5G05600.1
AT5G05600.2
AT5G05600
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr5_+_23187840 1.17 AT5G57220.1
CYP81F2
cytochrome P450, family 81, subfamily F, polypeptide 2
Chr2_-_16780368 1.09 AT2G40170.1
GEA6
Stress induced protein
Chr1_-_473160 1.07 AT1G02360.1
AT1G02360.2
AT1G02360.3
AT1G02360
Chitinase family protein
Chr5_+_84474 1.05 AT5G01210.1
AT5G01210
HXXXD-type acyl-transferase family protein
Chr4_-_16740601 0.98 AT4G35180.2
AT4G35180.1
LHT7
LYS/HIS transporter 7
Chr1_+_12233632 0.96 AT1G33750.1
AT1G33750
Terpenoid cyclases/Protein prenyltransferases superfamily protein
Chr3_+_21893812 0.96 AT3G59220.1
PRN
pirin
Chr5_-_24333144 0.93 AT5G60520.1
AT5G60520
Late embryogenesis abundant (LEA) protein-like protein
Chr1_+_789820 0.93 AT1G03230.1
AT1G03230
Eukaryotic aspartyl protease family protein
Chr1_+_27681358 0.90 AT1G73620.1
AT1G73620
Pathogenesis-related thaumatin superfamily protein
Chr5_+_21069495 0.90 AT5G51830.2
AT5G51830
pfkB-like carbohydrate kinase family protein
Chr5_+_21069110 0.89 AT5G51830.1
AT5G51830
pfkB-like carbohydrate kinase family protein
Chr4_-_9368852 0.84 AT4G16640.1
AT4G16640
Matrixin family protein
Chr2_+_15059763 0.84 AT2G35860.1
FLA16
FASCICLIN-like arabinogalactan protein 16 precursor
Chr5_+_5935038 0.84 AT5G17920.1
AT5G17920.2
ATMS1
Cobalamin-independent synthase family protein
Chr1_+_2263037 0.84 AT1G07370.1
PCNA1
proliferating cellular nuclear antigen 1
Chr3_+_5471735 0.83 AT3G16150.1
ASPGB1
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Chr5_+_15141650 0.83 AT5G38000.1
AT5G38000.2
AT5G38000.3
AT5G38000
Zinc-binding dehydrogenase family protein
Chr1_+_786832 0.81 AT1G03220.1
AT1G03220
Eukaryotic aspartyl protease family protein
Chr5_+_20427749 0.81 AT5G50175.1
AT5G50175
transmembrane protein
Chr2_+_9592956 0.80 AT2G22590.1
AT2G22590
UDP-Glycosyltransferase superfamily protein
Chr3_+_17710160 0.78 AT3G47980.1
AT3G47980
Integral membrane HPP family protein
Chr1_+_20098522 0.76 AT1G53830.1
PME2
pectin methylesterase 2
Chr3_-_15903608 0.72 AT3G44190.2
AT3G44190.1
AT3G44190
FAD/NAD(P)-binding oxidoreductase family protein
Chr5_-_3883111 0.72 AT5G12020.1
HSP17.6II
17.6 kDa class II heat shock protein
Chr5_-_7496990 0.72 AT5G22570.1
WRKY38
WRKY DNA-binding protein 38
Chr4_+_923122 0.70 AT4G02090.1
AT4G02090
multidrug resistance protein ABC transporter family protein
Chr1_-_6278150 0.69 AT1G18250.2
AT1G18250.1
ATLP-1
Pathogenesis-related thaumatin superfamily protein
Chr5_-_23700226 0.69 AT5G58650.1
PSY1
plant peptide containing sulfated tyrosine 1
Chr1_+_6061895 0.68 AT1G17620.1
AT1G17620
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr5_+_17496855 0.67 AT5G43540.1
AT5G43540
C2H2 and C2HC zinc fingers superfamily protein
Chr5_-_22239187 0.67 AT5G54740.1
SESA5
seed storage albumin 5
Chr5_-_17758275 0.65 AT5G44120.2
AT5G44120.1
AT5G44120.3
CRA1
RmlC-like cupins superfamily protein
Chr1_+_5638779 0.64 AT1G16500.1
AT1G16500
filamentous hemagglutinin transporter
Chr3_+_3698658 0.64 AT3G11700.1
FLA18
FASCICLIN-like arabinogalactan protein 18 precursor
Chr5_+_16852628 0.63 AT5G42180.1
PER64
Peroxidase superfamily protein
Chr3_-_9471039 0.63 AT3G25882.1
NIMIN-2
NIM1-interacting 2
Chr4_-_16255760 0.62 AT4G33905.1
AT4G33905
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
Chr2_-_14592140 0.62 AT2G34650.1
PID
Protein kinase superfamily protein
Chr4_+_17583992 0.61 AT4G37400.1
CYP81F3
cytochrome P450, family 81, subfamily F, polypeptide 3
Chr5_+_26369045 0.60 AT5G65925.1
AT5G65925
hypothetical protein
Chr1_-_1043887 0.59 AT1G04040.1
AT1G04040
HAD superfamily, subfamily IIIB acid phosphatase
Chr4_-_7796041 0.59 AT4G13410.3
AT4G13410.2
AT4G13410.1
ATCSLA15
Nucleotide-diphospho-sugar transferases superfamily protein
Chr5_-_18536316 0.59 AT5G45690.1
AT5G45690
histone acetyltransferase (DUF1264)
Chr3_+_20065607 0.59 AT3G54200.1
AT3G54200
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr4_+_16637322 0.57 AT4G34930.1
AT4G34930
PLC-like phosphodiesterases superfamily protein
Chr3_+_5820832 0.56 AT3G17070.1
AT3G17070.2
AT3G17070
Peroxidase family protein
Chr3_+_9195334 0.56 AT3G25250.1
AGC2-1
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
Chr5_-_17033800 0.56 AT5G42590.1
CYP71A16
cytochrome P450, family 71, subfamily A, polypeptide 16
Chr5_+_1952505 0.54 AT5G06390.1
FLA17
FASCICLIN-like arabinogalactan protein 17 precursor
Chr5_-_7366799 0.53 AT5G22250.1
CAF1b
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Chr1_+_26423874 0.53 AT1G70170.1
MMP
matrix metalloproteinase
Chr2_-_14537556 0.53 AT2G34490.1
CYP710A2
cytochrome P450, family 710, subfamily A, polypeptide 2
Chr5_-_9333284 0.52 AT5G26660.2
AT5G26660.1
MYB86
myb domain protein 86
Chr3_-_7213401 0.52 AT3G20640.2
AT3G20640.4
AT3G20640.3
AT3G20640.1
AT3G20640
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr2_-_17002528 0.51 AT2G40750.1
WRKY54
WRKY DNA-binding protein 54
Chr5_+_18228768 0.51 AT5G45110.1
AT5G45110.2
NPR3
NPR1-like protein 3
Chr4_-_11623797 0.50 AT4G21903.2
AT4G21903.1
AT4G21903
MATE efflux family protein
Chr1_-_22360149 0.49 AT1G60730.2
AT1G60730.3
AT1G60730.1
AT1G60730
NAD(P)-linked oxidoreductase superfamily protein
Chr3_-_20142763 0.49 AT3G54400.1
AT3G54400
Eukaryotic aspartyl protease family protein
Chr4_+_17263564 0.49 AT4G36600.2
AT4G36600.1
AT4G36600
Late embryogenesis abundant (LEA) protein
Chr1_+_5389952 0.49 AT1G15670.1
AT1G15670
Galactose oxidase/kelch repeat superfamily protein
Chr3_-_22111609 0.49 AT3G59850.1
AT3G59850.2
AT3G59850
Pectin lyase-like superfamily protein
Chr1_-_24171502 0.48 AT1G65060.2
AT1G65060.1
4CL3
4-coumarate:CoA ligase 3
Chr1_-_7804038 0.48 AT1G22110.2
AT1G22110.1
AT1G22110
structural constituent of ribosome
Chr2_+_235925 0.48 AT2G01520.1
MLP328
MLP-like protein 328
Chr5_-_1371480 0.47 AT5G04740.2
AT5G04740.1
ACR12
ACT domain-containing protein
Chr5_-_20940895 0.47 AT5G51550.1
EXL3
EXORDIUM like 3
Chr1_+_95935 0.47 AT1G01225.1
AT1G01225
NC domain-containing protein-like protein
Chr3_+_8960095 0.46 AT3G24550.1
PERK1
proline extensin-like receptor kinase 1
Chr3_+_2749908 0.46 AT3G09010.1
AT3G09010.2
AT3G09010
Protein kinase superfamily protein
Chr5_+_4756057 0.46 AT5G14730.1
AT5G14730
hypothetical protein
Chr4_-_17269999 0.45 AT4G36620.1
GATA19
GATA transcription factor 19
Chr5_-_26920179 0.45 AT5G67450.1
ZF1
zinc-finger protein 1
Chr1_+_26329863 0.44 AT1G69910.1
AT1G69910
Protein kinase superfamily protein
Chr5_+_26266180 0.44 AT5G65690.1
AT5G65690.2
AT5G65690.3
AT5G65690.4
PCK2
phosphoenolpyruvate carboxykinase 2
Chr5_+_25908247 0.44 AT5G64810.1
WRKY51
WRKY DNA-binding protein 51
Chr1_-_7802566 0.44 AT1G22110.3
AT1G22110
structural constituent of ribosome
Chr1_-_5068677 0.44 AT1G14720.1
XTH28
xyloglucan endotransglucosylase/hydrolase 28
Chr3_+_22349308 0.43 AT3G60490.1
AT3G60490
Integrase-type DNA-binding superfamily protein
Chr4_+_14087556 0.43 AT4G28520.1
AT4G28520.2
AT4G28520.4
AT4G28520.5
AT4G28520.3
CRU3
cruciferin 3
Chr5_+_24844248 0.42 AT5G61850.2
AT5G61850.1
LFY
floral meristem identity control protein LEAFY (LFY)
Chr5_-_20915879 0.42 AT5G51490.1
AT5G51490
Plant invertase/pectin methylesterase inhibitor superfamily
Chr2_+_16049918 0.42 AT2G38310.1
PYL4
PYR1-like 4
Chr3_-_19427230 0.42 AT3G52400.1
SYP122
syntaxin of plants 122
Chr2_-_18308494 0.41 AT2G44300.1
AT2G44300
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_9951762 0.41 AT1G28360.1
ERF12
ERF domain protein 12
Chr2_+_17927181 0.40 AT2G43120.2
AT2G43120.1
AT2G43120
RmlC-like cupins superfamily protein
Chr5_+_4615163 0.40 AT5G14310.1
CXE16
carboxyesterase 16
Chr1_-_24062804 0.40 AT1G64780.1
AMT1%3B2
ammonium transporter 1;2
Chr1_+_18035967 0.40 AT1G48750.1
AT1G48750
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_-_1547798 0.40 AT1G05300.2
AT1G05300.1
ZIP5
zinc transporter 5 precursor
Chr3_+_2156736 0.40 AT3G06840.1
AT3G06840
hypothetical protein
Chr3_-_20606650 0.39 AT3G55560.1
AGF2
AT-hook protein of GA feedback 2
Chr5_+_25371091 0.39 AT5G63300.1
AT5G63300.2
AT5G63300
Ribosomal protein S21 family protein
Chr5_-_3003262 0.39 AT5G09690.4
AT5G09690.3
AT5G09690.9
AT5G09690.5
AT5G09690.1
AT5G09690.7
AT5G09690.14
AT5G09690.8
AT5G09690.6
AT5G09690.11
AT5G09690.2
AT5G09690.13
AT5G09690.10
AT5G09690.12
MGT7
magnesium transporter 7
Chr5_+_7524086 0.38 AT5G22630.1
ADT5
arogenate dehydratase 5
Chr1_-_23892193 0.38 AT1G64380.1
AT1G64380
Integrase-type DNA-binding superfamily protein
Chr4_-_11624459 0.38 AT4G21903.3
AT4G21903
MATE efflux family protein
Chr3_-_4496800 0.37 AT3G13720.1
PRA8
PRA1 (Prenylated rab acceptor) family protein
Chr1_+_27397089 0.37 AT1G72800.1
AT1G72800
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr1_+_16739192 0.36 AT1G44050.1
AT1G44050
Cysteine/Histidine-rich C1 domain family protein
Chr5_-_4206458 0.35 AT5G13190.2
AT5G13190.1
GILP
GSH-induced LITAF domain protein
Chr3_-_18902152 0.35 AT3G50850.1
AT3G50850
Putative methyltransferase family protein
Chr2_-_7496292 0.35 AT2G17230.1
EXL5
EXORDIUM like 5
Chr2_+_18577500 0.35 AT2G45040.1
AT2G45040
Matrixin family protein
Chr5_-_3845711 0.35 AT5G11930.1
AT5G11930
Thioredoxin superfamily protein
Chr1_-_436922 0.35 AT1G02230.1
NAC004
NAC domain containing protein 4
Chr4_+_15819489 0.34 AT4G32800.1
AT4G32800
Integrase-type DNA-binding superfamily protein
Chr3_-_19174739 0.34 AT3G51680.1
SDR2
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_-_21192217 0.34 AT1G56555.1
AT1G56555
transmembrane protein
Chr2_+_18727504 0.34 AT2G45430.1
AHL22
AT-hook motif nuclear-localized protein 22
Chr5_-_1267416 0.34 AT5G04470.1
SIM
cyclin-dependent protein kinase inhibitor
Chr4_-_7112103 0.33 AT4G11820.2
HMGS
hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase
Chr2_+_15602863 0.33 AT2G37140.1
AT2G37140
Terpenoid synthases superfamily protein
Chr4_-_7112480 0.33 AT4G11820.3
HMGS
hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase
Chr4_-_7111813 0.33 AT4G11820.1
HMGS
hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase
Chr5_-_13740702 0.33 AT5G35555.1
AT5G35555

Chr2_+_6761635 0.32 AT2G15490.2
AT2G15490.3
AT2G15490.1
UGT73B4
UDP-glycosyltransferase 73B4
Chr4_+_13732832 0.32 AT4G27460.1
CBSX5
Cystathionine beta-synthase (CBS) family protein
Chr1_-_3764483 0.32 AT1G11230.2
AT1G11230.1
AT1G11230
transmembrane protein, putative (DUF761)
Chr5_-_6042938 0.32 AT5G18270.2
AT5G18270.1
ANAC087
NAC domain containing protein 87
Chr1_+_5737839 0.31 AT1G16770.2
AT1G16770.1
AT1G16770.3
AT1G16770
hypothetical protein
Chr4_+_14444553 0.31 AT4G29330.1
AT4G29330.2
DER1
DERLIN-1
Chr4_-_780201 0.31 AT4G01810.2
AT4G01810.3
AT4G01810
Sec23/Sec24 protein transport family protein
Chr4_-_7319774 0.30 AT4G12330.1
CYP706A7
cytochrome P450, family 706, subfamily A, polypeptide 7
Chr4_+_1032350 0.30 AT4G02330.1
ATPMEPCRB
Plant invertase/pectin methylesterase inhibitor superfamily
Chr1_-_8912642 0.30 AT1G25400.2
AT1G25400
transmembrane protein
Chr2_+_11368474 0.30 AT2G26700.1
PID2
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
Chr4_-_780355 0.30 AT4G01810.1
AT4G01810
Sec23/Sec24 protein transport family protein
Chr1_+_218834 0.29 AT1G01600.1
CYP86A4
cytochrome P450, family 86, subfamily A, polypeptide 4
Chr1_-_8912822 0.29 AT1G25400.1
AT1G25400
transmembrane protein
Chr4_+_8054861 0.29 AT4G13940.4
AT4G13940.3
AT4G13940.2
HOG1
S-adenosyl-L-homocysteine hydrolase
Chr1_+_28746833 0.29 AT1G76600.1
AT1G76600
poly polymerase
Chr3_-_21036166 0.29 AT3G56800.1
CAM3
calmodulin 3
Chr3_-_16359983 0.29 AT3G44810.1
AT3G44810
F-box family protein
Chr4_+_8054673 0.29 AT4G13940.1
HOG1
S-adenosyl-L-homocysteine hydrolase
Chr3_+_1186440 0.29 AT3G04460.1
AT3G04460.2
PEX12
peroxin-12
Chr2_-_9173490 0.29 AT2G21430.1
AT2G21430
Papain family cysteine protease
Chr1_+_26666383 0.28 AT1G70720.2
AT1G70720.1
AT1G70720
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr4_+_15377158 0.28 AT4G31790.1
AT4G31790.2
AT4G31790
Tetrapyrrole (Corrin/Porphyrin) Methylase
Chr1_+_19488755 0.28 AT1G52330.1
AT1G52330.2
AT1G52330
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr4_+_17592996 0.28 AT4G37420.1
AT4G37420
glycosyltransferase family protein (DUF23)
Chr2_+_710618 0.28 AT2G02610.1
AT2G02610
Cysteine/Histidine-rich C1 domain family protein
Chr4_-_9686928 0.27 AT4G17310.14
AT4G17310.16
AT4G17310.15
AT4G17310.17
AT4G17310.3
AT4G17310.4
AT4G17310.8
AT4G17310.5
AT4G17310.7
AT4G17310.6
AT4G17310.2
AT4G17310.10
AT4G17310.9
AT4G17310.12
AT4G17310.1
AT4G17310.13
AT4G17310.11
AT4G17310
hypothetical protein
Chr2_+_12103672 0.27 AT2G28340.1
GATA13
GATA transcription factor 13
Chr2_-_15127771 0.27 AT2G36030.1
AT2G36030
hypothetical protein
Chr2_-_16235234 0.27 AT2G38860.3
AT2G38860.1
AT2G38860.2
YLS5
Class I glutamine amidotransferase-like superfamily protein
Chr3_-_11127592 0.27 AT3G29156.1
AT3G29156

Chr2_+_8791939 0.27 AT2G20370.1
MUR3
Exostosin family protein
Chr3_-_2343697 0.27 AT3G07340.2
AT3G07340.1
AT3G07340
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr1_-_4959529 0.27 AT1G14490.2
AT1G14490
Putative AT-hook DNA-binding family protein
Chr5_-_18276586 0.27 AT5G45180.1
AT5G45180
Flavin-binding monooxygenase family protein
Chr1_+_27876905 0.26 AT1G74140.2
AT1G74140.1
AT1G74140.3
AT1G74140.5
AT1G74140.4
AT1G74140
Rhomboid-related intramembrane serine protease family protein
Chr5_+_25191402 0.26 AT5G62720.1
AT5G62720
Integral membrane HPP family protein
Chr3_-_3003454 0.26 AT3G09780.1
CCR1
CRINKLY4 related 1
Chr1_+_19879405 0.25 AT1G53300.1
TTL1
tetratricopetide-repeat thioredoxin-like 1
Chr4_+_13844059 0.25 AT4G27760.1
FEY
NAD(P)-binding Rossmann-fold superfamily protein
Chr5_+_24386010 0.25 AT5G60680.1
AT5G60680
transcription initiation factor TFIID subunit (Protein of unknown function, DUF584)
Chr1_+_267993 0.25 AT1G01720.1
ATAF1
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Chr3_+_5006526 0.25 AT3G14880.1
AT3G14880.2
AT3G14880
transcription factor-like protein
Chr5_+_76872 0.25 AT5G01200.1
AT5G01200
Duplicated homeodomain-like superfamily protein
Chr1_-_4959325 0.24 AT1G14490.1
AT1G14490
Putative AT-hook DNA-binding family protein
Chr2_-_12727253 0.24 AT2G29810.1
AT2G29810
Galactose oxidase/kelch repeat superfamily protein
Chr5_+_8378759 0.24 AT5G24530.1
DMR6
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr3_-_2491180 0.24 AT3G07800.1
TK1a
Thymidine kinase
Chr5_+_15131289 0.24 AT5G37980.1
AT5G37980
Zinc-binding dehydrogenase family protein
Chr1_+_26157702 0.24 AT1G69560.2
AT1G69560.1
MYB105
myb domain protein 105
Chr5_-_3823891 0.23 AT5G11860.4
SSP5
SCP1-like small phosphatase 5
Chr2_+_17663353 0.23 AT2G42430.1
LBD16
lateral organ boundaries-domain 16
Chr5_+_26660311 0.23 AT5G66770.1
AT5G66770
GRAS family transcription factor
Chr1_-_10203491 0.23 AT1G29195.1
AT1G29195
phosphatidylinositol 4-phosphate 5-kinase MSS4-like protein
Chr4_+_10368755 0.23 AT4G18920.1
AT4G18920
histone acetyltransferase (DUF1264)
Chr3_-_3551661 0.22 AT3G11325.1
AT3G11325.2
AT3G11325
Phospholipid/glycerol acyltransferase family protein
Chr4_+_12527675 0.22 AT4G24130.1
AT4G24130
DUF538 family protein (Protein of unknown function, DUF538)
Chr5_+_11615250 0.22 AT5G30500.2
AT5G30500.1
GolS10
Nucleotide-diphospho-sugar transferases superfamily protein
Chr5_-_25908 0.22 AT5G01070.1
AT5G01070
RING/FYVE/PHD zinc finger superfamily protein
Chr5_-_3824236 0.22 AT5G11860.5
AT5G11860.2
AT5G11860.1
AT5G11860.3
SSP5
SCP1-like small phosphatase 5
Chr1_-_498539 0.21 AT1G02450.1
NIMIN1
NIM1-interacting 1
Chr3_+_2161735 0.21 AT3G06860.1
MFP2
multifunctional protein 2
Chr4_+_387451 0.21 AT4G00905.1
AT4G00905
NC domain-containing protein-like protein
Chr5_+_25191860 0.21 AT5G62720.2
AT5G62720
Integral membrane HPP family protein
Chr2_+_18977344 0.21 AT2G46210.1
SLD2
Fatty acid/sphingolipid desaturase
Chr3_-_4059284 0.21 AT3G12770.1
MEF22
mitochondrial editing factor 22
Chr2_+_17728479 0.20 AT2G42580.1
TTL3
tetratricopetide-repeat thioredoxin-like 3
Chr5_-_25029933 0.20 AT5G62320.1
MYB99
myb domain protein 99
Chr1_-_3761461 0.20 AT1G11220.2
AT1G11220
cotton fiber, putative (DUF761)
Chr3_-_8048667 0.20 AT3G22770.1
AT3G22770
F-box associated ubiquitination effector family protein
Chr1_+_6571184 0.19 AT1G19030.1
AT1G19030

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G06839

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.3 GO:0015709 thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422)
0.4 1.6 GO:0006097 glyoxylate cycle(GO:0006097)
0.4 2.4 GO:0009759 indole glucosinolate biosynthetic process(GO:0009759)
0.3 0.9 GO:0044259 collagen metabolic process(GO:0032963) multicellular organism metabolic process(GO:0044236) multicellular organismal macromolecule metabolic process(GO:0044259)
0.3 0.8 GO:0016540 protein autoprocessing(GO:0016540)
0.2 1.0 GO:1902767 farnesyl diphosphate biosynthetic process, mevalonate pathway(GO:0010142) isoprenoid biosynthetic process via mevalonate(GO:1902767)
0.2 0.6 GO:0046498 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
0.2 0.8 GO:0051574 positive regulation of histone H3-K9 methylation(GO:0051574)
0.2 1.0 GO:0006272 leading strand elongation(GO:0006272)
0.1 0.4 GO:0010185 regulation of cellular defense response(GO:0010185)
0.1 0.3 GO:0042353 fucose biosynthetic process(GO:0042353)
0.1 0.2 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.1 0.4 GO:0034051 negative regulation of plant-type hypersensitive response(GO:0034051)
0.1 0.5 GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening(GO:0000289)
0.1 0.3 GO:0009647 skotomorphogenesis(GO:0009647)
0.1 1.1 GO:1901072 aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072)
0.1 0.3 GO:0042149 cellular response to glucose starvation(GO:0042149)
0.1 0.2 GO:0043132 NAD transport(GO:0043132)
0.1 0.6 GO:0042343 indole glucosinolate metabolic process(GO:0042343)
0.0 0.1 GO:0030100 regulation of endocytosis(GO:0030100)
0.0 0.2 GO:0019336 phenol-containing compound catabolic process(GO:0019336)
0.0 0.5 GO:0009094 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.0 0.2 GO:0060145 viral gene silencing in virus induced gene silencing(GO:0060145)
0.0 1.0 GO:0009785 blue light signaling pathway(GO:0009785) intracellular receptor signaling pathway(GO:0030522)
0.0 0.1 GO:0010028 xanthophyll cycle(GO:0010028)
0.0 0.5 GO:1900056 negative regulation of leaf senescence(GO:1900056)
0.0 0.4 GO:1903830 magnesium ion transmembrane transport(GO:1903830)
0.0 0.3 GO:0046104 deoxyribonucleoside metabolic process(GO:0009120) thymidine metabolic process(GO:0046104) pyrimidine deoxyribonucleoside metabolic process(GO:0046125)
0.0 0.6 GO:0048766 root hair initiation(GO:0048766)
0.0 0.8 GO:0010112 regulation of systemic acquired resistance(GO:0010112)
0.0 0.4 GO:0080086 stamen filament development(GO:0080086)
0.0 0.4 GO:0010077 maintenance of inflorescence meristem identity(GO:0010077)
0.0 0.1 GO:0045827 positive regulation of abscisic acid biosynthetic process(GO:0010116) negative regulation of isoprenoid metabolic process(GO:0045827)
0.0 2.4 GO:0010431 seed maturation(GO:0010431)
0.0 0.4 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.0 0.3 GO:0006513 protein monoubiquitination(GO:0006513)
0.0 0.4 GO:0051762 sesquiterpene biosynthetic process(GO:0051762)
0.0 0.2 GO:0010199 organ boundary specification between lateral organs and the meristem(GO:0010199)
0.0 0.6 GO:0006722 triterpenoid metabolic process(GO:0006722)
0.0 0.7 GO:0016117 tetraterpenoid biosynthetic process(GO:0016109) carotenoid biosynthetic process(GO:0016117)
0.0 0.2 GO:0017182 peptidyl-diphthamide metabolic process(GO:0017182) peptidyl-diphthamide biosynthetic process from peptidyl-histidine(GO:0017183) peptidyl-histidine modification(GO:0018202)
0.0 0.4 GO:0009901 anther dehiscence(GO:0009901)
0.0 0.1 GO:0006624 vacuolar protein processing(GO:0006624)
0.0 0.1 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.0 0.6 GO:0042744 hydrogen peroxide catabolic process(GO:0042744)
0.0 1.6 GO:0045490 pectin catabolic process(GO:0045490)
0.0 0.1 GO:0090059 protoxylem development(GO:0090059)
0.0 0.1 GO:0030322 stabilization of membrane potential(GO:0030322)
0.0 0.7 GO:0051259 protein oligomerization(GO:0051259)
0.0 0.5 GO:0010584 pollen exine formation(GO:0010584)
0.0 0.2 GO:0009554 megasporogenesis(GO:0009554)
0.0 0.4 GO:0007166 cell surface receptor signaling pathway(GO:0007166)
0.0 0.4 GO:0006094 gluconeogenesis(GO:0006094)
0.0 0.5 GO:2000022 regulation of jasmonic acid mediated signaling pathway(GO:2000022)
0.0 0.7 GO:0009863 salicylic acid mediated signaling pathway(GO:0009863)
0.0 0.3 GO:0009269 response to desiccation(GO:0009269)
0.0 0.3 GO:0008361 regulation of cell size(GO:0008361)
0.0 0.3 GO:0030968 endoplasmic reticulum unfolded protein response(GO:0030968)
0.0 0.1 GO:0015749 monosaccharide transport(GO:0015749)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.6 GO:0009514 glyoxysome(GO:0009514)
0.2 0.5 GO:0030015 CCR4-NOT core complex(GO:0030015)
0.1 0.3 GO:1990415 Pex17p-Pex14p docking complex(GO:1990415) peroxisomal importomer complex(GO:1990429)
0.1 0.4 GO:0070505 pollen coat(GO:0070505)
0.1 0.3 GO:0000836 ER ubiquitin ligase complex(GO:0000835) Hrd1p ubiquitin ligase complex(GO:0000836) Hrd1p ubiquitin ligase ERAD-L complex(GO:0000839)
0.0 0.9 GO:0031012 extracellular matrix(GO:0031012)
0.0 0.3 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.0 0.6 GO:0009986 cell surface(GO:0009986)
0.0 0.1 GO:0008622 epsilon DNA polymerase complex(GO:0008622)
0.0 0.2 GO:0005763 mitochondrial small ribosomal subunit(GO:0005763)
0.0 2.8 GO:0009505 plant-type cell wall(GO:0009505)
0.0 0.1 GO:0000322 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.0 0.4 GO:0005798 Golgi-associated vesicle(GO:0005798)
0.0 0.1 GO:0000813 ESCRT I complex(GO:0000813)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.3 GO:0015117 thiosulfate transmembrane transporter activity(GO:0015117)
0.3 1.0 GO:0004421 hydroxymethylglutaryl-CoA synthase activity(GO:0004421)
0.3 0.8 GO:0008798 beta-aspartyl-peptidase activity(GO:0008798)
0.2 0.7 GO:0016767 geranylgeranyl-diphosphate geranylgeranyltransferase activity(GO:0016767)
0.2 0.6 GO:0016802 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
0.2 0.7 GO:0004174 electron-transferring-flavoprotein dehydrogenase activity(GO:0004174) oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor(GO:0016649)
0.2 0.5 GO:0000249 C-22 sterol desaturase activity(GO:0000249)
0.2 0.8 GO:0008705 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085)
0.1 1.6 GO:0016833 oxo-acid-lyase activity(GO:0016833)
0.1 0.5 GO:0004535 poly(A)-specific ribonuclease activity(GO:0004535)
0.1 0.3 GO:0019136 deoxynucleoside kinase activity(GO:0019136)
0.1 0.3 GO:1990381 ubiquitin-specific protease binding(GO:1990381)
0.1 0.3 GO:0070330 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
0.1 0.4 GO:0004664 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.1 0.3 GO:0004679 AMP-activated protein kinase activity(GO:0004679)
0.1 0.4 GO:0004611 phosphoenolpyruvate carboxykinase activity(GO:0004611)
0.1 0.2 GO:0042409 caffeoyl-CoA O-methyltransferase activity(GO:0042409)
0.1 0.2 GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives(GO:0016856)
0.1 0.6 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.0 0.2 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 1.1 GO:0004568 chitinase activity(GO:0004568)
0.0 0.3 GO:0008022 protein C-terminus binding(GO:0008022)
0.0 0.2 GO:0003680 AT DNA binding(GO:0003680)
0.0 0.3 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.0 1.8 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.0 0.1 GO:0005315 inorganic phosphate transmembrane transporter activity(GO:0005315)
0.0 0.5 GO:0008420 CTD phosphatase activity(GO:0008420)
0.0 1.2 GO:0008171 O-methyltransferase activity(GO:0008171)
0.0 0.3 GO:0102360 daphnetin 3-O-glucosyltransferase activity(GO:0102360)
0.0 1.2 GO:0045735 nutrient reservoir activity(GO:0045735)
0.0 0.4 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.0 0.2 GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor(GO:0016634)
0.0 0.3 GO:0032440 2-alkenal reductase [NAD(P)] activity(GO:0032440)
0.0 1.5 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.3 GO:0008106 alcohol dehydrogenase (NADP+) activity(GO:0008106)
0.0 0.9 GO:0004222 metalloendopeptidase activity(GO:0004222)
0.0 0.4 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.0 0.6 GO:0010333 terpene synthase activity(GO:0010333)
0.0 0.5 GO:0031490 chromatin DNA binding(GO:0031490)
0.0 0.1 GO:0022841 leak channel activity(GO:0022840) potassium ion leak channel activity(GO:0022841) narrow pore channel activity(GO:0022842)
0.0 0.1 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.0 0.5 GO:0033293 monocarboxylic acid binding(GO:0033293)
0.0 0.1 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.0 0.4 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.0 0.6 GO:0003993 acid phosphatase activity(GO:0003993)
0.0 0.2 GO:0051184 cofactor transporter activity(GO:0051184)
0.0 0.3 GO:0004499 N,N-dimethylaniline monooxygenase activity(GO:0004499)
0.0 0.7 GO:0043621 protein self-association(GO:0043621)
0.0 1.0 GO:0015171 amino acid transmembrane transporter activity(GO:0015171)
0.0 0.1 GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity(GO:0009815)
0.0 0.4 GO:0080030 methyl indole-3-acetate esterase activity(GO:0080030)
0.0 1.3 GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 PID REG GR PATHWAY Glucocorticoid receptor regulatory network
0.0 0.1 PID ERA GENOMIC PATHWAY Validated nuclear estrogen receptor alpha network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 REACTOME GLUCONEOGENESIS Genes involved in Gluconeogenesis
0.0 0.3 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines
0.0 0.1 REACTOME NUCLEAR SIGNALING BY ERBB4 Genes involved in Nuclear signaling by ERBB4