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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G03150

Z-value: 0.73

Transcription factors associated with AT5G03150

Gene Symbol Gene ID Gene Info
AT5G03150
AT5G03150 C2H2-like zinc finger protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
JKDarTal_v1_Chr5_+_745421_745421-0.391.7e-01Click!

Activity profile of AT5G03150 motif

Sorted Z-values of AT5G03150 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_-_7786161 0.67 AT4G13395.1
RTFL12
ROTUNDIFOLIA like 12
Chr1_+_3777236 0.65 AT1G11260.1
STP1
sugar transporter 1
Chr1_+_30241452 0.59 AT1G80440.1
AT1G80440
Galactose oxidase/kelch repeat superfamily protein
Chr2_-_8533779 0.57 AT2G19800.1
MIOX2
myo-inositol oxygenase 2
Chr2_-_18191280 0.54 AT2G43920.3
AT2G43920.4
AT2G43920.1
AT2G43920.2
HOL2
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_-_2747936 0.54 AT1G08630.6
AT1G08630.7
AT1G08630.5
AT1G08630.2
THA1
threonine aldolase 1
Chr2_-_18190665 0.49 AT2G43920.6
AT2G43920.5
HOL2
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_+_24028830 0.47 AT1G64660.1
MGL
methionine gamma-lyase
Chr4_-_14009287 0.44 AT4G28270.1
RMA2
RING membrane-anchor 2
Chr2_+_11985687 0.44 AT2G28120.1
AT2G28120
Major facilitator superfamily protein
Chr3_-_18559326 0.43 AT3G50060.1
MYB77
myb domain protein 77
Chr1_-_3481041 0.43 AT1G10550.1
XTH33
xyloglucan:xyloglucosyl transferase 33
Chr1_+_28746833 0.42 AT1G76600.1
AT1G76600
poly polymerase
Chr1_-_1662259 0.41 AT1G05575.1
AT1G05575
transmembrane protein
Chr5_+_9683988 0.41 AT5G27420.1
CNI1
carbon/nitrogen insensitive 1
Chr1_+_22824414 0.41 AT1G61800.2
AT1G61800.1
GPT2
glucose-6-phosphate/phosphate translocator 2
Chr5_-_7250770 0.41 AT5G21940.1
AT5G21940
hybrid signal transduction histidine kinase M-like protein
Chr5_-_24767732 0.40 AT5G61600.1
ERF104
ethylene response factor 104
Chr4_+_15819489 0.40 AT4G32800.1
AT4G32800
Integrase-type DNA-binding superfamily protein
Chr4_+_17524461 0.40 AT4G37240.1
AT4G37240
HTH-type transcriptional regulator
Chr2_+_10072057 0.38 AT2G23690.1
AT2G23690
HTH-type transcriptional regulator
Chr1_+_4433605 0.38 AT1G12990.1
AT1G12990
beta-1,4-N-acetylglucosaminyltransferase family protein
Chr1_-_2190784 0.38 AT1G07135.1
AT1G07135
glycine-rich protein
Chr5_-_22759556 0.38 AT5G56230.1
PRA1.G2
prenylated RAB acceptor 1.G2
Chr2_+_13036814 0.38 AT2G30600.4
AT2G30600.5
AT2G30600.1
AT2G30600.3
AT2G30600
BTB/POZ domain-containing protein
Chr4_-_8004139 0.37 AT4G13800.10
AT4G13800.9
AT4G13800.4
AT4G13800.5
AT4G13800
magnesium transporter NIPA (DUF803)
Chr2_+_13037238 0.37 AT2G30600.6
AT2G30600.2
AT2G30600
BTB/POZ domain-containing protein
Chr3_+_4510965 0.37 AT3G13750.1
BGAL1
beta galactosidase 1
Chr4_-_17355891 0.36 AT4G36850.3
AT4G36850.4
AT4G36850.2
AT4G36850.1
AT4G36850
PQ-loop repeat family protein / transmembrane family protein
Chr5_+_6282881 0.36 AT5G18840.1
AT5G18840
Major facilitator superfamily protein
Chr4_-_11519805 0.36 AT4G21680.1
NRT1.8
NITRATE TRANSPORTER 1.8
Chr5_+_18524889 0.34 AT5G45660.1
AT5G45660
adenine phosphoribosyltransferase
Chr2_-_15137012 0.34 AT2G36050.1
OFP15
ovate family protein 15
Chr1_-_2746526 0.34 AT1G08630.4
THA1
threonine aldolase 1
Chr5_-_3517035 0.34 AT5G11070.1
AT5G11070
hypothetical protein
Chr1_-_2747243 0.33 AT1G08630.1
THA1
threonine aldolase 1
Chr4_-_8004509 0.33 AT4G13800.8
AT4G13800.7
AT4G13800.6
AT4G13800
magnesium transporter NIPA (DUF803)
Chr1_-_2746740 0.33 AT1G08630.3
THA1
threonine aldolase 1
Chr2_+_11852078 0.33 AT2G27810.1
AT2G27810.3
AT2G27810.2
AT2G27810.4
NAT12
nucleobase-ascorbate transporter 12
Chr1_+_26122080 0.33 AT1G69490.1
NAP
NAC-like, activated by AP3/PI
Chr1_-_25670345 0.33 AT1G68460.1
IPT1
isopentenyltransferase 1
Chr1_+_6450585 0.33 AT1G18710.1
MYB47
myb domain protein 47
Chr4_-_2332814 0.33 AT4G04630.1
AT4G04630
senescence regulator (Protein of unknown function, DUF584)
Chr5_-_26810116 0.32 AT5G67190.1
DEAR2
DREB and EAR motif protein 2
Chr2_+_19644021 0.32 AT2G48020.2
AT2G48020.1
AT2G48020.3
AT2G48020.4
AT2G48020
Major facilitator superfamily protein
Chr3_+_22142856 0.32 AT3G59940.1
AT3G59940
Galactose oxidase/kelch repeat superfamily protein
Chr2_+_16507882 0.32 AT2G39570.1
ACR9
ACT domain-containing protein
Chr4_-_8004767 0.32 AT4G13800.3
AT4G13800.1
AT4G13800.2
AT4G13800
magnesium transporter NIPA (DUF803)
Chr1_-_4243201 0.32 AT1G12440.1
AT1G12440.3
AT1G12440
A20/AN1-like zinc finger family protein
Chr1_-_4242963 0.32 AT1G12440.2
AT1G12440
A20/AN1-like zinc finger family protein
Chr2_-_12188293 0.31 AT2G28500.1
LBD11
LOB domain-containing protein 11
Chr3_+_17051520 0.31 AT3G46370.1
AT3G46370.2
AT3G46370
Leucine-rich repeat protein kinase family protein
Chr5_-_8707885 0.31 AT5G25190.1
ESE3
Integrase-type DNA-binding superfamily protein
Chr5_+_26854022 0.30 AT5G67300.1
MYBR1
myb domain protein r1
Chr1_+_27127170 0.30 AT1G72100.1
AT1G72100
late embryogenesis abundant domain-containing protein / LEA domain-containing protein
Chr5_-_763322 0.30 AT5G03210.1
DIP2
E3 ubiquitin-protein ligase
Chr1_-_30157808 0.30 AT1G80180.1
AT1G80180
hypothetical protein
Chr2_+_15549210 0.30 AT2G37025.2
TRFL8
TRF-like 8
Chr1_-_2260089 0.30 AT1G07350.6
AT1G07350.3
AT1G07350.2
AT1G07350.5
AT1G07350.4
AT1G07350.1
SR45a
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr1_-_18322284 0.30 AT1G49500.1
AT1G49500
transcription initiation factor TFIID subunit 1b-like protein
Chr5_-_122507 0.29 AT5G01300.2
AT5G01300.1
AT5G01300.3
AT5G01300
PEBP (phosphatidylethanolamine-binding protein) family protein
Chr2_+_15549052 0.29 AT2G37025.1
TRFL8
TRF-like 8
Chr1_-_4696023 0.29 AT1G13700.3
AT1G13700.2
PGL1
6-phosphogluconolactonase 1
Chr1_+_29214220 0.29 AT1G77730.1
AT1G77730
Pleckstrin homology (PH) domain superfamily protein
Chr3_+_11005638 0.29 AT3G29000.1
AT3G29000
Calcium-binding EF-hand family protein
Chr1_-_17091464 0.28 AT1G45163.1
AT1G45163
transmembrane protein
Chr1_-_18322505 0.28 AT1G49500.2
AT1G49500
transcription initiation factor TFIID subunit 1b-like protein
Chr2_-_852321 0.28 AT2G02930.1
GSTF3
glutathione S-transferase F3
Chr3_+_22434864 0.27 AT3G60690.1
AT3G60690
SAUR-like auxin-responsive protein family
Chr3_-_22651598 0.27 AT3G61190.2
AT3G61190.1
BAP1
BON association protein 1
Chr4_+_8344349 0.27 AT4G14540.1
NF-YB3
nuclear factor Y, subunit B3
Chr4_-_8779685 0.27 AT4G15370.1
AT4G15370.2
BARS1
baruol synthase 1
Chr5_-_22546801 0.27 AT5G55670.2
AT5G55670
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr1_-_27640643 0.27 AT1G73500.1
MKK9
MAP kinase kinase 9
Chr1_-_14172040 0.27 AT1G37140.1
AT1G37140.2
MCT1
MEI2 C-terminal RRM only like 1
Chr1_-_4526204 0.26 AT1G13245.1
RTFL17
ROTUNDIFOLIA like 17
Chr1_-_11801407 0.26 AT1G32640.1
MYC2
Basic helix-loop-helix (bHLH) DNA-binding family protein
Chr2_+_15549837 0.26 AT2G37025.3
TRFL8
TRF-like 8
Chr4_-_14439723 0.26 AT4G29310.1
AT4G29310.2
AT4G29310
DUF1005 family protein (DUF1005)
Chr5_-_16135347 0.26 AT5G40340.2
AT5G40340.1
AT5G40340
Tudor/PWWP/MBT superfamily protein
Chr2_+_7722825 0.25 AT2G17770.3
BZIP27
basic region/leucine zipper motif 27
Chr1_-_28897120 0.25 AT1G76930.2
EXT4
extensin 4
Chr3_+_9602005 0.25 AT3G26235.1
AT3G26235
hypothetical protein
Chr2_+_7723047 0.25 AT2G17770.1
AT2G17770.2
BZIP27
basic region/leucine zipper motif 27
Chr1_-_28896883 0.25 AT1G76930.1
EXT4
extensin 4
Chr3_-_7228797 0.25 AT3G20660.1
OCT4
organic cation/carnitine transporter4
Chr5_-_22547062 0.25 AT5G55670.1
AT5G55670
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr5_+_15561465 0.25 AT5G38870.1
AT5G38870

Chr4_+_5792137 0.25 AT4G09030.1
AGP10
arabinogalactan protein 10
Chr5_-_3626604 0.25 AT5G11360.3
AT5G11360.2
AT5G11360.1
AT5G11360
Interleukin-1 receptor-associated kinase 4 protein
Chr4_-_5648727 0.25 AT4G08870.2
AT4G08870.1
ARGAH2
Arginase/deacetylase superfamily protein
Chr1_-_958383 0.25 AT1G03800.1
ERF10
ERF domain protein 10
Chr1_+_23844954 0.24 AT1G64255.1
AT1G64255
MuDR family transposase
Chr3_-_16081906 0.24 AT3G44460.1
DPBF2
Basic-leucine zipper (bZIP) transcription factor family protein
Chr4_+_17263564 0.24 AT4G36600.2
AT4G36600.1
AT4G36600
Late embryogenesis abundant (LEA) protein
Chr4_-_14393381 0.24 AT4G29190.1
OZF2
Zinc finger C-x8-C-x5-C-x3-H type family protein
Chr5_-_1214439 0.24 AT5G04330.1
CYP84A4
Cytochrome P450 superfamily protein
Chr1_-_9331201 0.24 AT1G26921.1
AT1G26921
hypothetical protein
Chr2_-_12238973 0.24 AT2G28560.3
RAD51B
DNA repair (Rad51) family protein
Chr2_-_8690214 0.24 AT2G20120.2
COV1
CONTINUOUS VASCULAR RING protein (DUF502)
Chr3_+_21680027 0.24 AT3G58620.1
AT3G58620.2
TTL4
tetratricopetide-repeat thioredoxin-like 4
Chr4_-_10176638 0.24 AT4G18422.1
AT4G18422
transmembrane protein
Chr1_-_6138500 0.24 AT1G17830.1
AT1G17830
hypothetical protein (DUF789)
Chr3_+_10524181 0.24 AT3G28220.1
AT3G28220
TRAF-like family protein
Chr1_+_10625000 0.23 AT1G30200.1
AT1G30200.2
AT1G30200
F-box family protein
Chr4_-_172845 0.23 AT4G00390.1
AT4G00390
DNA-binding storekeeper protein-related transcriptional regulator
Chr5_-_763480 0.23 AT5G03210.2
DIP2
E3 ubiquitin-protein ligase
Chr2_-_8689535 0.23 AT2G20120.1
COV1
CONTINUOUS VASCULAR RING protein (DUF502)
Chr4_-_13022996 0.23 AT4G25490.1
CBF1
C-repeat/DRE binding factor 1
Chr5_+_98533 0.23 AT5G01240.2
LAX1
like AUXIN RESISTANT 1
Chr1_+_9067039 0.23 AT1G26210.1
SOFL1
SOB five-like 1
Chr4_-_11435284 0.23 AT4G21480.1
STP12
sugar transporter protein 12
Chr3_+_13581147 0.23 AT3G33055.1
AT3G33055

Chr2_+_10300032 0.23 AT2G24220.2
AT2G24220.1
PUP5
purine permease 5
Chr1_+_17525342 0.23 AT1G47655.1
AT1G47655
Dof-type zinc finger DNA-binding family protein
Chr1_-_4695723 0.23 AT1G13700.1
PGL1
6-phosphogluconolactonase 1
Chr5_+_6955190 0.23 AT5G20560.1
AT5G20560
Glycosyl hydrolase superfamily protein
Chr3_-_19643276 0.23 AT3G52970.1
AT3G52970.2
CYP76G1
cytochrome P450, family 76, subfamily G, polypeptide 1
Chr5_+_14020779 0.23 AT5G35870.1
AT5G35870
transmembrane protein
Chr4_+_11653234 0.23 AT4G21970.1
AT4G21970
senescence regulator (Protein of unknown function, DUF584)
Chr3_-_1499096 0.22 AT3G05260.1
AT3G05260
NAD(P)-binding Rossmann-fold superfamily protein
Chr3_+_18514266 0.22 AT3G49940.1
LBD38
LOB domain-containing protein 38
Chr2_-_12239124 0.22 AT2G28560.4
AT2G28560.2
AT2G28560.6
AT2G28560.5
AT2G28560.1
RAD51B
DNA repair (Rad51) family protein
Chr5_-_7047446 0.22 AT5G20820.1
AT5G20820
SAUR-like auxin-responsive protein family
Chr2_+_18591628 0.22 AT2G45080.1
cycp3%3B1
cyclin p3;1
Chr5_+_769438 0.22 AT5G03230.1
AT5G03230
senescence regulator (Protein of unknown function, DUF584)
Chr1_+_11488002 0.22 AT1G31990.1
AT1G31990
transmembrane protein
Chr5_+_97536 0.22 AT5G01240.1
LAX1
like AUXIN RESISTANT 1
Chr4_+_8448366 0.22 AT4G14730.1
AT4G14730
Bax inhibitor-1 family protein
Chr1_-_11239363 0.22 AT1G31370.1
AT1G31370
Ubiquitin-specific protease family C19-related protein
Chr2_-_14909863 0.22 AT2G35470.1
AT2G35470
ribosome maturation factor
Chr1_+_26906401 0.22 AT1G71390.2
AT1G71390.1
RLP11
receptor like protein 11
Chr2_+_18979399 0.22 AT2G46220.1
AT2G46220
DUF2358 family protein (DUF2358)
Chr5_-_17363678 0.22 AT5G43270.1
AT5G43270.3
SPL2
squamosa promoter binding protein-like 2
Chr5_-_8175431 0.22 AT5G24150.2
AT5G24150.1
SQP1
FAD/NAD(P)-binding oxidoreductase family protein
Chr2_-_13784471 0.22 AT2G32460.2
AT2G32460.1
MYB101
myb domain protein 101
Chr3_-_22426369 0.22 AT3G60670.1
AT3G60670
PLATZ transcription factor family protein
Chr3_-_20895634 0.22 AT3G56350.1
AT3G56350
Iron/manganese superoxide dismutase family protein
Chr4_+_15924349 0.22 AT4G33000.1
CBL10
calcineurin B-like protein 10
Chr2_-_7760839 0.22 AT2G17850.3
AT2G17850.1
AT2G17850.2
AT2G17850
Rhodanese/Cell cycle control phosphatase superfamily protein
Chr1_-_23469247 0.22 AT1G63260.4
AT1G63260.1
AT1G63260.2
AT1G63260.3
AT1G63260.5
AT1G63260.6
TET10
tetraspanin10
Chr5_-_17363880 0.22 AT5G43270.2
SPL2
squamosa promoter binding protein-like 2
Chr2_-_17569669 0.22 AT2G42140.1
AT2G42140
VQ motif-containing protein
Chr1_+_2884351 0.22 AT1G08980.1
AMI1
amidase 1
Chr3_-_18628888 0.22 AT3G50240.3
AT3G50240.2
AT3G50240.4
AT3G50240.1
KICP-02
ATP binding microtubule motor family protein
Chr2_-_7602121 0.21 AT2G17490.1
AT2G17490

Chr4_-_12725637 0.21 AT4G24660.2
HB22
homeobox protein 22
Chr2_+_497989 0.21 AT2G02061.2
AT2G02061.1
AT2G02061
Nucleotide-diphospho-sugar transferase family protein
Chr5_+_9578373 0.21 AT5G27220.1
AT5G27220.2
AT5G27220
Frigida-like protein
Chr1_+_18920658 0.21 AT1G51040.1
AT1G51040
Protein kinase superfamily protein
Chr5_-_4386386 0.21 AT5G13620.1
AT5G13620
hypothetical protein
Chr5_+_22090417 0.21 AT5G54400.1
AT5G54400
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_-_17038955 0.21 AT4G36000.1
AT4G36000.2
AT4G36000
Pathogenesis-related thaumatin superfamily protein
Chr1_-_8983314 0.21 AT1G25560.1
TEM1
AP2/B3 transcription factor family protein
Chr1_+_9189624 0.21 AT1G26590.4
AT1G26590
C2H2-like zinc finger protein
Chr5_+_21138703 0.21 AT5G52050.1
AT5G52050
MATE efflux family protein
Chr5_-_26933286 0.21 AT5G67480.1
AT5G67480.3
BT4
BTB and TAZ domain protein 4
Chr3_-_370484 0.21 AT3G02100.1
AT3G02100
UDP-Glycosyltransferase superfamily protein
Chr2_+_8303889 0.21 AT2G19146.1
AT2G19146
reverse transcriptase-like protein
Chr5_-_24317935 0.21 AT5G60460.2
AT5G60460
Preprotein translocase Sec, Sec61-beta subunit protein
Chr1_-_28991385 0.21 AT1G77145.2
AT1G77145.1
AT1G77145
transmembrane protein, putative (DUF506)
Chr3_+_23294382 0.21 AT3G63020.2
AT3G63020.1
AT3G63020
hypothetical protein (DUF3049)
Chr1_+_9189450 0.21 AT1G26590.3
AT1G26590
C2H2-like zinc finger protein
Chr5_+_1279577 0.20 AT5G04490.1
AT5G04490.2
VTE5
phytol kinase 1 VTE5
Chr1_+_20311619 0.20 AT1G54420.1
AT1G54420
hypothetical protein
Chr1_+_9189291 0.20 AT1G26590.1
AT1G26590
C2H2-like zinc finger protein
Chr1_-_8023516 0.20 AT1G22670.1
AT1G22670
Protease-associated (PA) RING/U-box zinc finger family protein
Chr3_+_4995941 0.20 AT3G14850.1
TBL41
TRICHOME BIREFRINGENCE-LIKE 41
Chr5_+_6340076 0.20 AT5G18990.1
AT5G18990
Pectin lyase-like superfamily protein
Chr5_+_10637834 0.20 AT5G28635.1
AT5G28635

Chr2_+_15104716 0.20 AT2G35950.2
AT2G35950.1
EDA12
embryo sac development arrest 12
Chr4_+_14221970 0.20 AT4G28800.1
AT4G28800
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_-_20023603 0.20 AT3G54070.1
AT3G54070
LOW protein: ankyrin repeat protein
Chr3_-_19782680 0.20 AT3G53350.2
AT3G53350.8
AT3G53350.9
AT3G53350.1
AT3G53350.6
RIP3
ROP interactive partner 4
Chr4_+_15924719 0.20 AT4G33000.2
AT4G33000.5
AT4G33000.4
AT4G33000.6
AT4G33000.3
CBL10
calcineurin B-like protein 10
Chr3_+_3470304 0.20 AT3G11080.1
AT3G11080.2
RLP35
receptor like protein 35
Chr1_+_22365799 0.20 AT1G60760.1
AT1G60760
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr4_+_13921292 0.20 AT4G27980.3
AT4G27980.2
AT4G27980
trichohyalin-like protein (DUF3444)
Chr2_-_1561743 0.20 AT2G04490.1
AT2G04490

Chr4_+_5631298 0.20 AT4G08840.1
PUM11
pumilio 11
Chr1_+_7439171 0.20 AT1G21250.1
WAK1
cell wall-associated kinase
Chr2_-_17472984 0.20 AT2G41870.1
AT2G41870
Remorin family protein
Chr4_+_8327626 0.20 AT4G14470.1
AT4G14470

Chr5_+_2399726 0.20 AT5G07580.1
AT5G07580
ethylene-responsive transcription factor
Chr5_+_3744698 0.20 AT5G11650.1
AT5G11650
alpha/beta-Hydrolases superfamily protein
Chr4_+_13921515 0.20 AT4G27980.1
AT4G27980
trichohyalin-like protein (DUF3444)
Chr3_-_5977727 0.20 AT3G17460.1
AT3G17460
PHD finger family protein
Chr2_-_17293749 0.20 AT2G41470.1
AT2G41470.2
AT2G41470
agamous-like MADS-box protein
Chr4_-_9227953 0.20 AT4G16330.2
AT4G16330.1
AT4G16330
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_-_10711667 0.20 AT1G30350.1
AT1G30350
Pectin lyase-like superfamily protein
Chr2_-_9932319 0.20 AT2G23330.1
AT2G23330

Chr3_-_824546 0.20 AT3G03460.1
AT3G03460
mediator of RNA polymerase II transcription subunit-like protein
Chr5_+_23780832 0.19 AT5G58890.1
AGL82
AGAMOUS-like 82
Chr4_-_375350 0.19 AT4G00890.1
AT4G00890
proline-rich family protein
Chr4_-_1385059 0.19 AT4G03115.6
AT4G03115
Mitochondrial substrate carrier family protein
Chr2_-_7029054 0.19 AT2G16210.2
AT2G16210.1
AT2G16210
Transcriptional factor B3 family protein
Chr3_-_1462917 0.19 AT3G05165.4
AT3G05165.1
AT3G05165.6
AT3G05165.3
AT3G05165.5
AT3G05165.2
AT3G05165
Major facilitator superfamily protein
Chr4_+_14221632 0.19 AT4G28800.2
AT4G28800
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr2_+_10294286 0.19 AT2G24210.1
TPS10
terpene synthase 10
Chr5_+_3744980 0.19 AT5G11650.2
AT5G11650
alpha/beta-Hydrolases superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G03150

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.5 GO:0006567 threonine catabolic process(GO:0006567)
0.1 0.7 GO:0051289 protein homotetramerization(GO:0051289)
0.1 0.4 GO:0015717 triose phosphate transport(GO:0015717) triose phosphate transmembrane transport(GO:0035436)
0.1 0.9 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.1 0.4 GO:0006557 S-adenosylmethioninamine biosynthetic process(GO:0006557) S-adenosylmethioninamine metabolic process(GO:0046499)
0.1 0.6 GO:0019310 inositol catabolic process(GO:0019310)
0.1 0.4 GO:0009831 plant-type cell wall modification involved in multidimensional cell growth(GO:0009831)
0.1 0.3 GO:0000050 urea cycle(GO:0000050)
0.1 0.2 GO:0042547 cell wall modification involved in multidimensional cell growth(GO:0042547)
0.1 0.3 GO:0033120 positive regulation of RNA splicing(GO:0033120) positive regulation of mRNA processing(GO:0050685)
0.1 1.1 GO:0015749 monosaccharide transport(GO:0015749)
0.1 0.3 GO:0010213 non-photoreactive DNA repair(GO:0010213)
0.1 0.3 GO:0015854 adenine transport(GO:0015853) guanine transport(GO:0015854)
0.1 0.5 GO:0043266 regulation of potassium ion transport(GO:0043266)
0.1 0.2 GO:0048832 specification of organ number(GO:0048832) specification of floral organ number(GO:0048833)
0.1 0.4 GO:0090356 negative regulation of auxin metabolic process(GO:0090356)
0.1 0.2 GO:0032491 detection of molecule of fungal origin(GO:0032491)
0.1 0.2 GO:0055089 fatty acid homeostasis(GO:0055089)
0.1 0.4 GO:0051571 positive regulation of histone H3-K4 methylation(GO:0051571)
0.1 0.5 GO:0010222 stem vascular tissue pattern formation(GO:0010222)
0.1 0.2 GO:0002215 defense response to nematode(GO:0002215)
0.1 0.2 GO:0060145 viral gene silencing in virus induced gene silencing(GO:0060145)
0.1 0.2 GO:1900459 positive regulation of brassinosteroid mediated signaling pathway(GO:1900459)
0.1 0.2 GO:0090603 sieve element differentiation(GO:0090603)
0.1 0.4 GO:0009061 anaerobic respiration(GO:0009061)
0.1 0.3 GO:0030322 stabilization of membrane potential(GO:0030322)
0.0 0.2 GO:0016099 monoterpenoid metabolic process(GO:0016098) monoterpenoid biosynthetic process(GO:0016099)
0.0 0.3 GO:0080117 secondary growth(GO:0080117)
0.0 1.0 GO:0016104 triterpenoid biosynthetic process(GO:0016104)
0.0 0.1 GO:2000029 regulation of proanthocyanidin biosynthetic process(GO:2000029)
0.0 0.4 GO:0009854 oxidative photosynthetic carbon pathway(GO:0009854)
0.0 0.2 GO:0002943 tRNA dihydrouridine synthesis(GO:0002943)
0.0 0.2 GO:0052746 inositol phosphorylation(GO:0052746)
0.0 0.2 GO:0048464 sepal development(GO:0048442) flower calyx development(GO:0048464)
0.0 0.1 GO:1902289 negative regulation of defense response to oomycetes(GO:1902289)
0.0 0.5 GO:0009051 pentose-phosphate shunt, oxidative branch(GO:0009051)
0.0 0.4 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
0.0 0.2 GO:0070898 RNA polymerase III transcriptional preinitiation complex assembly(GO:0070898)
0.0 0.1 GO:0031441 negative regulation of mRNA 3'-end processing(GO:0031441) negative regulation of mRNA processing(GO:0050686) negative regulation of mRNA polyadenylation(GO:1900364) negative regulation of mRNA metabolic process(GO:1903312)
0.0 0.1 GO:0043471 regulation of glycolytic process(GO:0006110) regulation of nucleotide catabolic process(GO:0030811) regulation of carbohydrate catabolic process(GO:0043470) regulation of cellular carbohydrate catabolic process(GO:0043471)
0.0 0.2 GO:0097298 regulation of nucleus size(GO:0097298)
0.0 0.4 GO:0071712 ER-associated misfolded protein catabolic process(GO:0071712)
0.0 0.2 GO:1990019 protein storage vacuole organization(GO:1990019)
0.0 0.3 GO:0010047 fruit dehiscence(GO:0010047)
0.0 0.2 GO:0048830 adventitious root development(GO:0048830)
0.0 0.7 GO:0030488 tRNA methylation(GO:0030488)
0.0 0.3 GO:0048587 regulation of short-day photoperiodism, flowering(GO:0048587)
0.0 0.3 GO:0046247 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.0 0.2 GO:0006307 DNA dealkylation involved in DNA repair(GO:0006307)
0.0 0.4 GO:0010077 maintenance of inflorescence meristem identity(GO:0010077)
0.0 0.4 GO:2000122 negative regulation of stomatal complex development(GO:2000122)
0.0 0.1 GO:0010254 nectary development(GO:0010254)
0.0 0.1 GO:0048657 anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
0.0 0.1 GO:0010321 regulation of vegetative phase change(GO:0010321)
0.0 0.1 GO:0090342 regulation of cell aging(GO:0090342)
0.0 0.7 GO:0010187 negative regulation of seed germination(GO:0010187)
0.0 0.1 GO:0051639 actin filament network formation(GO:0051639)
0.0 0.4 GO:0048829 root cap development(GO:0048829)
0.0 0.2 GO:0009954 proximal/distal pattern formation(GO:0009954)
0.0 0.2 GO:0010199 organ boundary specification between lateral organs and the meristem(GO:0010199)
0.0 0.2 GO:0009939 positive regulation of gibberellic acid mediated signaling pathway(GO:0009939)
0.0 0.2 GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning(GO:0060774)
0.0 0.2 GO:0042360 vitamin E biosynthetic process(GO:0010189) vitamin E metabolic process(GO:0042360)
0.0 0.3 GO:0052317 camalexin biosynthetic process(GO:0010120) camalexin metabolic process(GO:0052317)
0.0 0.1 GO:0046037 GMP biosynthetic process(GO:0006177) GMP metabolic process(GO:0046037)
0.0 0.1 GO:2001009 regulation of plant-type cell wall cellulose biosynthetic process(GO:2001009)
0.0 0.2 GO:0080086 stamen filament development(GO:0080086)
0.0 0.4 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.0 0.3 GO:0015743 malate transport(GO:0015743)
0.0 0.1 GO:1904276 regulation of wax biosynthetic process(GO:1904276) positive regulation of wax biosynthetic process(GO:1904278)
0.0 0.2 GO:0080183 response to photooxidative stress(GO:0080183)
0.0 0.6 GO:0009685 gibberellin metabolic process(GO:0009685) gibberellin biosynthetic process(GO:0009686)
0.0 0.2 GO:0048317 seed morphogenesis(GO:0048317)
0.0 0.2 GO:0006655 phosphatidylglycerol biosynthetic process(GO:0006655)
0.0 0.2 GO:0033619 membrane protein proteolysis(GO:0033619)
0.0 0.2 GO:0060359 response to ammonium ion(GO:0060359)
0.0 0.1 GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement(GO:1901527)
0.0 0.1 GO:0090116 C-5 methylation of cytosine(GO:0090116)
0.0 0.3 GO:0006863 purine nucleobase transport(GO:0006863)
0.0 0.1 GO:1900458 negative regulation of brassinosteroid mediated signaling pathway(GO:1900458)
0.0 0.1 GO:0080110 sporopollenin biosynthetic process(GO:0080110)
0.0 0.1 GO:0008216 spermidine metabolic process(GO:0008216)
0.0 0.0 GO:0016540 protein autoprocessing(GO:0016540)
0.0 0.2 GO:0007052 mitotic spindle organization(GO:0007052)
0.0 1.9 GO:0010200 response to chitin(GO:0010200)
0.0 0.4 GO:0099518 vesicle transport along actin filament(GO:0030050) vesicle cytoskeletal trafficking(GO:0099518)
0.0 0.2 GO:0030705 cytoskeleton-dependent intracellular transport(GO:0030705)
0.0 0.1 GO:0043486 histone exchange(GO:0043486)
0.0 0.1 GO:0006607 NLS-bearing protein import into nucleus(GO:0006607)
0.0 0.1 GO:0034052 positive regulation of plant-type hypersensitive response(GO:0034052)
0.0 0.1 GO:0098740 pollen tube adhesion(GO:0009865) cell-cell adhesion(GO:0098609) multi organism cell adhesion(GO:0098740)
0.0 0.1 GO:0035435 phosphate ion transmembrane transport(GO:0035435)
0.0 0.1 GO:0043247 telomere maintenance in response to DNA damage(GO:0043247)
0.0 0.5 GO:0010311 lateral root formation(GO:0010311)
0.0 0.2 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.0 0.1 GO:0001709 cell fate determination(GO:0001709)
0.0 0.1 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.0 0.1 GO:0010048 vernalization response(GO:0010048)
0.0 0.1 GO:0033386 geranylgeranyl diphosphate metabolic process(GO:0033385) geranylgeranyl diphosphate biosynthetic process(GO:0033386)
0.0 0.2 GO:0001678 cellular glucose homeostasis(GO:0001678)
0.0 0.1 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.0 0.1 GO:0080187 floral organ senescence(GO:0080187)
0.0 0.0 GO:0080140 regulation of jasmonic acid metabolic process(GO:0080140) regulation of jasmonic acid biosynthetic process(GO:0080141)
0.0 0.3 GO:0009825 multidimensional cell growth(GO:0009825)
0.0 0.8 GO:0009873 ethylene-activated signaling pathway(GO:0009873)
0.0 0.1 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.0 0.2 GO:0006102 isocitrate metabolic process(GO:0006102)
0.0 0.0 GO:0046825 regulation of protein export from nucleus(GO:0046825)
0.0 0.1 GO:0007095 mitotic G2 DNA damage checkpoint(GO:0007095) G2 DNA damage checkpoint(GO:0031572)
0.0 0.1 GO:0005992 trehalose biosynthetic process(GO:0005992)
0.0 0.3 GO:0050826 response to freezing(GO:0050826)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063)
0.1 0.4 GO:0031205 endoplasmic reticulum Sec complex(GO:0031205)
0.1 0.2 GO:0031515 tRNA (m1A) methyltransferase complex(GO:0031515)
0.1 0.2 GO:0005652 nuclear lamina(GO:0005652)
0.0 0.2 GO:0000126 transcription factor TFIIIB complex(GO:0000126)
0.0 0.3 GO:0005677 chromatin silencing complex(GO:0005677)
0.0 0.2 GO:0044545 NSL complex(GO:0044545)
0.0 0.2 GO:0009360 DNA polymerase III complex(GO:0009360)
0.0 0.1 GO:0000812 Swr1 complex(GO:0000812)
0.0 0.2 GO:0030139 endocytic vesicle(GO:0030139)
0.0 0.1 GO:0032432 actin filament bundle(GO:0032432)
0.0 0.1 GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing)(GO:0009330)
0.0 0.4 GO:0072686 mitotic spindle(GO:0072686)
0.0 1.0 GO:0005811 lipid particle(GO:0005811)
0.0 0.1 GO:0030870 Mre11 complex(GO:0030870)
0.0 0.1 GO:0016593 Cdc73/Paf1 complex(GO:0016593)
0.0 0.3 GO:0016459 myosin complex(GO:0016459)
0.0 0.1 GO:0030906 retromer, cargo-selective complex(GO:0030906)
0.0 0.2 GO:0071556 integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) lumenal side of membrane(GO:0098576)
0.0 0.2 GO:0000109 nucleotide-excision repair complex(GO:0000109)
0.0 0.1 GO:0016272 prefoldin complex(GO:0016272)
0.0 1.4 GO:0009705 plant-type vacuole membrane(GO:0009705)
0.0 0.1 GO:0000445 transcription export complex(GO:0000346) THO complex part of transcription export complex(GO:0000445)
0.0 0.1 GO:0017119 Golgi transport complex(GO:0017119)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.5 GO:0004793 threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732)
0.2 1.0 GO:0018708 thiol S-methyltransferase activity(GO:0018708)
0.1 0.4 GO:0015152 hexose phosphate transmembrane transporter activity(GO:0015119) glucose-6-phosphate transmembrane transporter activity(GO:0015152)
0.1 0.4 GO:0004014 adenosylmethionine decarboxylase activity(GO:0004014)
0.1 0.6 GO:0050113 inositol oxygenase activity(GO:0050113)
0.1 0.3 GO:0051752 phosphoglucan, water dikinase activity(GO:0051752)
0.1 0.5 GO:0000150 recombinase activity(GO:0000150)
0.1 0.5 GO:0017057 6-phosphogluconolactonase activity(GO:0017057)
0.1 0.5 GO:0004123 cystathionine gamma-lyase activity(GO:0004123)
0.1 0.4 GO:0017108 5'-flap endonuclease activity(GO:0017108)
0.1 1.1 GO:0015145 monosaccharide transmembrane transporter activity(GO:0015145)
0.1 0.5 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.1 0.2 GO:0016429 tRNA (adenine-N1-)-methyltransferase activity(GO:0016429)
0.1 0.4 GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0003830)
0.1 0.2 GO:0032131 alkylated DNA binding(GO:0032131)
0.1 0.2 GO:0001016 polymerase III regulatory region sequence-specific DNA binding(GO:0000992) RNA polymerase III type 3 promoter sequence-specific DNA binding(GO:0001006) RNA polymerase III regulatory region DNA binding(GO:0001016) RNA polymerase III type 3 promoter DNA binding(GO:0001032)
0.1 0.3 GO:0022842 leak channel activity(GO:0022840) potassium ion leak channel activity(GO:0022841) narrow pore channel activity(GO:0022842)
0.0 1.0 GO:0042300 beta-amyrin synthase activity(GO:0042300)
0.0 0.2 GO:0002151 G-quadruplex RNA binding(GO:0002151)
0.0 0.3 GO:0052853 very-long-chain-(S)-2-hydroxy-acid oxidase activity(GO:0052852) long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity(GO:0052853) medium-chain-(S)-2-hydroxy-acid oxidase activity(GO:0052854)
0.0 0.2 GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives(GO:0016856)
0.0 0.3 GO:0005350 pyrimidine nucleobase transmembrane transporter activity(GO:0005350) uracil transmembrane transporter activity(GO:0015210)
0.0 0.2 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.0 0.4 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.0 0.2 GO:0046577 long-chain-alcohol oxidase activity(GO:0046577)
0.0 0.1 GO:1990269 phosphoserine binding(GO:0050815) RNA polymerase II C-terminal domain phosphoserine binding(GO:1990269)
0.0 0.3 GO:0010436 carotenoid dioxygenase activity(GO:0010436)
0.0 0.2 GO:0045544 gibberellin 20-oxidase activity(GO:0045544)
0.0 0.6 GO:0005199 structural constituent of cell wall(GO:0005199)
0.0 0.7 GO:0015174 basic amino acid transmembrane transporter activity(GO:0015174)
0.0 0.4 GO:0008175 tRNA methyltransferase activity(GO:0008175)
0.0 0.2 GO:0017150 tRNA dihydrouridine synthase activity(GO:0017150)
0.0 0.1 GO:0019156 isoamylase activity(GO:0019156)
0.0 0.2 GO:0050551 myrcene synthase activity(GO:0050551)
0.0 0.3 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.0 0.2 GO:0004449 isocitrate dehydrogenase (NAD+) activity(GO:0004449)
0.0 0.3 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 0.2 GO:0047372 acylglycerol lipase activity(GO:0047372)
0.0 0.1 GO:0010331 gibberellin binding(GO:0010331)
0.0 0.1 GO:0004605 phosphatidate cytidylyltransferase activity(GO:0004605)
0.0 0.1 GO:0070182 DNA polymerase binding(GO:0070182)
0.0 0.2 GO:0004784 superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721)
0.0 0.2 GO:0005536 glucose binding(GO:0005536) mannokinase activity(GO:0019158)
0.0 0.5 GO:0004565 beta-galactosidase activity(GO:0004565)
0.0 0.3 GO:0004708 MAP kinase kinase activity(GO:0004708) kinase activator activity(GO:0019209) protein kinase activator activity(GO:0030295)
0.0 0.4 GO:0043295 glutathione binding(GO:0043295) oligopeptide binding(GO:1900750)
0.0 0.5 GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 0.1 GO:0018685 alkane 1-monooxygenase activity(GO:0018685)
0.0 0.7 GO:0044390 ubiquitin-like protein conjugating enzyme binding(GO:0044390)
0.0 0.2 GO:0042500 aspartic endopeptidase activity, intramembrane cleaving(GO:0042500)
0.0 0.2 GO:0008169 C-methyltransferase activity(GO:0008169)
0.0 0.2 GO:0016723 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.0 0.3 GO:0008308 voltage-gated anion channel activity(GO:0008308)
0.0 0.1 GO:1904680 oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680)
0.0 0.1 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.0 0.0 GO:0008798 beta-aspartyl-peptidase activity(GO:0008798)
0.0 0.4 GO:0030898 microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898)
0.0 0.3 GO:0005345 purine nucleobase transmembrane transporter activity(GO:0005345)
0.0 0.1 GO:0052623 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.0 0.2 GO:0003689 DNA clamp loader activity(GO:0003689) protein-DNA loading ATPase activity(GO:0033170)
0.0 0.0 GO:0004609 phosphatidylserine decarboxylase activity(GO:0004609)
0.0 0.1 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.0 0.1 GO:0010285 L,L-diaminopimelate aminotransferase activity(GO:0010285)
0.0 0.2 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.0 0.1 GO:0004430 1-phosphatidylinositol 4-kinase activity(GO:0004430)
0.0 0.4 GO:0051087 chaperone binding(GO:0051087)
0.0 0.0 GO:0016618 hydroxypyruvate reductase activity(GO:0016618)
0.0 0.2 GO:0008143 poly(A) binding(GO:0008143)
0.0 0.1 GO:0004805 trehalose-phosphatase activity(GO:0004805)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 PID ARF 3PATHWAY Arf1 pathway
0.0 0.0 PID MYC PATHWAY C-MYC pathway
0.0 0.1 PID AP1 PATHWAY AP-1 transcription factor network
0.0 0.1 PID P53 REGULATION PATHWAY p53 pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION Genes involved in Amino acid synthesis and interconversion (transamination)
0.0 0.1 REACTOME COPI MEDIATED TRANSPORT Genes involved in COPI Mediated Transport
0.0 0.1 REACTOME G2 M DNA DAMAGE CHECKPOINT Genes involved in G2/M DNA damage checkpoint
0.0 0.5 REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION Genes involved in Factors involved in megakaryocyte development and platelet production
0.0 0.1 REACTOME METABOLISM OF NUCLEOTIDES Genes involved in Metabolism of nucleotides