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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G02320
Z-value: 1.43
Transcription factors associated with AT5G02320
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G02320
|
AT5G02320 | myb domain protein 3r-5 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB3R-5 | arTal_v1_Chr5_-_485664_485664 | -0.08 | 8.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_19040456_19040456 Show fit | 1.44 |
AT5G46900.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_+_4408925_4408925 Show fit | 1.43 |
AT3G13520.1
|
arabinogalactan protein 12 |
|
| arTal_v1_Chr5_+_22721373_22721373 Show fit | 1.41 |
AT5G56120.1
|
RNA polymerase II elongation factor |
|
| arTal_v1_Chr5_+_8033665_8033738 Show fit | 1.35 |
AT5G23830.1
AT5G23830.2 |
MD-2-related lipid recognition domain-containing protein |
|
| arTal_v1_Chr3_+_9409160_9409160 Show fit | 1.34 |
AT3G25780.1
|
allene oxide cyclase 3 |
|
| arTal_v1_Chr3_-_565801_565801 Show fit | 1.32 |
AT3G02640.1
|
transmembrane protein |
|
| arTal_v1_Chr5_-_8647817_8647817 Show fit | 1.32 |
AT5G25090.1
|
early nodulin-like protein 13 |
|
| arTal_v1_Chr5_-_5310951_5310951 Show fit | 1.26 |
AT5G16250.1
|
transmembrane protein |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 1.25 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr3_-_10590685_10590685 Show fit | 1.25 |
AT3G28340.1
|
galacturonosyltransferase-like 10 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G02320
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.6 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 2.9 | GO:0015865 | purine nucleotide transport(GO:0015865) |
| 0.6 | 2.8 | GO:0046218 | tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218) |
| 0.1 | 2.3 | GO:0000038 | very long-chain fatty acid metabolic process(GO:0000038) |
| 0.5 | 2.2 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.2 | 2.0 | GO:1904668 | positive regulation of ubiquitin protein ligase activity(GO:1904668) |
| 0.0 | 2.0 | GO:0010200 | response to chitin(GO:0010200) |
| 0.5 | 1.9 | GO:0006097 | glyoxylate cycle(GO:0006097) |
| 0.2 | 1.8 | GO:0071174 | mitotic spindle assembly checkpoint(GO:0007094) spindle checkpoint(GO:0031577) negative regulation of proteasomal ubiquitin-dependent protein catabolic process(GO:0032435) negative regulation of sister chromatid segregation(GO:0033046) negative regulation of mitotic sister chromatid segregation(GO:0033048) negative regulation of mitotic metaphase/anaphase transition(GO:0045841) negative regulation of chromosome segregation(GO:0051985) spindle assembly checkpoint(GO:0071173) mitotic spindle checkpoint(GO:0071174) negative regulation of proteasomal protein catabolic process(GO:1901799) negative regulation of metaphase/anaphase transition of cell cycle(GO:1902100) negative regulation of proteolysis involved in cellular protein catabolic process(GO:1903051) negative regulation of cellular protein catabolic process(GO:1903363) negative regulation of mitotic sister chromatid separation(GO:2000816) |
| 0.2 | 1.8 | GO:0051131 | chaperone-mediated protein complex assembly(GO:0051131) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.1 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 7.1 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 6.0 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 3.1 | GO:0048046 | apoplast(GO:0048046) |
| 0.4 | 2.0 | GO:0033597 | mitotic checkpoint complex(GO:0033597) |
| 0.3 | 1.8 | GO:0005828 | kinetochore microtubule(GO:0005828) |
| 0.0 | 1.7 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.0 | 1.6 | GO:0009524 | phragmoplast(GO:0009524) |
| 0.0 | 1.6 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.4 | 1.5 | GO:0032133 | chromosome passenger complex(GO:0032133) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.5 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.0 | 3.9 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.0 | 3.8 | GO:0003924 | GTPase activity(GO:0003924) |
| 0.0 | 3.1 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.3 | 2.9 | GO:0005471 | ATP:ADP antiporter activity(GO:0005471) |
| 0.1 | 2.8 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.0 | 2.4 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.0 | 2.3 | GO:0016759 | cellulose synthase activity(GO:0016759) |
| 0.0 | 2.2 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.2 | 2.0 | GO:1990757 | ubiquitin ligase activator activity(GO:1990757) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.0 | 0.4 | PID ATR PATHWAY | ATR signaling pathway |
| 0.1 | 0.3 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.0 | 0.2 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.0 | 0.2 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.0 | 0.1 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.4 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
| 0.1 | 0.2 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.0 | 0.2 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
| 0.0 | 0.1 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |