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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G05550
Z-value: 4.59
Transcription factors associated with AT5G05550
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G05550
|
AT5G05550 | sequence-specific DNA binding transcription factor |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G05550 | arTal_v1_Chr5_-_1640960_1640960 | 0.86 | 9.2e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_20151163_20151163 Show fit | 5.59 |
AT5G49640.1
|
hypothetical protein |
|
| arTal_v1_Chr2_-_17710433_17710433 Show fit | 5.52 |
AT2G42530.1
|
cold regulated 15b |
|
| arTal_v1_Chr5_-_17199793_17199910 Show fit | 5.06 |
AT5G42900.1
AT5G42900.3 AT5G42900.2 |
cold regulated protein 27 |
|
| arTal_v1_Chr3_+_4729399_4729438 Show fit | 4.15 |
AT3G14210.1
AT3G14210.2 |
GDSL-like lipase/acylhydrolase superfamily protein |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 3.83 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr3_-_18718396_18718396 Show fit | 3.75 |
AT3G50440.1
|
methylesterase |
|
| arTal_v1_Chr4_+_9028262_9028262 Show fit | 3.72 |
AT4G15910.1
|
drought-induced 21 |
|
| arTal_v1_Chr3_-_82182_82182 Show fit | 3.62 |
AT3G01260.1
|
Galactose mutarotase-like superfamily protein |
|
| arTal_v1_Chr1_+_27778984_27778984 Show fit | 3.54 |
AT1G73870.1
|
B-box type zinc finger protein with CCT domain-containing protein |
|
| arTal_v1_Chr5_-_5692920_5692992 Show fit | 3.42 |
AT5G17300.2
AT5G17300.1 |
Homeodomain-like superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G05550
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 21.7 | GO:0006412 | translation(GO:0006412) |
| 0.0 | 12.1 | GO:0006468 | protein phosphorylation(GO:0006468) |
| 0.3 | 11.3 | GO:0072596 | protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596) |
| 0.2 | 11.1 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.2 | 8.7 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.2 | 8.6 | GO:0048506 | regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510) |
| 0.2 | 8.6 | GO:0072665 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.0 | 8.6 | GO:0010498 | proteasomal protein catabolic process(GO:0010498) |
| 0.4 | 8.4 | GO:0043572 | chloroplast fission(GO:0010020) plastid fission(GO:0043572) |
| 0.4 | 7.3 | GO:0006074 | (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 147.9 | GO:0005634 | nucleus(GO:0005634) |
| 0.1 | 94.2 | GO:0044434 | chloroplast part(GO:0044434) |
| 0.0 | 76.0 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 29.0 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.1 | 17.0 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.1 | 9.8 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.0 | 9.0 | GO:0005730 | nucleolus(GO:0005730) |
| 0.1 | 8.9 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 8.4 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.4 | 8.2 | GO:0009508 | plastid chromosome(GO:0009508) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 36.7 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 23.9 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.0 | 21.2 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.1 | 20.0 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 17.5 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.0 | 16.0 | GO:0003690 | double-stranded DNA binding(GO:0003690) |
| 0.0 | 13.5 | GO:0004672 | protein kinase activity(GO:0004672) |
| 0.1 | 12.4 | GO:0003924 | GTPase activity(GO:0003924) |
| 0.3 | 9.8 | GO:0016776 | phosphotransferase activity, phosphate group as acceptor(GO:0016776) |
| 0.1 | 8.9 | GO:0003724 | RNA helicase activity(GO:0003724) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 4.1 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.9 | 3.4 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.8 | 3.1 | PID PDGFRA PATHWAY | PDGFR-alpha signaling pathway |
| 0.9 | 2.6 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.5 | 2.1 | PID REELIN PATHWAY | Reelin signaling pathway |
| 0.7 | 2.0 | PID INTEGRIN3 PATHWAY | Beta3 integrin cell surface interactions |
| 0.5 | 1.6 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.2 | 1.3 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.3 | 1.2 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.3 | 1.1 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 7.0 | REACTOME 3 UTR MEDIATED TRANSLATIONAL REGULATION | Genes involved in 3' -UTR-mediated translational regulation |
| 1.2 | 3.5 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.3 | 2.4 | REACTOME BASE EXCISION REPAIR | Genes involved in Base Excision Repair |
| 0.7 | 2.2 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.7 | 2.2 | REACTOME ARMS MEDIATED ACTIVATION | Genes involved in ARMS-mediated activation |
| 0.4 | 2.2 | REACTOME APOPTOSIS | Genes involved in Apoptosis |
| 0.3 | 2.2 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.3 | 2.1 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.2 | 1.9 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.4 | 1.8 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |