Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT5G03790
Z-value: 0.88
Transcription factors associated with AT5G03790
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G03790
|
AT5G03790 | homeobox 51 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB51 | arTal_v1_Chr5_+_1004782_1004784 | -0.51 | 6.5e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_15135169_15135169 Show fit | 1.53 |
AT5G37990.1
|
S-adenosyl-L-methionine-dependent methyltransferase superfamily protein |
|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 1.41 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 1.37 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 1.36 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr5_+_9200271_9200271 Show fit | 1.31 |
AT5G26260.1
|
TRAF-like family protein |
|
| arTal_v1_Chr5_-_15167859_15167864 Show fit | 1.20 |
AT5G38020.2
AT5G38020.1 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 1.17 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 1.16 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_-_11194897_11194993 Show fit | 1.16 |
AT3G29250.2
AT3G29250.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr1_+_9829261_9829261 Show fit | 1.10 |
AT1G28135.1
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G03790
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 11.7 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 6.0 | GO:0071453 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456) |
| 0.1 | 5.4 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.2 | 4.1 | GO:0030091 | protein repair(GO:0030091) |
| 0.2 | 3.9 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.8 | 3.3 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.2 | 2.3 | GO:0009652 | thigmotropism(GO:0009652) |
| 0.1 | 2.2 | GO:0046688 | response to copper ion(GO:0046688) |
| 0.5 | 2.0 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.3 | 1.9 | GO:0010438 | cellular response to sulfur starvation(GO:0010438) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 32.2 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 11.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 1.8 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 1.7 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 1.2 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 1.1 | GO:0005811 | lipid particle(GO:0005811) |
| 0.1 | 1.0 | GO:0048226 | Casparian strip(GO:0048226) |
| 0.3 | 0.8 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
| 0.0 | 0.8 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.0 | 0.5 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.3 | GO:0005507 | copper ion binding(GO:0005507) |
| 0.0 | 3.8 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.3 | 3.6 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.4 | 3.3 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.1 | 3.2 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.1 | 3.2 | GO:0003993 | acid phosphatase activity(GO:0003993) |
| 0.4 | 2.9 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.0 | 2.7 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.1 | 2.2 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.2 | 2.1 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 0.8 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.8 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.2 | 0.7 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.0 | 0.5 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.4 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.3 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
| 0.1 | 0.3 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.3 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.1 | 0.3 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.3 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 0.6 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 0.5 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.1 | 0.4 | REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION | Genes involved in Apoptosis induced DNA fragmentation |
| 0.1 | 0.4 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.4 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.4 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 0.3 | REACTOME NOD1 2 SIGNALING PATHWAY | Genes involved in NOD1/2 Signaling Pathway |
| 0.1 | 0.3 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
| 0.1 | 0.3 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |