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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G06100
Z-value: 1.12
Transcription factors associated with AT5G06100
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G06100
|
AT5G06100 | myb domain protein 33 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB33 | arTal_v1_Chr5_+_1837835_1837914 | 0.08 | 8.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_21992812_21992814 Show fit | 1.03 |
AT5G54190.2
AT5G54190.1 |
protochlorophyllide oxidoreductase A |
|
| arTal_v1_Chr2_+_11135624_11135634 Show fit | 0.88 |
AT2G26150.2
AT2G26150.1 AT2G26150.4 AT2G26150.3 |
heat shock transcription factor A2 |
|
| arTal_v1_Chr5_-_816670_816670 Show fit | 0.71 |
AT5G03350.1
|
Legume lectin family protein |
|
| arTal_v1_Chr2_-_10454591_10454593 Show fit | 0.70 |
AT2G24600.2
AT2G24600.3 AT2G24600.4 AT2G24600.1 |
Ankyrin repeat family protein |
|
| arTal_v1_Chr3_+_11005638_11005638 Show fit | 0.70 |
AT3G29000.1
|
Calcium-binding EF-hand family protein |
|
| arTal_v1_Chr2_-_8850111_8850111 Show fit | 0.68 |
AT2G20560.1
|
DNAJ heat shock family protein |
|
| arTal_v1_Chr3_+_8918679_8918679 Show fit | 0.66 |
AT3G24500.2
|
multiprotein bridging factor 1C |
|
| arTal_v1_Chr1_+_3530353_3530451 Show fit | 0.64 |
AT1G10657.4
AT1G10657.2 AT1G10657.3 AT1G10657.1 |
transmembrane protein |
|
| arTal_v1_Chr5_-_19693845_19693845 Show fit | 0.63 |
AT5G48570.1
|
FKBP-type peptidyl-prolyl cis-trans isomerase family protein |
|
| arTal_v1_Chr3_+_8918267_8918267 Show fit | 0.63 |
AT3G24500.1
|
multiprotein bridging factor 1C |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G06100
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.4 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.1 | 3.3 | GO:0006986 | response to unfolded protein(GO:0006986) |
| 0.0 | 2.7 | GO:0046777 | protein autophosphorylation(GO:0046777) |
| 0.0 | 2.6 | GO:0002376 | immune system process(GO:0002376) |
| 0.0 | 2.4 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.1 | 1.9 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.0 | 1.8 | GO:0009625 | response to insect(GO:0009625) |
| 0.0 | 1.7 | GO:0034605 | cellular response to heat(GO:0034605) |
| 0.0 | 1.5 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.0 | 1.4 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.1 | GO:0009579 | thylakoid(GO:0009579) |
| 0.0 | 4.1 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 3.5 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 2.8 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 2.6 | GO:0022626 | cytosolic ribosome(GO:0022626) |
| 0.0 | 2.2 | GO:0042175 | nuclear outer membrane-endoplasmic reticulum membrane network(GO:0042175) |
| 0.0 | 1.9 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.0 | 1.9 | GO:0044216 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.1 | 1.8 | GO:0005871 | kinesin complex(GO:0005871) |
| 0.0 | 1.8 | GO:0098791 | Golgi subcompartment(GO:0098791) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.3 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 4.0 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.1 | 3.7 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.0 | 3.1 | GO:0043531 | ADP binding(GO:0043531) |
| 0.0 | 2.6 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 2.3 | GO:0003713 | transcription coactivator activity(GO:0003713) |
| 0.1 | 2.2 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.1 | 2.2 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.0 | 1.9 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 0.0 | 1.8 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.1 | 0.3 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.1 | 0.3 | PID FCER1 PATHWAY | Fc-epsilon receptor I signaling in mast cells |
| 0.0 | 0.3 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.1 | 0.2 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
| 0.1 | 0.2 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
| 0.1 | 0.2 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 0.0 | 0.2 | PID PTP1B PATHWAY | Signaling events mediated by PTP1B |
| 0.0 | 0.2 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.1 | PID P53 REGULATION PATHWAY | p53 pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.9 | REACTOME INFLUENZA LIFE CYCLE | Genes involved in Influenza Life Cycle |
| 0.1 | 0.5 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.0 | 0.5 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.3 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.1 | 0.3 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.1 | 0.3 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.1 | 0.3 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.1 | 0.3 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.1 | 0.3 | REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA | Genes involved in Processing of Capped Intron-Containing Pre-mRNA |
| 0.0 | 0.3 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |