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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT4G38170

Z-value: 3.65

Transcription factors associated with AT4G38170

Gene Symbol Gene ID Gene Info
AT4G38170
AT4G38170 FAR1-related sequence 9

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
FRS9arTal_v1_Chr4_+_17904532_179045320.583.1e-02Click!

Activity profile of AT4G38170 motif

Sorted Z-values of AT4G38170 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr5_-_17199793 7.73 AT5G42900.1
AT5G42900.3
AT5G42900.2
COR27
cold regulated protein 27
Chr1_+_209208 5.40 AT1G01580.1
FRO2
ferric reduction oxidase 2
Chr1_+_208995 5.39 AT1G01580.2
FRO2
ferric reduction oxidase 2
Chr1_-_22280593 4.15 AT1G60470.1
GolS4
galactinol synthase 4
Chr2_-_12415661 4.13 AT2G28900.1
OEP16-1
outer plastid envelope protein 16-1
Chr5_-_7054281 4.11 AT5G20830.3
SUS1
sucrose synthase 1
Chr5_-_7054713 4.04 AT5G20830.1
SUS1
sucrose synthase 1
Chr5_-_7055398 3.95 AT5G20830.2
SUS1
sucrose synthase 1
Chr5_-_22115539 3.94 AT5G54470.1
BBX29
B-box type zinc finger family protein
Chr4_-_13001948 3.74 AT4G25433.1
AT4G25433
peptidoglycan-binding LysM domain-containing protein
Chr3_-_10599042 3.73 AT3G28345.1
ABCB15
ABC transporter family protein
Chr4_-_9607402 3.54 AT4G17090.1
CT-BMY
chloroplast beta-amylase
Chr4_-_12345652 3.51 AT4G23700.2
CHX17
cation/H+ exchanger 17
Chr4_-_12346051 3.49 AT4G23700.1
CHX17
cation/H+ exchanger 17
Chr2_-_827994 3.47 AT2G02850.1
ARPN
plantacyanin
Chr4_+_9865103 3.43 AT4G17730.2
AT4G17730.1
SYP23
syntaxin of plants 23
Chr1_+_4056165 3.41 AT1G12010.1
AT1G12010
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr2_-_4007044 3.38 AT2G10410.1
SADHU1-1

Chr2_+_19232607 3.36 AT2G46790.3
AT2G46790.4
AT2G46790.1
AT2G46790.2
AT2G46790.5
PRR9
pseudo-response regulator 9
Chr4_-_407142 3.35 AT4G00950.1
MEE47
hypothetical protein (DUF688)
Chr1_-_40945 3.24 AT1G01070.2
AT1G01070.1
UMAMIT28
nodulin MtN21 /EamA-like transporter family protein
Chr3_+_2946239 3.22 AT3G09600.1
AT3G09600.2
AT3G09600.4
AT3G09600.3
AT3G09600.7
AT3G09600.6
AT3G09600.5
AT3G09600.8
AT3G09600.9
RVE8
Homeodomain-like superfamily protein
Chr2_+_13987669 3.21 AT2G32960.1
PFA-DSP2
Phosphotyrosine protein phosphatases superfamily protein
Chr2_-_15599951 3.13 AT2G37130.2
AT2G37130
Peroxidase superfamily protein
Chr3_+_11810726 3.08 AT3G30180.1
BR6OX2
brassinosteroid-6-oxidase 2
Chr2_-_15600154 3.06 AT2G37130.1
AT2G37130
Peroxidase superfamily protein
Chr4_+_994726 3.05 AT4G02280.1
SUS3
sucrose synthase 3
Chr5_+_2563366 3.03 AT5G08000.1
AT5G08000.2
E13L3
glucan endo-1,3-beta-glucosidase-like protein 3
Chr3_-_19078955 2.99 AT3G51400.1
AT3G51400
hypothetical protein (DUF241)
Chr3_+_9475350 2.97 AT3G25890.2
AT3G25890.1
CRF11
Integrase-type DNA-binding superfamily protein
Chr5_+_26416126 2.92 AT5G66052.1
AT5G66052
transmembrane protein
Chr1_-_23511997 2.88 AT1G63410.2
AT1G63410.1
AT1G63410.3
AT1G63410
LURP-one-like protein (DUF567)
Chr5_-_17337884 2.87 AT5G43180.1
AT5G43180
transmembrane protein, putative (Protein of unknown function, DUF599)
Chr1_+_28829243 2.78 AT1G76800.1
AT1G76800
Vacuolar iron transporter (VIT) family protein
Chr3_+_4403355 2.76 AT3G13510.1
AT3G13510
carboxyl-terminal peptidase, putative (DUF239)
Chr1_-_20804574 2.69 AT1G55675.1
AT1G55675
transmembrane protein
Chr2_-_6880898 2.67 AT2G15790.1
SQN
peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase
Chr4_-_9779939 2.67 AT4G17550.1
G3Pp4
Major facilitator superfamily protein
Chr5_-_7654835 2.66 AT5G22890.1
AT5G22890
C2H2 and C2HC zinc fingers superfamily protein
Chr1_-_21580766 2.64 AT1G58235.1
AT1G58235
hypothetical protein
Chr5_-_900298 2.63 AT5G03555.1
NCS1
permease, cytosine/purines, uracil, thiamine, allantoin family protein
Chr5_+_10632241 2.62 AT5G28626.1
SADHU1-3

Chr3_-_10790553 2.61 AT3G28740.1
CYP81D11
Cytochrome P450 superfamily protein
Chr1_-_21581165 2.59 AT1G58235.2
AT1G58235
hypothetical protein
Chr3_-_20939631 2.55 AT3G56480.1
AT3G56480
myosin heavy chain-like protein
Chr1_+_7404328 2.54 AT1G21140.1
AT1G21140
Vacuolar iron transporter (VIT) family protein
Chr1_+_846664 2.54 AT1G03420.1
Sadhu4-2

Chr5_-_21291928 2.51 AT5G52450.1
AT5G52450
MATE efflux family protein
Chr1_-_29034822 2.50 AT1G77280.2
AT1G77280.1
AT1G77280
kinase with adenine nucleotide alpha hydrolases-like domain-containing protein
Chr4_-_14117367 2.48 AT4G28560.1
RIC7
ROP-interactive CRIB motif-containing protein 7
Chr1_-_11595982 2.47 AT1G32190.2
AT1G32190.1
AT1G32190
alpha/beta-Hydrolases superfamily protein
Chr4_-_2992618 2.46 AT4G05631.1
AT4G05631
hypothetical protein
Chr2_-_521707 2.46 AT2G02080.4
AT2G02080.2
AT2G02080.5
AT2G02080.6
AT2G02080.3
AT2G02080.1
IDD4
indeterminate(ID)-domain 4
Chr1_+_11181504 2.43 AT1G31280.1
AGO2
Argonaute family protein
Chr1_-_18360426 2.42 AT1G49600.2
AT1G49600.1
AT1G49600.3
RBP47A
RNA-binding protein 47A
Chr4_+_16136749 2.42 AT4G33565.1
AT4G33565
RING/U-box superfamily protein
Chr5_-_18547205 2.40 AT5G45720.2
AT5G45720.1
AT5G45720
AAA-type ATPase family protein
Chr5_-_4639835 2.38 AT5G14390.1
AT5G14390
alpha/beta-Hydrolases superfamily protein
Chr2_+_8183638 2.36 AT2G18890.1
AT2G18890.3
AT2G18890
Protein kinase superfamily protein
Chr1_-_4398193 2.36 AT1G12920.1
ERF1-2
eukaryotic release factor 1-2
Chr1_+_5638779 2.35 AT1G16500.1
AT1G16500
filamentous hemagglutinin transporter
Chr1_-_5194214 2.33 AT1G15100.1
RHA2A
RING-H2 finger A2A
Chr4_-_7992429 2.33 AT4G13770.1
CYP83A1
cytochrome P450, family 83, subfamily A, polypeptide 1
Chr5_+_18444607 2.30 AT5G45510.2
AT5G45510.1
AT5G45510
Leucine-rich repeat (LRR) family protein
Chr4_+_5244865 2.30 AT4G08300.1
UMAMIT17
nodulin MtN21 /EamA-like transporter family protein
Chr5_+_648648 2.26 AT5G02840.3
AT5G02840.1
AT5G02840.5
AT5G02840.2
AT5G02840.4
LCL1
LHY/CCA1-like 1
Chr3_+_5047376 2.25 AT3G14990.1
AT3G14990.3
DJ1A
Class I glutamine amidotransferase-like superfamily protein
Chr3_+_5047589 2.24 AT3G14990.2
DJ1A
Class I glutamine amidotransferase-like superfamily protein
Chr1_+_20273567 2.22 AT1G54310.2
AT1G54310.1
AT1G54310
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr2_-_15955752 2.22 AT2G38110.1
GPAT6
glycerol-3-phosphate acyltransferase 6
Chr3_-_21996840 2.22 AT3G59540.1
AT3G59540
Ribosomal L38e protein family
Chr2_-_16757599 2.19 AT2G40120.1
AT2G40120
Protein kinase superfamily protein
Chr2_-_6175064 2.19 AT2G14510.1
AT2G14510.2
AT2G14510
Leucine-rich repeat protein kinase family protein
Chr1_-_6904155 2.18 AT1G19880.1
AT1G19880
Regulator of chromosome condensation (RCC1) family protein
Chr1_-_22871298 2.17 AT1G61890.3
AT1G61890.1
AT1G61890.2
AT1G61890
MATE efflux family protein
Chr1_+_23833485 2.15 AT1G64230.1
AT1G64230.3
AT1G64230.5
AT1G64230.4
AT1G64230.2
UBC28
ubiquitin-conjugating enzyme 28
Chr3_+_1795145 2.14 AT3G05980.1
AT3G05980
hypothetical protein
Chr5_-_18021508 2.09 AT5G44670.1
GALS2
glycosyltransferase family protein (DUF23)
Chr4_+_2804403 2.04 AT4G05520.1
AT4G05520.2
EHD2
EPS15 homology domain 2
Chr3_-_2394550 2.02 AT3G07510.2
AT3G07510.3
AT3G07510.1
AT3G07510
maternal effect embryo arrest protein
Chr5_+_25400317 2.01 AT5G63420.1
emb2746
RNA-metabolising metallo-beta-lactamase family protein
Chr5_-_14256284 2.01 AT5G36220.2
AT5G36220.1
CYP81D1
cytochrome p450 81d1
Chr1_-_30376065 2.00 AT1G80830.1
AT1G80830.2
NRAMP1
natural resistance-associated macrophage protein 1
Chr3_-_20376522 2.00 AT3G54990.1
AT3G54990.2
SMZ
Integrase-type DNA-binding superfamily protein
Chr2_-_12785037 2.00 AT2G29980.2
FAD3
fatty acid desaturase 3
Chr1_-_4020765 1.99 AT1G11910.2
APA1
aspartic proteinase A1
Chr2_-_12785190 1.99 AT2G29980.1
FAD3
fatty acid desaturase 3
Chr5_+_24674963 1.99 AT5G61380.1
TOC1
CCT motif -containing response regulator protein
Chr1_-_4021043 1.99 AT1G11910.1
APA1
aspartic proteinase A1
Chr1_+_18132545 1.98 AT1G49010.1
AT1G49010
Duplicated homeodomain-like superfamily protein
Chr5_+_9835884 1.98 AT5G27770.1
AT5G27770
Ribosomal L22e protein family
Chr1_-_10473502 1.98 AT1G29910.1
CAB3
chlorophyll A/B binding protein 3
Chr5_-_740319 1.97 AT5G03140.1
AT5G03140
Concanavalin A-like lectin protein kinase family protein
Chr1_-_29005281 1.97 AT1G77200.1
AT1G77200
Integrase-type DNA-binding superfamily protein
Chr5_-_21421715 1.97 AT5G52860.1
ABCG8
ABC-2 type transporter family protein
Chr2_+_8183879 1.96 AT2G18890.2
AT2G18890
Protein kinase superfamily protein
Chr5_-_4733225 1.96 AT5G14680.1
AT5G14680
Adenine nucleotide alpha hydrolases-like superfamily protein
Chr1_+_14158452 1.95 AT1G37130.1
NIA2
nitrate reductase 2
Chr2_+_100484 1.95 AT2G01150.2
AT2G01150.3
AT2G01150.1
RHA2B
RING-H2 finger protein 2B
Chr2_+_17226948 1.95 AT2G41330.1
AT2G41330
Glutaredoxin family protein
Chr4_-_5151159 1.93 AT4G08150.1
KNAT1
homeobox knotted-like protein
Chr1_+_9996713 1.92 AT1G28440.1
HSL1
HAESA-like 1
Chr5_-_16760576 1.90 AT5G41870.1
AT5G41870
Pectin lyase-like superfamily protein
Chr1_-_8855874 1.90 AT1G25260.1
AT1G25260
Ribosomal protein L10 family protein
Chr4_-_17530589 1.90 AT4G37250.1
AT4G37250
Leucine-rich repeat protein kinase family protein
Chr1_-_26076374 1.89 AT1G69360.1
AT1G69360
T-box transcription factor, putative (DUF863)
Chr1_+_6002888 1.88 AT1G17470.1
AT1G17470.2
DRG1
developmentally regulated G-protein 1
Chr5_-_17245988 1.88 AT5G42990.1
UBC18
ubiquitin-conjugating enzyme 18
Chr3_+_9295175 1.87 AT3G25585.5
AT3G25585.1
AT3G25585.3
AT3G25585.4
AT3G25585.2
AAPT2
aminoalcoholphosphotransferase
Chr3_+_18262290 1.87 AT3G49260.1
AT3G49260.3
AT3G49260.2
AT3G49260.4
iqd21
IQ-domain 21
Chr4_+_8860462 1.87 AT4G15510.3
AT4G15510.1
AT4G15510.4
AT4G15510.5
AT4G15510.2
PPD1
Photosystem II reaction center PsbP family protein
Chr3_-_4042075 1.86 AT3G12710.1
AT3G12710
DNA glycosylase superfamily protein
Chr1_-_5789312 1.85 AT1G16920.1
RABA1b
RAB GTPase homolog A1B
Chr5_+_2317126 1.84 AT5G07340.1
AT5G07340.2
AT5G07340
Calreticulin family protein
Chr3_+_5447272 1.84 AT3G16060.1
AT3G16060
ATP binding microtubule motor family protein
Chr2_-_18620451 1.83 AT2G45160.1
HAM1
GRAS family transcription factor
Chr2_+_11818696 1.83 AT2G27720.2
AT2G27720.3
AT2G27720
60S acidic ribosomal protein family
Chr1_+_11552426 1.82 AT1G32120.1
AT1G32120
serine/threonine-protein phosphatase 7 long form-like protein
Chr3_-_623739 1.81 AT3G02850.1
AT3G02850.2
SKOR
STELAR K+ outward rectifier
Chr3_+_20344785 1.81 AT3G54920.1
PMR6
Pectin lyase-like superfamily protein
Chr1_+_18215800 1.80 AT1G49240.1
ACT8
actin 8
Chr3_-_10030087 1.80 AT3G27180.1
AT3G27180
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_-_8807460 1.80 AT3G24300.1
AMT1%3B3
ammonium transporter 1;3
Chr1_-_10184512 1.80 AT1G29160.1
AT1G29160
Dof-type zinc finger DNA-binding family protein
Chr2_-_8475153 1.80 AT2G19580.1
TET2
tetraspanin2
Chr4_-_10291058 1.80 AT4G18700.1
CIPK12
CBL-interacting protein kinase 12
Chr3_+_17558793 1.79 AT3G47620.1
TCP14
TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Chr2_+_11818230 1.79 AT2G27720.1
AT2G27720
60S acidic ribosomal protein family
Chr2_+_11818404 1.79 AT2G27720.4
AT2G27720
60S acidic ribosomal protein family
Chr1_-_22649521 1.78 AT1G61380.1
SD1-29
S-domain-1 29
Chr1_-_2586804 1.78 AT1G08230.3
AT1G08230.6
AT1G08230.5
AT1G08230.2
AT1G08230.4
AT1G08230
Transmembrane amino acid transporter family protein
Chr4_-_17123855 1.78 AT4G36180.1
AT4G36180
Leucine-rich receptor-like protein kinase family protein
Chr4_-_13112482 1.76 AT4G25750.1
ABCG4
ABC-2 type transporter family protein
Chr2_-_12935773 1.76 AT2G30350.1
AT2G30350.2
AT2G30350
Excinuclease ABC, C subunit, N-terminal
Chr1_+_21652988 1.76 AT1G58340.1
ZF14
MATE efflux family protein
Chr2_+_8125128 1.76 AT2G18750.1
AT2G18750.3
AT2G18750.2
AT2G18750
Calmodulin-binding protein
Chr1_-_22650072 1.76 AT1G61380.2
SD1-29
S-domain-1 29
Chr4_-_18232011 1.75 AT4G39140.5
AT4G39140.1
AT4G39140.2
AT4G39140.4
AT4G39140.3
AT4G39140
RING/U-box superfamily protein
Chr3_-_17401871 1.75 AT3G47250.3
AT3G47250.2
AT3G47250
transmembrane protein, putative (DUF247)
Chr5_+_4974671 1.74 AT5G15310.2
AT5G15310.4
AT5G15310.3
AT5G15310.1
MYB16
myb domain protein 16
Chr3_+_22630331 1.73 AT3G61150.1
HDG1
homeodomain GLABROUS 1
Chr5_+_21755251 1.72 AT5G53550.2
AT5G53550.3
AT5G53550.4
AT5G53550.5
AT5G53550.1
YSL3
YELLOW STRIPE like 3
Chr5_+_23559474 1.72 AT5G58250.1
EMB3143
YCF54
Chr3_-_1192659 1.72 AT3G04470.1
AT3G04470
Ankyrin repeat family protein
Chr2_+_19000180 1.72 AT2G46270.2
AT2G46270.1
AT2G46270.4
AT2G46270.3
GBF3
G-box binding factor 3
Chr4_-_1197630 1.71 AT4G02710.1
NET1C
Kinase interacting (KIP1-like) family protein
Chr2_-_15151575 1.71 AT2G36080.3
AT2G36080.2
AT2G36080.4
AT2G36080.1
ABS2
AP2/B3-like transcriptional factor family protein
Chr2_-_17040127 1.71 AT2G40820.2
AT2G40820.1
AT2G40820.3
AT2G40820.5
AT2G40820
stomatal closure actin-binding-like protein
Chr2_-_2843338 1.70 AT2G06925.2
AT2G06925.1
PLA2-ALPHA
Phospholipase A2 family protein
Chr5_+_18537239 1.70 AT5G45700.1
AT5G45700
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr5_-_17172787 1.70 AT5G42820.1
U2AF35B
Zinc finger C-x8-C-x5-C-x3-H type family protein
Chr2_+_15166720 1.69 AT2G36130.1
AT2G36130
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Chr1_+_22051133 1.68 AT1G59900.1
E1 ALPHA
pyruvate dehydrogenase complex E1 alpha subunit
Chr5_-_1409893 1.68 AT5G04850.2
AT5G04850.1
VPS60.2
SNF7 family protein
Chr1_+_5073031 1.67 AT1G14730.1
AT1G14730
Cytochrome b561/ferric reductase transmembrane protein family
Chr5_+_16844336 1.66 AT5G42146.1
AT5G42146
transmembrane protein
Chr1_-_4038912 1.66 AT1G11950.2
AT1G11950.1
AT1G11950
Transcription factor jumonji (jmjC) domain-containing protein
Chr4_-_12533924 1.66 AT4G24140.1
AT4G24140
alpha/beta-Hydrolases superfamily protein
Chr3_-_7834135 1.66 AT3G22190.2
AT3G22190.1
AT3G22190.3
IQD5
IQ-domain 5
Chr5_+_22865074 1.65 AT5G56460.1
AT5G56460
Protein kinase superfamily protein
Chr2_+_17507343 1.65 AT2G41940.1
ZFP8
zinc finger protein 8
Chr1_+_29575806 1.64 AT1G78630.1
emb1473
Ribosomal protein L13 family protein
Chr3_-_17401696 1.64 AT3G47250.1
AT3G47250
transmembrane protein, putative (DUF247)
Chr2_+_12744116 1.64 AT2G29890.4
AT2G29890.1
AT2G29890.2
AT2G29890.3
AT2G29890.5
VLN1
villin-like 1
Chr2_-_8739660 1.63 AT2G20270.2
AT2G20270.1
AT2G20270
Thioredoxin superfamily protein
Chr5_-_4722371 1.63 AT5G14640.1
SK13
shaggy-like kinase 13
Chr4_-_8435105 1.63 AT4G14720.1
AT4G14720.2
AT4G14720
TIFY domain/Divergent CCT motif family protein
Chr1_+_22051295 1.63 AT1G59900.2
E1 ALPHA
pyruvate dehydrogenase complex E1 alpha subunit
Chr1_+_23425352 1.63 AT1G63170.1
AT1G63170
Zinc finger, C3HC4 type (RING finger) family protein
Chr4_-_14790501 1.63 AT4G30200.2
AT4G30200.3
AT4G30200.4
AT4G30200.1
VEL1
vernalization5/VIN3-like protein
Chr1_-_1129551 1.62 AT1G04240.1
AT1G04240.2
SHY2
AUX/IAA transcriptional regulator family protein
Chr3_+_2167730 1.61 AT3G06868.1
AT3G06868
vitellogenin-like protein
Chr3_+_20069987 1.61 AT3G54220.1
SCR
GRAS family transcription factor
Chr1_-_29064637 1.61 AT1G77330.1
AT1G77330
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr4_-_2481590 1.61 AT4G04890.2
PDF2
protodermal factor 2
Chr1_+_26093026 1.61 AT1G69420.2
AT1G69420.1
AT1G69420
DHHC-type zinc finger family protein
Chr5_+_17564697 1.61 AT5G43740.2
AT5G43740.1
AT5G43740
Disease resistance protein (CC-NBS-LRR class) family
Chr1_-_2580678 1.60 AT1G08210.2
AT1G08210.1
AT1G08210.4
AT1G08210.3
AT1G08210
Eukaryotic aspartyl protease family protein
Chr3_+_10434924 1.60 AT3G28040.1
AT3G28040
Leucine-rich receptor-like protein kinase family protein
Chr5_-_4722048 1.60 AT5G14640.2
SK13
shaggy-like kinase 13
Chr1_-_26891284 1.59 AT1G71350.1
AT1G71350
eukaryotic translation initiation factor SUI1 family protein
Chr3_-_19776267 1.59 AT3G53340.4
AT3G53340.2
AT3G53340.3
AT3G53340.5
AT3G53340.1
NF-YB10
nuclear factor Y, subunit B10
Chr1_+_3349082 1.59 AT1G10210.1
AT1G10210.3
AT1G10210.2
MPK1
mitogen-activated protein kinase 1
Chr3_+_17987378 1.59 AT3G48530.1
KING1
SNF1-related protein kinase regulatory subunit gamma 1
Chr1_+_28365824 1.58 AT1G75540.1
BBX21
salt tolerance homolog2
Chr5_-_25146587 1.58 AT5G62630.1
HIPL2
hipl2 protein precursor
Chr5_-_24312784 1.58 AT5G60450.2
AT5G60450.1
ARF4
auxin response factor 4
Chr1_-_1996355 1.57 AT1G06520.1
GPAT1
glycerol-3-phosphate acyltransferase 1
Chr5_+_309374 1.57 AT5G01810.1
AT5G01810.2
AT5G01810.3
CIPK15
CBL-interacting protein kinase 15
Chr4_-_571595 1.57 AT4G01390.1
AT4G01390
TRAF-like family protein
Chr5_-_7731055 1.57 AT5G23040.1
AT5G23040.2
CDF1
cell growth defect factor-like protein (DUF3353)
Chr5_-_4697078 1.57 AT5G14570.1
NRT2.7
high affinity nitrate transporter 2.7
Chr3_+_10284808 1.56 AT3G27750.1
EMB3123
PPR containing protein
Chr5_-_19163918 1.56 AT5G47180.2
AT5G47180.1
AT5G47180
Plant VAMP (vesicle-associated membrane protein) family protein
Chr5_-_27504 1.56 AT5G01075.1
AT5G01075
Glycosyl hydrolase family 35 protein
Chr3_-_21963180 1.55 AT3G59420.1
CR4
crinkly4
Chr1_+_190408 1.55 AT1G01520.4
AT1G01520.2
AT1G01520.3
AT1G01520.1
AT1G01520.5
ASG4
Homeodomain-like superfamily protein
Chr1_+_18138169 1.54 AT1G49032.2
AT1G49032
hypothetical protein
Chr2_+_13529766 1.54 AT2G31820.1
AT2G31820
Ankyrin repeat family protein
Chr5_-_3286347 1.54 AT5G10450.3
AT5G10450.2
AT5G10450.4
GRF6
G-box regulating factor 6

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G38170

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
2.4 12.1 GO:0072708 response to sorbitol(GO:0072708)
1.2 3.5 GO:0032490 detection of molecule of bacterial origin(GO:0032490)
1.1 4.5 GO:1900409 positive regulation of cellular response to oxidative stress(GO:1900409)
1.1 4.3 GO:0046498 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
0.9 3.5 GO:0000023 maltose metabolic process(GO:0000023)
0.9 2.6 GO:0071485 cellular response to absence of light(GO:0071485)
0.7 2.1 GO:0010433 bract morphogenesis(GO:0010433) bract formation(GO:0010434)
0.7 2.0 GO:0071421 manganese ion transmembrane transport(GO:0071421)
0.7 1.3 GO:0035865 cellular response to potassium ion(GO:0035865)
0.6 0.6 GO:0010338 leaf formation(GO:0010338)
0.6 1.9 GO:0071217 response to cycloheximide(GO:0046898) cellular response to external biotic stimulus(GO:0071217)
0.6 2.4 GO:0002184 cytoplasmic translational termination(GO:0002184)
0.6 1.7 GO:0035017 cuticle pattern formation(GO:0035017)
0.6 1.7 GO:0015742 alpha-ketoglutarate transport(GO:0015742)
0.6 0.6 GO:0015813 L-glutamate transport(GO:0015813)
0.5 1.6 GO:0015812 gamma-aminobutyric acid transport(GO:0015812)
0.5 2.7 GO:0035627 ceramide transport(GO:0035627)
0.5 1.6 GO:1900111 positive regulation of histone H3-K9 dimethylation(GO:1900111)
0.5 1.6 GO:1904215 regulation of protein import into chloroplast stroma(GO:1904215)
0.5 0.5 GO:1900407 regulation of cellular response to oxidative stress(GO:1900407)
0.5 2.0 GO:0033478 UDP-rhamnose biosynthetic process(GO:0010253) UDP-rhamnose metabolic process(GO:0033478)
0.5 8.3 GO:0010050 vegetative phase change(GO:0010050)
0.5 3.4 GO:0043090 amino acid import(GO:0043090)
0.5 2.4 GO:0019048 modulation by virus of host morphology or physiology(GO:0019048)
0.5 7.1 GO:0048497 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.5 3.7 GO:0051693 negative regulation of actin filament depolymerization(GO:0030835) actin filament capping(GO:0051693)
0.4 2.6 GO:0043100 pyrimidine nucleobase salvage(GO:0043100)
0.4 0.9 GO:0010376 stomatal complex formation(GO:0010376)
0.4 2.9 GO:0007095 mitotic G2 DNA damage checkpoint(GO:0007095) G2 DNA damage checkpoint(GO:0031572)
0.4 4.9 GO:0043966 histone H3 acetylation(GO:0043966)
0.4 1.2 GO:0046740 transport of virus in host, cell to cell(GO:0046740) multi-organism intercellular transport(GO:1902586)
0.4 1.6 GO:1905157 positive regulation of photosynthesis(GO:1905157)
0.4 2.0 GO:0006809 nitric oxide biosynthetic process(GO:0006809)
0.4 1.5 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.4 3.7 GO:0010098 suspensor development(GO:0010098)
0.4 3.3 GO:0006086 acetyl-CoA biosynthetic process from pyruvate(GO:0006086)
0.4 1.8 GO:0010080 regulation of floral meristem growth(GO:0010080)
0.4 1.1 GO:0090547 response to low humidity(GO:0090547)
0.3 1.0 GO:0010184 cytokinin transport(GO:0010184)
0.3 1.7 GO:1901571 icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) icosanoid transport(GO:0071715) fatty acid derivative transport(GO:1901571) arachidonate transport(GO:1903963)
0.3 1.0 GO:0008334 histone mRNA metabolic process(GO:0008334)
0.3 1.3 GO:0019388 galactose catabolic process(GO:0019388) galactose catabolic process via UDP-galactose(GO:0033499)
0.3 2.7 GO:0033169 histone H3-K9 demethylation(GO:0033169)
0.3 1.0 GO:0001736 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.3 1.9 GO:0007112 male meiosis cytokinesis(GO:0007112)
0.3 12.7 GO:0055072 iron ion homeostasis(GO:0055072)
0.3 3.2 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.3 1.6 GO:0010444 guard mother cell differentiation(GO:0010444)
0.3 1.5 GO:0048281 inflorescence morphogenesis(GO:0048281)
0.3 1.8 GO:0042547 cell wall modification involved in multidimensional cell growth(GO:0042547)
0.3 0.6 GO:0010377 guard cell fate commitment(GO:0010377)
0.3 1.4 GO:0043478 pigment accumulation in response to UV light(GO:0043478) pigment accumulation in tissues in response to UV light(GO:0043479) pigment accumulation in tissues(GO:0043480) anthocyanin accumulation in tissues in response to UV light(GO:0043481)
0.3 2.0 GO:0043328 protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway(GO:0043328)
0.3 1.1 GO:0009102 biotin metabolic process(GO:0006768) biotin biosynthetic process(GO:0009102)
0.3 0.8 GO:0019695 choline metabolic process(GO:0019695)
0.3 3.1 GO:0006646 phosphatidylethanolamine biosynthetic process(GO:0006646) phosphatidylethanolamine metabolic process(GO:0046337)
0.3 1.9 GO:0070979 protein K11-linked ubiquitination(GO:0070979)
0.3 2.5 GO:0071249 cellular response to nitrate(GO:0071249)
0.3 1.4 GO:0005980 glycogen catabolic process(GO:0005980)
0.3 2.9 GO:0010039 response to iron ion(GO:0010039)
0.3 1.3 GO:1901535 regulation of DNA demethylation(GO:1901535)
0.3 1.0 GO:0019567 pentose biosynthetic process(GO:0019322) arabinose biosynthetic process(GO:0019567)
0.3 2.5 GO:0010031 circumnutation(GO:0010031) multicellular organismal movement(GO:0050879)
0.2 1.2 GO:1901404 regulation of chlorophyll catabolic process(GO:0010271) regulation of tetrapyrrole catabolic process(GO:1901404)
0.2 1.5 GO:0009855 determination of bilateral symmetry(GO:0009855)
0.2 0.7 GO:0045876 positive regulation of sister chromatid cohesion(GO:0045876)
0.2 2.0 GO:0010065 primary meristem tissue development(GO:0010065)
0.2 1.7 GO:0048363 mucilage pectin metabolic process(GO:0048363)
0.2 0.7 GO:0051444 negative regulation of protein ubiquitination(GO:0031397) negative regulation of ligase activity(GO:0051352) negative regulation of ubiquitin-protein transferase activity(GO:0051444) negative regulation of ubiquitin protein ligase activity(GO:1904667)
0.2 0.9 GO:0050992 dimethylallyl diphosphate biosynthetic process(GO:0050992) dimethylallyl diphosphate metabolic process(GO:0050993)
0.2 0.7 GO:0001560 regulation of cell growth by extracellular stimulus(GO:0001560)
0.2 0.7 GO:0080051 cutin transport(GO:0080051)
0.2 0.9 GO:0048464 sepal development(GO:0048442) flower calyx development(GO:0048464)
0.2 5.3 GO:0008356 asymmetric cell division(GO:0008356)
0.2 0.9 GO:1990118 sodium ion transmembrane transport(GO:0035725) sodium ion import(GO:0097369) sodium ion import across plasma membrane(GO:0098719) sodium ion import into cell(GO:1990118)
0.2 1.1 GO:0080024 indolebutyric acid metabolic process(GO:0080024)
0.2 2.3 GO:0010358 leaf shaping(GO:0010358)
0.2 1.1 GO:1900384 regulation of flavonol biosynthetic process(GO:1900384)
0.2 2.9 GO:0048359 mucilage metabolic process involved in seed coat development(GO:0048359)
0.2 0.6 GO:0018196 peptidyl-asparagine modification(GO:0018196) protein N-linked glycosylation via asparagine(GO:0018279)
0.2 1.1 GO:0010589 leaf proximal/distal pattern formation(GO:0010589)
0.2 1.5 GO:0016120 carotene biosynthetic process(GO:0016120)
0.2 0.6 GO:0098532 histone H3-K27 trimethylation(GO:0098532) regulation of histone H3-K27 trimethylation(GO:1902464)
0.2 11.0 GO:0042752 regulation of circadian rhythm(GO:0042752)
0.2 4.6 GO:0045037 protein import into chloroplast stroma(GO:0045037)
0.2 1.0 GO:0018874 benzoate metabolic process(GO:0018874)
0.2 0.6 GO:0019365 pyridine nucleotide salvage(GO:0019365)
0.2 1.6 GO:1901703 protein localization involved in auxin polar transport(GO:1901703)
0.2 2.0 GO:0080183 response to photooxidative stress(GO:0080183)
0.2 2.6 GO:0006621 protein retention in ER lumen(GO:0006621)
0.2 3.2 GO:0055062 phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506)
0.2 0.6 GO:0030242 pexophagy(GO:0030242)
0.2 1.8 GO:0080142 regulation of salicylic acid biosynthetic process(GO:0080142)
0.2 1.0 GO:0046208 spermine catabolic process(GO:0046208)
0.2 1.7 GO:0018107 peptidyl-threonine phosphorylation(GO:0018107) peptidyl-threonine modification(GO:0018210)
0.2 1.9 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
0.2 0.8 GO:0051211 protein localization to cytoskeleton(GO:0044380) anisotropic cell growth(GO:0051211) protein localization to microtubule cytoskeleton(GO:0072698)
0.2 1.1 GO:0071588 hydrogen peroxide mediated signaling pathway(GO:0071588)
0.2 1.9 GO:0048564 photosystem I assembly(GO:0048564)
0.2 0.9 GO:0009154 purine ribonucleotide catabolic process(GO:0009154) ribonucleotide catabolic process(GO:0009261) coenzyme A catabolic process(GO:0015938) nucleoside bisphosphate catabolic process(GO:0033869) ribonucleoside bisphosphate catabolic process(GO:0034031) purine nucleoside bisphosphate catabolic process(GO:0034034)
0.2 0.5 GO:0009830 cell wall modification involved in abscission(GO:0009830) cell wall disassembly(GO:0044277)
0.2 0.7 GO:0033306 phytol metabolic process(GO:0033306)
0.2 3.4 GO:0009880 embryonic pattern specification(GO:0009880)
0.2 3.0 GO:0010229 inflorescence development(GO:0010229)
0.2 0.7 GO:0000455 enzyme-directed rRNA pseudouridine synthesis(GO:0000455)
0.2 0.2 GO:2000045 regulation of G1/S transition of mitotic cell cycle(GO:2000045)
0.2 1.7 GO:0010088 phloem development(GO:0010088)
0.2 4.2 GO:0006012 galactose metabolic process(GO:0006012)
0.2 1.7 GO:1902183 regulation of shoot apical meristem development(GO:1902183)
0.2 0.5 GO:0051703 pollen tube reception(GO:0010483) intraspecies interaction between organisms(GO:0051703)
0.2 0.6 GO:0071491 red light signaling pathway(GO:0010161) cellular response to red light(GO:0071491)
0.2 1.6 GO:0090158 endoplasmic reticulum membrane organization(GO:0090158)
0.2 0.6 GO:0007569 cell aging(GO:0007569)
0.2 0.6 GO:0070509 calcium ion import(GO:0070509)
0.2 6.8 GO:0006623 protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666)
0.2 0.8 GO:0010390 histone monoubiquitination(GO:0010390)
0.2 0.8 GO:0031022 nuclear migration along microfilament(GO:0031022)
0.2 1.1 GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay(GO:0000184)
0.2 0.8 GO:1901004 ubiquinone-6 metabolic process(GO:1901004) ubiquinone-6 biosynthetic process(GO:1901006)
0.2 2.6 GO:0002183 cytoplasmic translational initiation(GO:0002183)
0.1 0.6 GO:0071313 cellular response to alkaloid(GO:0071312) cellular response to caffeine(GO:0071313) cellular response to purine-containing compound(GO:0071415) negative regulation of cellular response to caffeine(GO:1901181)
0.1 2.9 GO:0055075 potassium ion homeostasis(GO:0055075)
0.1 2.3 GO:0070298 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.1 0.9 GO:1903651 positive regulation of cytoplasmic transport(GO:1903651)
0.1 0.7 GO:0006517 protein deglycosylation(GO:0006517)
0.1 1.0 GO:0034471 rRNA 5'-end processing(GO:0000967) ncRNA 5'-end processing(GO:0034471)
0.1 0.7 GO:0007266 Rho protein signal transduction(GO:0007266)
0.1 0.6 GO:0048863 stem cell differentiation(GO:0048863)
0.1 2.7 GO:0000373 Group II intron splicing(GO:0000373)
0.1 0.3 GO:0051099 positive regulation of binding(GO:0051099)
0.1 1.5 GO:0070973 protein localization to endoplasmic reticulum exit site(GO:0070973)
0.1 0.5 GO:0048480 stigma development(GO:0048480)
0.1 1.0 GO:0080148 negative regulation of response to water deprivation(GO:0080148)
0.1 1.1 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.1 0.9 GO:0044818 negative regulation of G2/M transition of mitotic cell cycle(GO:0010972) mitotic G2/M transition checkpoint(GO:0044818) negative regulation of cell cycle G2/M phase transition(GO:1902750)
0.1 0.5 GO:1902916 regulation of protein polyubiquitination(GO:1902914) positive regulation of protein polyubiquitination(GO:1902916)
0.1 1.0 GO:0009819 drought recovery(GO:0009819)
0.1 5.0 GO:0002181 cytoplasmic translation(GO:0002181)
0.1 1.4 GO:0031539 positive regulation of anthocyanin metabolic process(GO:0031539)
0.1 5.9 GO:0045732 positive regulation of protein catabolic process(GO:0045732)
0.1 0.3 GO:0051098 regulation of binding(GO:0051098)
0.1 0.6 GO:0010336 gibberellic acid homeostasis(GO:0010336)
0.1 3.9 GO:0046839 phospholipid dephosphorylation(GO:0046839)
0.1 0.4 GO:0010289 homogalacturonan biosynthetic process(GO:0010289) homogalacturonan metabolic process(GO:0010394)
0.1 5.7 GO:0006414 translational elongation(GO:0006414)
0.1 3.5 GO:0010268 brassinosteroid homeostasis(GO:0010268)
0.1 4.3 GO:0030705 cytoskeleton-dependent intracellular transport(GO:0030705)
0.1 0.6 GO:1905177 tracheary element differentiation(GO:1905177)
0.1 1.1 GO:0030104 water homeostasis(GO:0030104)
0.1 2.8 GO:0048768 root hair cell tip growth(GO:0048768)
0.1 1.1 GO:0045039 protein import into mitochondrial inner membrane(GO:0045039)
0.1 3.0 GO:2000034 regulation of seed maturation(GO:2000034)
0.1 0.6 GO:0010032 meiotic chromosome condensation(GO:0010032)
0.1 0.6 GO:0045730 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.1 0.3 GO:1905181 regulation of urease activity(GO:1905181) positive regulation of urease activity(GO:1905182)
0.1 0.5 GO:0009647 skotomorphogenesis(GO:0009647)
0.1 0.5 GO:0043618 regulation of transcription from RNA polymerase II promoter in response to stress(GO:0043618)
0.1 0.7 GO:0051571 positive regulation of histone H3-K4 methylation(GO:0051571)
0.1 1.0 GO:0045836 positive regulation of meiotic nuclear division(GO:0045836) positive regulation of nuclear division(GO:0051785)
0.1 0.5 GO:1901332 negative regulation of lateral root development(GO:1901332)
0.1 1.1 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.1 1.1 GO:0043462 regulation of ATPase activity(GO:0043462)
0.1 1.2 GO:0031053 primary miRNA processing(GO:0031053)
0.1 2.2 GO:0000460 maturation of 5.8S rRNA(GO:0000460)
0.1 1.2 GO:0016925 protein sumoylation(GO:0016925)
0.1 0.3 GO:0042353 fucose biosynthetic process(GO:0042353)
0.1 3.2 GO:0009789 positive regulation of abscisic acid-activated signaling pathway(GO:0009789)
0.1 1.1 GO:0031365 N-terminal protein amino acid modification(GO:0031365)
0.1 1.3 GO:0043248 proteasome assembly(GO:0043248)
0.1 1.2 GO:0005987 sucrose catabolic process(GO:0005987)
0.1 6.7 GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146)
0.1 0.7 GO:0051293 establishment of mitotic spindle orientation(GO:0000132) establishment of mitotic spindle localization(GO:0040001) establishment of spindle localization(GO:0051293) establishment of spindle orientation(GO:0051294) spindle localization(GO:0051653)
0.1 2.0 GO:0009638 phototropism(GO:0009638)
0.1 0.8 GO:0043096 adenine salvage(GO:0006168) purine nucleobase salvage(GO:0043096)
0.1 0.5 GO:0051646 mitochondrion localization(GO:0051646)
0.1 0.4 GO:0031023 microtubule organizing center organization(GO:0031023)
0.1 1.2 GO:0015865 purine nucleotide transport(GO:0015865)
0.1 2.9 GO:0006661 phosphatidylinositol biosynthetic process(GO:0006661)
0.1 1.4 GO:0010103 stomatal complex morphogenesis(GO:0010103)
0.1 0.9 GO:0006559 L-phenylalanine catabolic process(GO:0006559) erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process(GO:1902222)
0.1 1.8 GO:0009768 photosynthesis, light harvesting in photosystem I(GO:0009768)
0.1 0.4 GO:0009245 lipid A biosynthetic process(GO:0009245) lipid A metabolic process(GO:0046493) lipooligosaccharide metabolic process(GO:1901269) lipooligosaccharide biosynthetic process(GO:1901271)
0.1 0.8 GO:0006120 mitochondrial electron transport, NADH to ubiquinone(GO:0006120)
0.1 0.3 GO:0046786 viral replication complex formation and maintenance(GO:0046786)
0.1 0.7 GO:0042176 regulation of protein catabolic process(GO:0042176)
0.1 1.6 GO:0016024 CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341)
0.1 0.2 GO:0045862 positive regulation of proteolysis(GO:0045862)
0.1 1.3 GO:0030488 tRNA methylation(GO:0030488)
0.1 1.8 GO:0060627 regulation of vesicle-mediated transport(GO:0060627)
0.1 0.5 GO:2000105 positive regulation of DNA endoreduplication(GO:0032877) positive regulation of DNA-dependent DNA replication(GO:2000105)
0.1 2.5 GO:0006284 base-excision repair(GO:0006284)
0.1 0.6 GO:0006376 mRNA splice site selection(GO:0006376)
0.1 0.4 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.1 3.2 GO:0009816 defense response to bacterium, incompatible interaction(GO:0009816)
0.1 1.9 GO:0002213 defense response to insect(GO:0002213)
0.1 1.4 GO:0045036 protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596)
0.1 2.1 GO:0048506 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.1 1.3 GO:0006782 protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501)
0.1 0.4 GO:2001293 malonyl-CoA metabolic process(GO:2001293) malonyl-CoA biosynthetic process(GO:2001295)
0.1 0.7 GO:0045116 protein neddylation(GO:0045116)
0.1 1.3 GO:1900865 chloroplast RNA modification(GO:1900865)
0.1 2.1 GO:0071427 mRNA export from nucleus(GO:0006406) mRNA transport(GO:0051028) mRNA-containing ribonucleoprotein complex export from nucleus(GO:0071427)
0.1 0.3 GO:0000188 inactivation of MAPK activity(GO:0000188)
0.1 0.1 GO:0010220 positive regulation of vernalization response(GO:0010220)
0.1 2.4 GO:0006897 endocytosis(GO:0006897)
0.1 0.3 GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly(GO:0010606)
0.1 0.1 GO:0010191 mucilage metabolic process(GO:0010191)
0.1 0.4 GO:0010019 chloroplast-nucleus signaling pathway(GO:0010019)
0.1 1.6 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.1 6.4 GO:0018105 peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209)
0.1 5.1 GO:0007623 circadian rhythm(GO:0007623) rhythmic process(GO:0048511)
0.1 0.5 GO:1902290 positive regulation of defense response to oomycetes(GO:1902290)
0.1 0.1 GO:0045332 phospholipid translocation(GO:0045332)
0.1 0.5 GO:0036388 pre-replicative complex assembly involved in nuclear cell cycle DNA replication(GO:0006267) pre-replicative complex assembly(GO:0036388) pre-replicative complex assembly involved in cell cycle DNA replication(GO:1902299)
0.1 0.8 GO:0042372 phylloquinone biosynthetic process(GO:0042372) phylloquinone metabolic process(GO:0042374)
0.1 2.1 GO:0010027 thylakoid membrane organization(GO:0010027)
0.1 0.6 GO:0070919 production of siRNA involved in chromatin silencing by small RNA(GO:0070919)
0.1 0.9 GO:0006002 fructose 6-phosphate metabolic process(GO:0006002)
0.1 1.2 GO:2000031 regulation of salicylic acid mediated signaling pathway(GO:2000031)
0.1 0.6 GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway(GO:0019287)
0.1 0.5 GO:0070129 regulation of mitochondrial translation(GO:0070129) positive regulation of mitochondrial translation(GO:0070131)
0.1 0.2 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.1 1.1 GO:0055070 copper ion homeostasis(GO:0055070)
0.1 1.2 GO:0009959 negative gravitropism(GO:0009959)
0.1 1.5 GO:0009695 jasmonic acid biosynthetic process(GO:0009695)
0.1 0.4 GO:0010364 regulation of ethylene biosynthetic process(GO:0010364) regulation of sulfur amino acid metabolic process(GO:0031335) regulation of olefin metabolic process(GO:1900908) regulation of olefin biosynthetic process(GO:1900911)
0.1 0.7 GO:0032544 plastid translation(GO:0032544)
0.1 0.3 GO:0009090 homoserine biosynthetic process(GO:0009090)
0.1 1.2 GO:0010020 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.1 0.7 GO:0006265 DNA topological change(GO:0006265)
0.1 0.9 GO:0009615 response to virus(GO:0009615)
0.1 1.1 GO:0007093 mitotic cell cycle checkpoint(GO:0007093)
0.1 1.1 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.1 0.1 GO:0046104 deoxyribonucleoside metabolic process(GO:0009120) thymidine metabolic process(GO:0046104) pyrimidine deoxyribonucleoside metabolic process(GO:0046125)
0.1 0.5 GO:0070475 rRNA base methylation(GO:0070475)
0.1 0.2 GO:0071480 cellular response to gamma radiation(GO:0071480)
0.1 3.1 GO:0009624 response to nematode(GO:0009624)
0.1 0.7 GO:1901371 regulation of leaf morphogenesis(GO:1901371)
0.0 1.1 GO:0051225 spindle assembly(GO:0051225)
0.0 1.9 GO:0010089 xylem development(GO:0010089)
0.0 0.2 GO:0006370 7-methylguanosine mRNA capping(GO:0006370)
0.0 1.7 GO:0006413 translational initiation(GO:0006413)
0.0 2.2 GO:0042538 hyperosmotic salinity response(GO:0042538)
0.0 1.2 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.0 1.9 GO:0051607 defense response to virus(GO:0051607)
0.0 0.9 GO:0043631 mRNA polyadenylation(GO:0006378) RNA polyadenylation(GO:0043631)
0.0 2.3 GO:0000209 protein polyubiquitination(GO:0000209)
0.0 0.2 GO:0090116 C-5 methylation of cytosine(GO:0090116)
0.0 0.5 GO:0042732 D-xylose metabolic process(GO:0042732)
0.0 0.6 GO:0046513 ceramide biosynthetic process(GO:0046513)
0.0 0.5 GO:2000904 regulation of starch metabolic process(GO:2000904)
0.0 0.7 GO:0009583 phototransduction(GO:0007602) detection of light stimulus(GO:0009583) red, far-red light phototransduction(GO:0009585)
0.0 0.2 GO:0010396 rhamnogalacturonan II biosynthetic process(GO:0010306) rhamnogalacturonan II metabolic process(GO:0010396)
0.0 4.6 GO:0009658 chloroplast organization(GO:0009658)
0.0 2.4 GO:0007018 microtubule-based movement(GO:0007018)
0.0 0.4 GO:0010232 vascular transport(GO:0010232) phloem transport(GO:0010233)
0.0 2.2 GO:0010431 seed maturation(GO:0010431)
0.0 0.3 GO:0016584 nucleosome positioning(GO:0016584) negative regulation of chromatin silencing(GO:0031936)
0.0 1.0 GO:0031122 cytoplasmic microtubule organization(GO:0031122)
0.0 1.9 GO:0009788 negative regulation of abscisic acid-activated signaling pathway(GO:0009788)
0.0 0.5 GO:0009657 plastid organization(GO:0009657)
0.0 0.3 GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway(GO:0007205)
0.0 5.6 GO:0006457 protein folding(GO:0006457)
0.0 1.0 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.0 0.7 GO:0001522 pseudouridine synthesis(GO:0001522)
0.0 0.6 GO:0009934 regulation of meristem structural organization(GO:0009934)
0.0 0.1 GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway(GO:0071596)
0.0 0.6 GO:0006890 retrograde vesicle-mediated transport, Golgi to ER(GO:0006890)
0.0 0.0 GO:0051196 regulation of coenzyme metabolic process(GO:0051196)
0.0 1.7 GO:0006913 nucleocytoplasmic transport(GO:0006913) nuclear transport(GO:0051169)
0.0 1.2 GO:0000122 negative regulation of transcription from RNA polymerase II promoter(GO:0000122)
0.0 0.2 GO:0045337 geranyl diphosphate metabolic process(GO:0033383) geranyl diphosphate biosynthetic process(GO:0033384) farnesyl diphosphate biosynthetic process(GO:0045337)
0.0 0.4 GO:0071489 red or far-red light signaling pathway(GO:0010017) cellular response to red or far red light(GO:0071489)
0.0 1.3 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.0 1.0 GO:0048767 root hair elongation(GO:0048767)
0.0 1.3 GO:0000226 microtubule cytoskeleton organization(GO:0000226)
0.0 1.1 GO:0006487 protein N-linked glycosylation(GO:0006487)
0.0 1.5 GO:0061025 membrane fusion(GO:0061025)
0.0 0.7 GO:0009612 response to mechanical stimulus(GO:0009612)
0.0 0.5 GO:0006538 glutamate catabolic process(GO:0006538)
0.0 2.8 GO:0080167 response to karrikin(GO:0080167)
0.0 0.7 GO:0000028 ribosomal small subunit assembly(GO:0000028)
0.0 0.7 GO:1900150 regulation of defense response to fungus(GO:1900150)
0.0 2.3 GO:0016579 protein deubiquitination(GO:0016579)
0.0 0.6 GO:0007186 G-protein coupled receptor signaling pathway(GO:0007186)
0.0 1.3 GO:0090305 nucleic acid phosphodiester bond hydrolysis(GO:0090305)
0.0 0.7 GO:0010143 cutin biosynthetic process(GO:0010143)
0.0 0.2 GO:0046520 sphingoid biosynthetic process(GO:0046520)
0.0 0.1 GO:0032456 endocytic recycling(GO:0032456)
0.0 0.1 GO:0010048 vernalization response(GO:0010048)
0.0 0.8 GO:0000959 mitochondrial RNA metabolic process(GO:0000959)
0.0 0.7 GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000462)
0.0 0.6 GO:0009395 phospholipid catabolic process(GO:0009395)
0.0 0.3 GO:0018026 peptidyl-lysine monomethylation(GO:0018026)
0.0 4.6 GO:0009733 response to auxin(GO:0009733)
0.0 0.4 GO:0090332 stomatal closure(GO:0090332)
0.0 0.5 GO:0009625 response to insect(GO:0009625)
0.0 0.3 GO:0033619 membrane protein proteolysis(GO:0033619)
0.0 0.2 GO:0010440 stomatal lineage progression(GO:0010440)
0.0 3.1 GO:0009408 response to heat(GO:0009408)
0.0 0.4 GO:0009098 leucine biosynthetic process(GO:0009098)
0.0 0.2 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.0 0.6 GO:0032880 regulation of protein localization(GO:0032880)
0.0 1.5 GO:0007015 actin filament organization(GO:0007015)
0.0 0.2 GO:0044419 interspecies interaction between organisms(GO:0044419)
0.0 0.7 GO:0034249 negative regulation of translation(GO:0017148) negative regulation of cellular amide metabolic process(GO:0034249)
0.0 0.1 GO:0060860 regulation of floral organ abscission(GO:0060860) negative regulation of floral organ abscission(GO:0060862)
0.0 3.9 GO:0016311 dephosphorylation(GO:0016311)
0.0 1.2 GO:0072657 protein localization to membrane(GO:0072657)
0.0 0.7 GO:0009910 negative regulation of flower development(GO:0009910)
0.0 2.0 GO:0006486 protein glycosylation(GO:0006486) glycoprotein biosynthetic process(GO:0009101) macromolecule glycosylation(GO:0043413)
0.0 0.1 GO:0031848 protection from non-homologous end joining at telomere(GO:0031848)
0.0 0.6 GO:0018022 peptidyl-lysine methylation(GO:0018022)
0.0 0.0 GO:0015909 long-chain fatty acid transport(GO:0015909)
0.0 0.4 GO:0042744 hydrogen peroxide catabolic process(GO:0042744)
0.0 0.7 GO:0048573 photoperiodism, flowering(GO:0048573)
0.0 0.1 GO:0000712 resolution of meiotic recombination intermediates(GO:0000712)
0.0 0.9 GO:0010150 leaf senescence(GO:0010150)
0.0 0.6 GO:0045454 cell redox homeostasis(GO:0045454)
0.0 0.4 GO:0006333 chromatin assembly or disassembly(GO:0006333)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 3.3 GO:0005967 mitochondrial pyruvate dehydrogenase complex(GO:0005967)
0.6 2.4 GO:0018444 translation release factor complex(GO:0018444)
0.6 2.3 GO:0030870 Mre11 complex(GO:0030870)
0.5 2.7 GO:0071541 eukaryotic translation initiation factor 3 complex, eIF3m(GO:0071541)
0.4 2.1 GO:0009360 DNA polymerase III complex(GO:0009360)
0.4 2.8 GO:0089701 U2AF(GO:0089701)
0.3 3.1 GO:0016272 prefoldin complex(GO:0016272)
0.3 2.0 GO:0033180 proton-transporting V-type ATPase, V1 domain(GO:0033180)
0.3 1.1 GO:0042721 mitochondrial inner membrane protein insertion complex(GO:0042721)
0.2 0.9 GO:0030132 clathrin coat of coated pit(GO:0030132)
0.2 1.6 GO:0030139 endocytic vesicle(GO:0030139)
0.2 2.0 GO:0000813 ESCRT I complex(GO:0000813)
0.2 0.9 GO:0000836 ER ubiquitin ligase complex(GO:0000835) Hrd1p ubiquitin ligase complex(GO:0000836) Hrd1p ubiquitin ligase ERAD-L complex(GO:0000839)
0.2 1.7 GO:0008250 oligosaccharyltransferase complex(GO:0008250)
0.2 1.2 GO:0001405 presequence translocase-associated import motor(GO:0001405)
0.2 1.6 GO:0005784 Sec61 translocon complex(GO:0005784)
0.2 1.6 GO:0055037 recycling endosome(GO:0055037)
0.2 0.6 GO:0016323 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.2 1.1 GO:0000164 protein phosphatase type 1 complex(GO:0000164)
0.2 1.7 GO:0005677 chromatin silencing complex(GO:0005677)
0.2 1.8 GO:0017119 Golgi transport complex(GO:0017119)
0.2 3.7 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.2 1.2 GO:0009840 chloroplastic endopeptidase Clp complex(GO:0009840)
0.2 1.1 GO:0016363 nuclear matrix(GO:0016363)
0.2 2.3 GO:0030687 preribosome, large subunit precursor(GO:0030687)
0.1 0.6 GO:0034271 phosphatidylinositol 3-kinase complex(GO:0005942) phosphatidylinositol 3-kinase complex, class III, type I(GO:0034271) phosphatidylinositol 3-kinase complex, class III, type II(GO:0034272) phosphatidylinositol 3-kinase complex, class III(GO:0035032)
0.1 3.5 GO:0005871 kinesin complex(GO:0005871)
0.1 0.9 GO:0000796 condensin complex(GO:0000796)
0.1 1.0 GO:0005847 mRNA cleavage and polyadenylation specificity factor complex(GO:0005847)
0.1 0.7 GO:0034515 proteasome storage granule(GO:0034515)
0.1 0.9 GO:0005664 origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664)
0.1 3.0 GO:0031012 extracellular matrix(GO:0031012)
0.1 1.1 GO:0005697 telomerase holoenzyme complex(GO:0005697)
0.1 0.4 GO:0005775 vacuolar lumen(GO:0005775)
0.1 0.4 GO:0034066 RIC1-RGP1 guanyl-nucleotide exchange factor complex(GO:0034066)
0.1 1.4 GO:0005832 chaperonin-containing T-complex(GO:0005832)
0.1 1.8 GO:0009547 plastid ribosome(GO:0009547)
0.1 0.6 GO:0030663 COPI vesicle coat(GO:0030126) COPI-coated vesicle membrane(GO:0030663)
0.1 0.7 GO:0005844 polysome(GO:0005844)
0.1 9.1 GO:0005635 nuclear envelope(GO:0005635)
0.1 1.5 GO:0005801 cis-Golgi network(GO:0005801)
0.1 5.5 GO:0005770 late endosome(GO:0005770)
0.1 0.3 GO:0005846 nuclear cap binding complex(GO:0005846)
0.1 2.2 GO:0000118 histone deacetylase complex(GO:0000118)
0.1 1.2 GO:0045298 tubulin complex(GO:0045298)
0.1 0.5 GO:0005849 mRNA cleavage factor complex(GO:0005849)
0.1 0.2 GO:0005656 nuclear pre-replicative complex(GO:0005656) pre-replicative complex(GO:0036387)
0.1 1.5 GO:0009898 cytoplasmic side of plasma membrane(GO:0009898)
0.1 0.7 GO:0009533 chloroplast stromal thylakoid(GO:0009533)
0.1 1.2 GO:0048471 perinuclear region of cytoplasm(GO:0048471)
0.1 1.1 GO:0005880 nuclear microtubule(GO:0005880)
0.1 1.1 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
0.1 1.7 GO:0005852 eukaryotic translation initiation factor 3 complex(GO:0005852)
0.1 1.7 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.1 5.6 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.1 4.5 GO:0009707 chloroplast outer membrane(GO:0009707)
0.1 0.5 GO:0031372 ubiquitin conjugating enzyme complex(GO:0031371) UBC13-MMS2 complex(GO:0031372)
0.1 0.7 GO:0072686 mitotic spindle(GO:0072686)
0.1 0.1 GO:0009501 amyloplast(GO:0009501)
0.1 0.4 GO:0017053 transcriptional repressor complex(GO:0017053)
0.1 1.6 GO:0009654 photosystem II oxygen evolving complex(GO:0009654)
0.1 8.2 GO:0022625 cytosolic large ribosomal subunit(GO:0022625)
0.1 0.5 GO:0055028 cortical microtubule(GO:0055028)
0.1 0.5 GO:0042555 MCM complex(GO:0042555)
0.1 0.6 GO:0005685 U1 snRNP(GO:0005685)
0.1 2.4 GO:0042644 chloroplast nucleoid(GO:0042644)
0.1 0.3 GO:1990124 messenger ribonucleoprotein complex(GO:1990124)
0.1 0.4 GO:0070390 transcription export complex 2(GO:0070390)
0.1 7.3 GO:0000790 nuclear chromatin(GO:0000790)
0.1 1.5 GO:0005875 microtubule associated complex(GO:0005875)
0.0 1.4 GO:0005680 anaphase-promoting complex(GO:0005680)
0.0 2.1 GO:0009524 phragmoplast(GO:0009524)
0.0 8.5 GO:0022626 cytosolic ribosome(GO:0022626)
0.0 0.8 GO:0016459 myosin complex(GO:0016459)
0.0 0.6 GO:0044426 cell wall part(GO:0044426) external encapsulating structure part(GO:0044462)
0.0 0.6 GO:0005682 U5 snRNP(GO:0005682)
0.0 0.1 GO:0017059 palmitoyltransferase complex(GO:0002178) serine C-palmitoyltransferase complex(GO:0017059) endoplasmic reticulum palmitoyltransferase complex(GO:0031211)
0.0 0.2 GO:0042765 GPI-anchor transamidase complex(GO:0042765)
0.0 0.3 GO:0098852 lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852)
0.0 0.9 GO:0044445 cytosolic part(GO:0044445)
0.0 1.4 GO:0000137 Golgi cis cisterna(GO:0000137)
0.0 32.1 GO:0030054 cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044)
0.0 2.2 GO:0016607 nuclear speck(GO:0016607)
0.0 2.2 GO:0031225 anchored component of membrane(GO:0031225)
0.0 1.3 GO:0000785 chromatin(GO:0000785)
0.0 0.9 GO:0031201 SNARE complex(GO:0031201)
0.0 1.1 GO:0010008 endosome membrane(GO:0010008)
0.0 1.1 GO:0032040 small-subunit processome(GO:0032040)
0.0 1.5 GO:0031227 intrinsic component of endoplasmic reticulum membrane(GO:0031227)
0.0 1.6 GO:0009706 chloroplast inner membrane(GO:0009706)
0.0 0.4 GO:0033179 proton-transporting V-type ATPase, V0 domain(GO:0033179)
0.0 16.4 GO:0005773 vacuole(GO:0005773)
0.0 0.3 GO:0005797 Golgi medial cisterna(GO:0005797)
0.0 0.3 GO:0030125 clathrin vesicle coat(GO:0030125)
0.0 0.6 GO:0005778 peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903)
0.0 1.2 GO:0030964 mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271)
0.0 0.4 GO:0031306 intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307)
0.0 4.7 GO:0005730 nucleolus(GO:0005730)
0.0 48.4 GO:0005886 plasma membrane(GO:0005886)
0.0 1.0 GO:0015629 actin cytoskeleton(GO:0015629)
0.0 1.5 GO:0000138 Golgi trans cisterna(GO:0000138)
0.0 1.2 GO:0097708 cytoplasmic vesicle(GO:0031410) intracellular vesicle(GO:0097708)
0.0 0.1 GO:0000439 core TFIIH complex(GO:0000439)
0.0 0.4 GO:0000139 Golgi membrane(GO:0000139)
0.0 1.0 GO:0000428 DNA-directed RNA polymerase complex(GO:0000428)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.1 4.5 GO:0019172 glyoxalase III activity(GO:0019172)
1.0 3.0 GO:0016802 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
1.0 10.8 GO:0000293 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.9 4.6 GO:0015186 L-glutamine transmembrane transporter activity(GO:0015186)
0.9 15.1 GO:0016157 sucrose synthase activity(GO:0016157)
0.9 2.6 GO:0005046 KDEL sequence binding(GO:0005046)
0.8 3.4 GO:0004307 ethanolaminephosphotransferase activity(GO:0004307)
0.8 3.9 GO:1990825 sequence-specific mRNA binding(GO:1990825)
0.7 2.9 GO:0051980 iron chelate transmembrane transporter activity(GO:0015603) iron-nicotianamine transmembrane transporter activity(GO:0051980)
0.7 3.5 GO:0035197 siRNA binding(GO:0035197)
0.7 2.1 GO:0001216 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.7 2.0 GO:0010280 UDP-L-rhamnose synthase activity(GO:0010280) UDP-glucose 4,6-dehydratase activity(GO:0050377)
0.7 2.0 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.6 1.9 GO:0019003 GDP binding(GO:0019003)
0.6 2.5 GO:0004617 phosphoglycerate dehydrogenase activity(GO:0004617)
0.5 1.6 GO:0015185 gamma-aminobutyric acid transmembrane transporter activity(GO:0015185)
0.5 2.7 GO:0035620 ceramide transporter activity(GO:0035620) sphingolipid transporter activity(GO:0046624) ceramide 1-phosphate binding(GO:1902387) ceramide 1-phosphate transporter activity(GO:1902388)
0.5 2.7 GO:0032454 histone demethylase activity (H3-K9 specific)(GO:0032454)
0.5 2.4 GO:0030371 translation repressor activity(GO:0030371)
0.5 3.8 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
0.5 3.3 GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity(GO:0004739)
0.5 4.1 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.5 2.3 GO:0015367 oxoglutarate:malate antiporter activity(GO:0015367)
0.4 1.3 GO:0004034 aldose 1-epimerase activity(GO:0004034)
0.4 1.8 GO:0008395 steroid hydroxylase activity(GO:0008395)
0.4 1.7 GO:0047498 calcium-dependent phospholipase A2 activity(GO:0047498)
0.4 1.6 GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227)
0.4 2.0 GO:0038199 ethylene receptor activity(GO:0038199) ethylene binding(GO:0051740) alkene binding(GO:0072328)
0.3 2.1 GO:0033836 flavonol 7-O-beta-glucosyltransferase activity(GO:0033836)
0.3 1.4 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.3 2.4 GO:0046030 inositol trisphosphate phosphatase activity(GO:0046030)
0.3 4.9 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.3 0.9 GO:0004452 isopentenyl-diphosphate delta-isomerase activity(GO:0004452)
0.3 0.9 GO:0003986 acetyl-CoA hydrolase activity(GO:0003986)
0.3 1.7 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)
0.3 1.1 GO:0070283 radical SAM enzyme activity(GO:0070283)
0.3 0.8 GO:0000234 phosphoethanolamine N-methyltransferase activity(GO:0000234)
0.3 0.3 GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity(GO:0017017) MAP kinase phosphatase activity(GO:0033549)
0.3 1.9 GO:0001872 (1->3)-beta-D-glucan binding(GO:0001872)
0.3 0.8 GO:0052629 phosphatidylinositol-3-phosphatase activity(GO:0004438) phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.3 1.1 GO:0070034 telomerase RNA binding(GO:0070034)
0.3 1.3 GO:0010313 phytochrome binding(GO:0010313)
0.3 2.8 GO:0030628 pre-mRNA 3'-splice site binding(GO:0030628)
0.3 2.8 GO:0016161 beta-amylase activity(GO:0016161)
0.2 1.7 GO:0008157 protein phosphatase 1 binding(GO:0008157)
0.2 2.0 GO:0010011 auxin binding(GO:0010011)
0.2 2.7 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.2 1.7 GO:0017112 Rab guanyl-nucleotide exchange factor activity(GO:0017112)
0.2 0.7 GO:0005094 Rho GDP-dissociation inhibitor activity(GO:0005094)
0.2 2.8 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.2 1.2 GO:0003680 AT DNA binding(GO:0003680)
0.2 2.8 GO:0010385 double-stranded methylated DNA binding(GO:0010385)
0.2 2.9 GO:0042389 omega-3 fatty acid desaturase activity(GO:0042389)
0.2 2.5 GO:0008725 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.2 0.9 GO:0010296 prenylcysteine methylesterase activity(GO:0010296)
0.2 0.9 GO:1990381 ubiquitin-specific protease binding(GO:1990381)
0.2 0.9 GO:0016034 maleylacetoacetate isomerase activity(GO:0016034)
0.2 1.1 GO:0030943 mitochondrion targeting sequence binding(GO:0030943)
0.2 1.2 GO:0009884 cytokinin receptor activity(GO:0009884)
0.2 0.6 GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity(GO:0004514)
0.2 2.1 GO:0047134 protein-disulfide reductase activity(GO:0047134)
0.2 3.8 GO:0005381 iron ion transmembrane transporter activity(GO:0005381)
0.2 2.5 GO:0004177 aminopeptidase activity(GO:0004177)
0.2 2.3 GO:0000014 single-stranded DNA endodeoxyribonuclease activity(GO:0000014)
0.2 0.7 GO:0000035 acyl binding(GO:0000035)
0.2 2.7 GO:0008144 drug binding(GO:0008144) cyclosporin A binding(GO:0016018)
0.2 2.1 GO:0003689 DNA clamp loader activity(GO:0003689) protein-DNA loading ATPase activity(GO:0033170)
0.2 6.3 GO:0015385 sodium:proton antiporter activity(GO:0015385)
0.2 1.5 GO:0019903 protein phosphatase binding(GO:0019903)
0.2 0.8 GO:0004028 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028)
0.2 0.5 GO:0042577 sphingosine-1-phosphate phosphatase activity(GO:0042392) lipid phosphatase activity(GO:0042577)
0.2 3.5 GO:0060090 binding, bridging(GO:0060090)
0.2 0.8 GO:0002020 protease binding(GO:0002020)
0.1 1.0 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.1 2.1 GO:0008409 5'-3' exonuclease activity(GO:0008409)
0.1 1.1 GO:0043539 protein serine/threonine kinase activator activity(GO:0043539)
0.1 1.0 GO:0046592 polyamine oxidase activity(GO:0046592)
0.1 1.8 GO:0016208 AMP binding(GO:0016208)
0.1 5.5 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.1 7.2 GO:0009931 calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857)
0.1 0.9 GO:0003872 6-phosphofructokinase activity(GO:0003872)
0.1 1.6 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.1 3.6 GO:0045309 protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219)
0.1 3.6 GO:0004725 protein tyrosine phosphatase activity(GO:0004725)
0.1 3.1 GO:0044183 protein binding involved in protein folding(GO:0044183)
0.1 3.5 GO:0019888 protein phosphatase regulator activity(GO:0019888)
0.1 1.2 GO:0005471 ATP:ADP antiporter activity(GO:0005471)
0.1 0.6 GO:0016174 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.1 0.2 GO:0052640 salicylic acid glucosyltransferase (glucoside-forming) activity(GO:0052640)
0.1 0.3 GO:0004412 homoserine dehydrogenase activity(GO:0004412)
0.1 1.7 GO:0031369 translation initiation factor binding(GO:0031369)
0.1 0.5 GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor(GO:0016653)
0.1 1.6 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.1 0.5 GO:0051731 polynucleotide 5'-hydroxyl-kinase activity(GO:0051731)
0.1 0.9 GO:0043995 histone acetyltransferase activity (H4-K5 specific)(GO:0043995)
0.1 1.3 GO:0034594 phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity(GO:0034485) phosphatidylinositol trisphosphate phosphatase activity(GO:0034594)
0.1 1.2 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.1 0.8 GO:0003999 adenine phosphoribosyltransferase activity(GO:0003999)
0.1 1.5 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.1 1.2 GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity(GO:0033926)
0.1 0.7 GO:0004567 beta-mannosidase activity(GO:0004567)
0.1 0.7 GO:0003917 DNA topoisomerase type I activity(GO:0003917)
0.1 0.5 GO:0009678 hydrogen-translocating pyrophosphatase activity(GO:0009678)
0.1 7.7 GO:0015171 amino acid transmembrane transporter activity(GO:0015171)
0.1 1.5 GO:0004743 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.1 1.6 GO:0035064 methylated histone binding(GO:0035064)
0.1 1.2 GO:0051117 ATPase binding(GO:0051117)
0.1 0.4 GO:0004075 biotin carboxylase activity(GO:0004075)
0.1 1.1 GO:0050373 UDP-arabinose 4-epimerase activity(GO:0050373)
0.1 0.4 GO:0003852 2-isopropylmalate synthase activity(GO:0003852)
0.1 5.4 GO:0044389 ubiquitin-like protein ligase binding(GO:0044389)
0.1 1.9 GO:0004713 protein tyrosine kinase activity(GO:0004713)
0.1 2.5 GO:0097602 cullin family protein binding(GO:0097602)
0.1 1.0 GO:0005384 manganese ion transmembrane transporter activity(GO:0005384)
0.1 0.7 GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides(GO:0016812)
0.1 0.4 GO:0035173 histone kinase activity(GO:0035173)
0.1 0.8 GO:0035198 miRNA binding(GO:0035198)
0.1 2.7 GO:0019199 transmembrane receptor protein kinase activity(GO:0019199)
0.1 5.3 GO:0003777 microtubule motor activity(GO:0003777)
0.1 2.7 GO:0015205 nucleobase transmembrane transporter activity(GO:0015205)
0.1 1.0 GO:0003746 translation elongation factor activity(GO:0003746)
0.1 0.7 GO:0043495 protein anchor(GO:0043495)
0.1 0.8 GO:0008169 C-methyltransferase activity(GO:0008169)
0.1 0.3 GO:0080042 ADP-glucose pyrophosphohydrolase activity(GO:0080042)
0.1 1.5 GO:0030276 clathrin binding(GO:0030276)
0.1 1.7 GO:0008143 poly(A) binding(GO:0008143)
0.1 5.0 GO:0004650 polygalacturonase activity(GO:0004650)
0.1 0.2 GO:0019781 NEDD8 activating enzyme activity(GO:0019781)
0.1 1.4 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.1 9.1 GO:0003779 actin binding(GO:0003779)
0.1 1.7 GO:0015562 efflux transmembrane transporter activity(GO:0015562)
0.1 0.1 GO:0008469 histone-arginine N-methyltransferase activity(GO:0008469)
0.1 0.4 GO:0030527 structural constituent of chromatin(GO:0030527)
0.1 0.5 GO:0045182 translation regulator activity(GO:0045182) translation regulator activity, nucleic acid binding(GO:0090079)
0.1 5.3 GO:0051082 unfolded protein binding(GO:0051082)
0.1 0.3 GO:0005354 galactose transmembrane transporter activity(GO:0005354)
0.1 0.6 GO:0032041 NAD-dependent histone deacetylase activity(GO:0017136) histone deacetylase activity (H3-K14 specific)(GO:0031078) NAD-dependent histone deacetylase activity (H3-K14 specific)(GO:0032041) NAD-dependent protein deacetylase activity(GO:0034979)
0.1 0.2 GO:0000170 sphingosine hydroxylase activity(GO:0000170)
0.1 0.5 GO:0004003 ATP-dependent DNA helicase activity(GO:0004003) ATP-dependent helicase activity(GO:0008026) single-stranded DNA-dependent ATP-dependent DNA helicase activity(GO:0017116) single-stranded DNA-dependent ATPase activity(GO:0043142) purine NTP-dependent helicase activity(GO:0070035)
0.1 0.2 GO:1990247 N6-methyladenosine-containing RNA binding(GO:1990247)
0.1 0.4 GO:0015369 calcium:proton antiporter activity(GO:0015369) metal ion:proton antiporter activity(GO:0051139)
0.1 0.9 GO:0008641 small protein activating enzyme activity(GO:0008641)
0.1 0.4 GO:0004652 polynucleotide adenylyltransferase activity(GO:0004652)
0.1 0.3 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.1 0.2 GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity(GO:0033925)
0.1 6.0 GO:0004601 peroxidase activity(GO:0004601)
0.1 1.3 GO:0004402 histone acetyltransferase activity(GO:0004402) peptide-lysine-N-acetyltransferase activity(GO:0061733)
0.1 0.2 GO:0015930 glutamate synthase activity(GO:0015930) glutamate synthase (NADH) activity(GO:0016040) glutamate synthase activity, NAD(P)H as acceptor(GO:0045181)
0.1 1.7 GO:0043022 ribosome binding(GO:0043022)
0.1 2.8 GO:0008173 RNA methyltransferase activity(GO:0008173)
0.1 0.3 GO:0031492 nucleosomal DNA binding(GO:0031492)
0.1 1.9 GO:0009975 cyclase activity(GO:0009975)
0.1 0.5 GO:0035252 UDP-xylosyltransferase activity(GO:0035252)
0.1 2.7 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.1 2.0 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.1 3.2 GO:0043130 ubiquitin-like protein binding(GO:0032182) ubiquitin binding(GO:0043130)
0.1 0.4 GO:0070300 phosphatidic acid binding(GO:0070300)
0.0 0.3 GO:0016151 nickel cation binding(GO:0016151)
0.0 12.8 GO:0003735 structural constituent of ribosome(GO:0003735)
0.0 0.1 GO:0003995 acyl-CoA dehydrogenase activity(GO:0003995)
0.0 0.3 GO:0000339 RNA cap binding(GO:0000339)
0.0 0.5 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.0 0.4 GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity(GO:0000285)
0.0 0.5 GO:0008453 alanine-glyoxylate transaminase activity(GO:0008453)
0.0 2.0 GO:0003743 translation initiation factor activity(GO:0003743)
0.0 1.6 GO:0016881 acid-amino acid ligase activity(GO:0016881)
0.0 2.6 GO:0061631 ubiquitin conjugating enzyme activity(GO:0061631)
0.0 8.9 GO:0042803 protein homodimerization activity(GO:0042803)
0.0 0.6 GO:0004312 fatty acid synthase activity(GO:0004312)
0.0 0.5 GO:0031490 chromatin DNA binding(GO:0031490)
0.0 0.6 GO:0052742 phosphatidylinositol kinase activity(GO:0052742)
0.0 2.1 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.0 0.4 GO:0008878 glucose-1-phosphate adenylyltransferase activity(GO:0008878)
0.0 7.7 GO:0008289 lipid binding(GO:0008289)
0.0 1.5 GO:0015035 protein disulfide oxidoreductase activity(GO:0015035)
0.0 0.3 GO:0004143 diacylglycerol kinase activity(GO:0004143)
0.0 1.2 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.0 0.8 GO:0008378 galactosyltransferase activity(GO:0008378)
0.0 0.1 GO:0019136 deoxynucleoside kinase activity(GO:0019136)
0.0 2.3 GO:0036459 thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459)
0.0 0.6 GO:0003725 double-stranded RNA binding(GO:0003725)
0.0 0.5 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.0 3.4 GO:0003682 chromatin binding(GO:0003682)
0.0 0.7 GO:0016168 chlorophyll binding(GO:0016168)
0.0 0.4 GO:0003996 acyl-CoA ligase activity(GO:0003996) long-chain fatty acid-CoA ligase activity(GO:0004467) decanoate--CoA ligase activity(GO:0102391)
0.0 1.0 GO:0004888 transmembrane signaling receptor activity(GO:0004888)
0.0 4.2 GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709)
0.0 1.0 GO:0004707 MAP kinase activity(GO:0004707)
0.0 2.2 GO:0046982 protein heterodimerization activity(GO:0046982)
0.0 2.9 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.0 0.2 GO:0051087 chaperone binding(GO:0051087)
0.0 1.5 GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides(GO:0016811)
0.0 0.2 GO:0004337 geranyltranstransferase activity(GO:0004337)
0.0 3.2 GO:0003924 GTPase activity(GO:0003924)
0.0 0.3 GO:0004708 MAP kinase kinase activity(GO:0004708)
0.0 2.8 GO:0004721 phosphoprotein phosphatase activity(GO:0004721)
0.0 0.2 GO:0017169 CDP-alcohol phosphatidyltransferase activity(GO:0017169)
0.0 0.9 GO:0005484 SNAP receptor activity(GO:0005484)
0.0 0.9 GO:0070008 serine-type carboxypeptidase activity(GO:0004185) serine-type exopeptidase activity(GO:0070008)
0.0 0.5 GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds(GO:0016799)
0.0 0.6 GO:0033612 receptor serine/threonine kinase binding(GO:0033612)
0.0 0.1 GO:0043878 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity(GO:0043878)
0.0 0.7 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899)
0.0 0.6 GO:0005198 structural molecule activity(GO:0005198)
0.0 0.0 GO:0004140 dephospho-CoA kinase activity(GO:0004140)
0.0 0.5 GO:0080030 methyl indole-3-acetate esterase activity(GO:0080030)
0.0 0.2 GO:0016251 obsolete general RNA polymerase II transcription factor activity(GO:0016251)
0.0 0.3 GO:0003713 transcription coactivator activity(GO:0003713)
0.0 15.6 GO:0001071 nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700)
0.0 0.0 GO:0015245 fatty acid transporter activity(GO:0015245)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.0 ST PAC1 RECEPTOR PATHWAY PAC1 Receptor Pathway
0.3 2.4 ST FAS SIGNALING PATHWAY Fas Signaling Pathway
0.3 0.9 PID NFAT TFPATHWAY Calcineurin-regulated NFAT-dependent transcription in lymphocytes
0.3 1.0 PID HIF1A PATHWAY Hypoxic and oxygen homeostasis regulation of HIF-1-alpha
0.2 1.0 PID HES HEY PATHWAY Notch-mediated HES/HEY network
0.2 0.5 PID AVB3 OPN PATHWAY Osteopontin-mediated events
0.2 0.6 ST WNT BETA CATENIN PATHWAY Wnt/beta-catenin Pathway
0.1 1.6 PID ERBB1 DOWNSTREAM PATHWAY ErbB1 downstream signaling
0.1 0.5 PID KIT PATHWAY Signaling events mediated by Stem cell factor receptor (c-Kit)
0.1 0.2 PID DELTA NP63 PATHWAY Validated transcriptional targets of deltaNp63 isoforms
0.1 0.9 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network
0.0 0.1 PID ARF6 DOWNSTREAM PATHWAY Arf6 downstream pathway
0.0 0.1 PID MYC REPRESS PATHWAY Validated targets of C-MYC transcriptional repression

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.3 REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION Genes involved in Amino acid synthesis and interconversion (transamination)
0.3 1.0 REACTOME REGULATION OF HYPOXIA INDUCIBLE FACTOR HIF BY OXYGEN Genes involved in Regulation of Hypoxia-inducible Factor (HIF) by Oxygen
0.3 2.0 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport
0.3 1.6 REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT Genes involved in SLC-mediated transmembrane transport
0.3 0.8 REACTOME REGULATION OF INSULIN SECRETION Genes involved in Regulation of Insulin Secretion
0.2 3.4 REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION Genes involved in Factors involved in megakaryocyte development and platelet production
0.1 1.8 REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS Genes involved in ABCA transporters in lipid homeostasis
0.1 0.6 REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES Genes involved in Antiviral mechanism by IFN-stimulated genes
0.1 0.7 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
0.1 0.5 REACTOME SIGNALING BY SCF KIT Genes involved in Signaling by SCF-KIT
0.1 0.5 REACTOME SIGNALING BY PDGF Genes involved in Signaling by PDGF
0.1 1.4 REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX Genes involved in Formation of the ternary complex, and subsequently, the 43S complex
0.0 0.1 REACTOME MRNA PROCESSING Genes involved in mRNA Processing
0.0 0.1 REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES Genes involved in Metabolism of amino acids and derivatives