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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G02460
Z-value: 0.85
Transcription factors associated with AT5G02460
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G02460
|
AT5G02460 | Dof-type zinc finger DNA-binding family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G02460 | arTal_v1_Chr5_-_541316_541316 | -0.21 | 4.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_27569823_27569823 Show fit | 1.49 |
AT1G73330.1
|
drought-repressed 4 |
|
| arTal_v1_Chr5_+_9200271_9200271 Show fit | 1.44 |
AT5G26260.1
|
TRAF-like family protein |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 1.43 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 1.39 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 1.34 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr4_-_14827211_14827211 Show fit | 1.31 |
AT4G30280.1
|
xyloglucan endotransglucosylase/hydrolase 18 |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 1.27 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 1.21 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr5_-_15135169_15135169 Show fit | 1.18 |
AT5G37990.1
|
S-adenosyl-L-methionine-dependent methyltransferase superfamily protein |
|
| arTal_v1_Chr5_+_1119937_1119937 Show fit | 1.17 |
AT5G04120.1
|
Phosphoglycerate mutase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G02460
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 15.1 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 7.2 | GO:0010410 | hemicellulose metabolic process(GO:0010410) |
| 0.2 | 4.5 | GO:0030091 | protein repair(GO:0030091) |
| 0.0 | 3.8 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.0 | 3.4 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.3 | 3.3 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.8 | 3.1 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.1 | 2.8 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.4 | 2.2 | GO:0009759 | indole glucosinolate biosynthetic process(GO:0009759) |
| 0.2 | 2.1 | GO:0010466 | negative regulation of peptidase activity(GO:0010466) regulation of peptidase activity(GO:0052547) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 46.8 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 16.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 3.8 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 3.0 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 2.3 | GO:0005615 | extracellular space(GO:0005615) |
| 0.0 | 1.9 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 1.4 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 1.2 | GO:0048226 | Casparian strip(GO:0048226) |
| 0.2 | 1.1 | GO:0035061 | interchromatin granule(GO:0035061) |
| 0.0 | 0.9 | GO:0005811 | lipid particle(GO:0005811) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 4.6 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.1 | 4.2 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.0 | 3.7 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.0 | 3.6 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.2 | 3.3 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.1 | 2.9 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.1 | 2.5 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.1 | 2.4 | GO:0030414 | peptidase inhibitor activity(GO:0030414) |
| 0.1 | 2.4 | GO:0033293 | monocarboxylic acid binding(GO:0033293) |
| 0.0 | 2.4 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 3.2 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.3 | 1.0 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.2 | 0.9 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.3 | 0.8 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.1 | 0.8 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 0.4 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.3 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.0 | 0.3 | PID P73PATHWAY | p73 transcription factor network |
| 0.1 | 0.2 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
| 0.0 | 0.2 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 3.5 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.2 | 0.7 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.6 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.1 | 0.6 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.0 | 0.6 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
| 0.1 | 0.5 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.1 | 0.4 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.1 | 0.4 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.0 | 0.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.3 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |