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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G03150
Z-value: 0.73
Transcription factors associated with AT5G03150
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G03150
|
AT5G03150 | C2H2-like zinc finger protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| JKD | arTal_v1_Chr5_+_745421_745421 | -0.39 | 1.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_7786161_7786161 Show fit | 0.67 |
AT4G13395.1
|
ROTUNDIFOLIA like 12 |
|
| arTal_v1_Chr1_+_3777236_3777236 Show fit | 0.65 |
AT1G11260.1
|
sugar transporter 1 |
|
| arTal_v1_Chr1_+_30241452_30241452 Show fit | 0.59 |
AT1G80440.1
|
Galactose oxidase/kelch repeat superfamily protein |
|
| arTal_v1_Chr2_-_8533779_8533779 Show fit | 0.57 |
AT2G19800.1
|
myo-inositol oxygenase 2 |
|
| arTal_v1_Chr2_-_18191280_18191348 Show fit | 0.54 |
AT2G43920.3
AT2G43920.4 AT2G43920.1 AT2G43920.2 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr1_-_2747936_2747967 Show fit | 0.54 |
AT1G08630.6
AT1G08630.7 AT1G08630.5 AT1G08630.2 |
threonine aldolase 1 |
|
| arTal_v1_Chr2_-_18190665_18190665 Show fit | 0.49 |
AT2G43920.6
AT2G43920.5 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr1_+_24028830_24028830 Show fit | 0.47 |
AT1G64660.1
|
methionine gamma-lyase |
|
| arTal_v1_Chr4_-_14009287_14009287 Show fit | 0.44 |
AT4G28270.1
|
RING membrane-anchor 2 |
|
| arTal_v1_Chr2_+_11985687_11985687 Show fit | 0.44 |
AT2G28120.1
|
Major facilitator superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G03150
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.9 | GO:0010200 | response to chitin(GO:0010200) |
| 0.3 | 1.5 | GO:0006567 | threonine catabolic process(GO:0006567) |
| 0.1 | 1.1 | GO:0015749 | monosaccharide transport(GO:0015749) |
| 0.0 | 1.0 | GO:0016104 | triterpenoid biosynthetic process(GO:0016104) |
| 0.1 | 0.9 | GO:0010929 | positive regulation of auxin mediated signaling pathway(GO:0010929) |
| 0.0 | 0.8 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.1 | 0.7 | GO:0051289 | protein homotetramerization(GO:0051289) |
| 0.0 | 0.7 | GO:0030488 | tRNA methylation(GO:0030488) |
| 0.0 | 0.7 | GO:0010187 | negative regulation of seed germination(GO:0010187) |
| 0.1 | 0.6 | GO:0019310 | inositol catabolic process(GO:0019310) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.4 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 1.0 | GO:0005811 | lipid particle(GO:0005811) |
| 0.1 | 0.5 | GO:0033063 | Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063) |
| 0.1 | 0.4 | GO:0031205 | endoplasmic reticulum Sec complex(GO:0031205) |
| 0.0 | 0.4 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.0 | 0.3 | GO:0005677 | chromatin silencing complex(GO:0005677) |
| 0.0 | 0.3 | GO:0016459 | myosin complex(GO:0016459) |
| 0.1 | 0.2 | GO:0031515 | tRNA (m1A) methyltransferase complex(GO:0031515) |
| 0.1 | 0.2 | GO:0005652 | nuclear lamina(GO:0005652) |
| 0.0 | 0.2 | GO:0000126 | transcription factor TFIIIB complex(GO:0000126) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.5 | GO:0004793 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
| 0.1 | 1.1 | GO:0015145 | monosaccharide transmembrane transporter activity(GO:0015145) |
| 0.2 | 1.0 | GO:0018708 | thiol S-methyltransferase activity(GO:0018708) |
| 0.0 | 1.0 | GO:0042300 | beta-amyrin synthase activity(GO:0042300) |
| 0.0 | 0.7 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
| 0.0 | 0.7 | GO:0044390 | ubiquitin-like protein conjugating enzyme binding(GO:0044390) |
| 0.1 | 0.6 | GO:0050113 | inositol oxygenase activity(GO:0050113) |
| 0.0 | 0.6 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.1 | 0.5 | GO:0000150 | recombinase activity(GO:0000150) |
| 0.1 | 0.5 | GO:0017057 | 6-phosphogluconolactonase activity(GO:0017057) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.0 | 0.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.1 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.0 | 0.0 | PID MYC PATHWAY | C-MYC pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.5 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.4 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.0 | 0.1 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.0 | 0.1 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.0 | 0.1 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |