Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT5G05790
Z-value: 1.47
Transcription factors associated with AT5G05790
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G05790
|
AT5G05790 | Duplicated homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G05790 | arTal_v1_Chr5_-_1742161_1742186 | -0.37 | 1.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_+_18347765_18347765 Show fit | 2.53 |
AT2G44460.2
|
beta glucosidase 28 |
|
| arTal_v1_Chr2_+_18346306_18346306 Show fit | 2.48 |
AT2G44460.1
|
beta glucosidase 28 |
|
| arTal_v1_Chr5_-_7828724_7828724 Show fit | 2.29 |
AT5G23240.1
|
DNAJ heat shock N-terminal domain-containing protein |
|
| arTal_v1_Chr3_-_2699257_2699257 Show fit | 1.77 |
AT3G08860.2
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr3_-_2699420_2699420 Show fit | 1.75 |
AT3G08860.1
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr1_-_19052582_19052582 Show fit | 1.55 |
AT1G51400.1
|
Photosystem II 5 kD protein |
|
| arTal_v1_Chr1_-_4682309_4682382 Show fit | 1.46 |
AT1G13650.3
AT1G13650.4 AT1G13650.2 AT1G13650.1 |
hypothetical protein |
|
| arTal_v1_Chr4_+_2324878_2324878 Show fit | 1.35 |
AT4G04610.1
|
APS reductase 1 |
|
| arTal_v1_Chr5_-_20208730_20208777 Show fit | 1.31 |
AT5G49740.3
AT5G49740.2 AT5G49740.1 |
ferric reduction oxidase 7 |
|
| arTal_v1_Chr4_-_13958107_13958107 Show fit | 1.28 |
AT4G28080.1
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G05790
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.5 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.3 | 3.9 | GO:0010244 | response to low fluence blue light stimulus by blue low-fluence system(GO:0010244) |
| 0.1 | 3.8 | GO:0051667 | chloroplast relocation(GO:0009902) establishment of plastid localization(GO:0051667) |
| 0.1 | 3.6 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.1 | 3.1 | GO:0016145 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.0 | 2.9 | GO:0045454 | cell redox homeostasis(GO:0045454) |
| 0.1 | 2.6 | GO:0009694 | jasmonic acid metabolic process(GO:0009694) |
| 0.4 | 2.3 | GO:1902326 | positive regulation of chlorophyll biosynthetic process(GO:1902326) |
| 0.2 | 2.3 | GO:0006265 | DNA topological change(GO:0006265) |
| 0.0 | 2.3 | GO:0007131 | reciprocal meiotic recombination(GO:0007131) reciprocal DNA recombination(GO:0035825) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 17.9 | GO:0042651 | photosynthetic membrane(GO:0034357) thylakoid membrane(GO:0042651) |
| 0.0 | 8.0 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.0 | 5.3 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 3.2 | GO:0005681 | spliceosomal complex(GO:0005681) |
| 0.2 | 3.1 | GO:0009508 | cytoplasmic chromosome(GO:0000229) plastid chromosome(GO:0009508) |
| 0.1 | 2.8 | GO:0005875 | microtubule associated complex(GO:0005875) |
| 0.0 | 2.8 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.2 | 2.0 | GO:0010168 | ER body(GO:0010168) |
| 0.0 | 2.0 | GO:0016604 | nuclear body(GO:0016604) |
| 0.1 | 1.9 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.2 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.3 | 3.5 | GO:0008453 | alanine-glyoxylate transaminase activity(GO:0008453) |
| 0.0 | 2.8 | GO:0043531 | ADP binding(GO:0043531) |
| 0.0 | 2.5 | GO:0003712 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
| 0.2 | 2.3 | GO:2001070 | starch binding(GO:2001070) |
| 0.0 | 2.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 2.1 | GO:0003713 | transcription coactivator activity(GO:0003713) |
| 0.0 | 2.1 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.2 | 2.0 | GO:0047617 | acyl-CoA hydrolase activity(GO:0047617) |
| 0.3 | 1.9 | GO:0016781 | phosphotransferase activity, paired acceptors(GO:0016781) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.9 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.6 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.1 | 0.4 | PID BARD1 PATHWAY | BARD1 signaling events |
| 0.1 | 0.3 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.0 | 0.1 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.0 | 0.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.1 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.3 | 0.9 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.1 | 0.9 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 0.7 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.6 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.1 | 0.6 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.1 | 0.3 | REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA | Genes involved in Processing of Capped Intron-Containing Pre-mRNA |
| 0.0 | 0.3 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.0 | 0.2 | REACTOME BASE EXCISION REPAIR | Genes involved in Base Excision Repair |
| 0.0 | 0.1 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |