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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT4G38000

Z-value: 1.28

Transcription factors associated with AT4G38000

Gene Symbol Gene ID Gene Info
AT4G38000
AT4G38000 DNA binding with one finger 4.7

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
DOF4.7arTal_v1_Chr4_+_17858351_17858351-0.214.8e-01Click!

Activity profile of AT4G38000 motif

Sorted Z-values of AT4G38000 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr1_+_3019639 2.10 AT1G09350.1
GolS3
galactinol synthase 3
Chr1_+_5872024 2.09 AT1G17180.1
GSTU25
glutathione S-transferase TAU 25
Chr5_+_21240717 2.04 AT5G52310.1
LTI78
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
Chr1_+_3020221 1.98 AT1G09350.2
GolS3
galactinol synthase 3
Chr2_+_12004658 1.88 AT2G28160.1
AT2G28160.2
FRU
FER-like regulator of iron uptake
Chr5_-_17199793 1.84 AT5G42900.1
AT5G42900.3
AT5G42900.2
COR27
cold regulated protein 27
Chr2_+_538250 1.77 AT2G02120.1
PDF2.1
Scorpion toxin-like knottin superfamily protein
Chr1_-_9275193 1.75 AT1G26790.1
AT1G26790
Dof-type zinc finger DNA-binding family protein
Chr3_+_2441565 1.65 AT3G07650.4
AT3G07650.1
AT3G07650.3
AT3G07650.2
COL9
CONSTANS-like 9
Chr3_+_5025383 1.58 AT3G14940.2
PPC3
phosphoenolpyruvate carboxylase 3
Chr3_+_5025184 1.56 AT3G14940.1
PPC3
phosphoenolpyruvate carboxylase 3
Chr4_+_8646150 1.54 AT4G15160.2
AT4G15160.1
AT4G15160
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr4_+_11753842 1.44 AT4G22212.1
AT4G22212
defensin-like protein
Chr5_-_5692920 1.42 AT5G17300.2
AT5G17300.1
RVE1
Homeodomain-like superfamily protein
Chr4_+_12827856 1.40 AT4G24960.1
AT4G24960.3
AT4G24960.2
HVA22D
HVA22 homologue D
Chr1_-_1248826 1.39 AT1G04570.2
AT1G04570.1
AT1G04570
Major facilitator superfamily protein
Chr1_-_27498062 1.39 AT1G73120.1
AT1G73120
F-box/RNI superfamily protein
Chr2_+_13987669 1.39 AT2G32960.1
PFA-DSP2
Phosphotyrosine protein phosphatases superfamily protein
Chr5_-_7054281 1.37 AT5G20830.3
SUS1
sucrose synthase 1
Chr5_-_7054713 1.35 AT5G20830.1
SUS1
sucrose synthase 1
Chr5_-_7055398 1.32 AT5G20830.2
SUS1
sucrose synthase 1
Chr2_-_12343443 1.31 AT2G28780.1
AT2G28780
P-hydroxybenzoic acid efflux pump subunit
Chr1_-_26163715 1.25 AT1G69570.1
AT1G69570
Dof-type zinc finger DNA-binding family protein
Chr5_+_4768263 1.23 AT5G14760.1
AO
L-aspartate oxidase
Chr4_-_1046993 1.23 AT4G02380.2
AT4G02380.1
AT4G02380.3
SAG21
senescence-associated gene 21
Chr1_+_16263805 1.23 AT1G43160.1
RAP2.6
related to AP2 6
Chr3_-_2569700 1.19 AT3G08040.2
AT3G08040.1
FRD3
MATE efflux family protein
Chr1_-_8189220 1.16 AT1G23090.4
AT1G23090.1
AT1G23090.3
AT1G23090.2
AST91
sulfate transporter 91
Chr4_-_16644928 1.16 AT4G34950.1
AT4G34950
Major facilitator superfamily protein
Chr2_+_528179 1.15 AT2G02100.1
LCR69
low-molecular-weight cysteine-rich 69
Chr2_-_18821889 1.13 AT2G45680.1
TCP9
TCP family transcription factor
Chr3_-_10599042 1.11 AT3G28345.1
ABCB15
ABC transporter family protein
Chr1_+_23168767 1.10 AT1G62570.1
FMO GS-OX4
flavin-monooxygenase glucosinolate S-oxygenase 4
Chr1_+_1520278 1.09 AT1G05240.1
AT1G05240
Peroxidase superfamily protein
Chr3_-_23046153 1.07 AT3G62270.1
AT3G62270
HCO3- transporter family
Chr3_+_8172479 1.06 AT3G23000.1
CIPK7
CBL-interacting protein kinase 7
Chr4_-_2413447 1.05 AT4G04745.1
AT4G04745
hypothetical protein
Chr5_+_15878698 1.04 AT5G39660.1
AT5G39660.3
AT5G39660.2
CDF2
cycling DOF factor 2
Chr5_-_3728726 1.04 AT5G11590.1
TINY2
Integrase-type DNA-binding superfamily protein
Chr5_+_5092140 1.02 AT5G15650.1
RGP2
reversibly glycosylated polypeptide 2
Chr3_-_21097481 1.00 AT3G57010.1
AT3G57010
Calcium-dependent phosphotriesterase superfamily protein
Chr2_-_12799441 1.00 AT2G29995.1
AT2G29995
PSY3-like protein
Chr1_+_17385707 0.99 AT1G47400.1
AT1G47400
hypothetical protein
Chr1_+_25701770 0.98 AT1G68500.1
AT1G68500
hypothetical protein
Chr1_-_10475969 0.97 AT1G29920.1
CAB2
chlorophyll A/B-binding protein 2
Chr5_-_19648362 0.96 AT5G48490.1
AT5G48490
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr4_-_18206684 0.96 AT4G39070.1
BZS1
B-box zinc finger family protein
Chr1_+_7481184 0.96 AT1G21360.2
AT1G21360.1
AT1G21360.3
GLTP2
glycolipid transfer protein 2
Chr1_-_18753941 0.96 AT1G50630.1
AT1G50630.2
AT1G50630
extracellular ligand-gated ion channel protein (DUF3537)
Chr5_-_17022723 0.95 AT5G42570.1
AT5G42570
B-cell receptor-associated 31-like protein
Chr5_+_15543115 0.95 AT5G38820.1
AT5G38820.2
AT5G38820
Transmembrane amino acid transporter family protein
Chr3_-_489467 0.94 AT3G02380.1
COL2
CONSTANS-like 2
Chr1_-_6074525 0.94 AT1G17665.1
AT1G17665
CA-responsive protein
Chr1_+_1425539 0.94 AT1G05000.3
AT1G05000.1
AT1G05000.2
PFA-DSP1
Phosphotyrosine protein phosphatases superfamily protein
Chr5_-_1742161 0.93 AT5G05790.2
AT5G05790.1
AT5G05790
Duplicated homeodomain-like superfamily protein
Chr5_-_7820760 0.93 AT5G23220.1
NIC3
nicotinamidase 3
Chr5_+_2657054 0.92 AT5G08260.1
scpl35
serine carboxypeptidase-like 35
Chr3_+_16138375 0.92 AT3G44550.2
FAR5
fatty acid reductase 5
Chr3_+_1727151 0.91 AT3G05800.1
AIF1
AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1
Chr5_-_19977620 0.90 AT5G49280.1
AT5G49280
hydroxyproline-rich glycoprotein family protein
Chr1_-_18238497 0.90 AT1G49310.1
AT1G49310
transmembrane protein
Chr1_+_18198227 0.90 AT1G49200.1
AT1G49200
RING/U-box superfamily protein
Chr4_+_13074090 0.90 AT4G25630.1
FIB2
fibrillarin 2
Chr5_+_22808641 0.90 AT5G56320.2
AT5G56320.1
AT5G56320.3
EXPA14
expansin A14
Chr1_-_22871298 0.89 AT1G61890.3
AT1G61890.1
AT1G61890.2
AT1G61890
MATE efflux family protein
Chr3_-_21499676 0.89 AT3G58060.2
AT3G58060
Cation efflux family protein
Chr5_+_7328870 0.89 AT5G22100.1
AT5G22100
RNA cyclase family protein
Chr5_+_23337832 0.88 AT5G57625.1
AT5G57625
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Chr1_-_10184512 0.88 AT1G29160.1
AT1G29160
Dof-type zinc finger DNA-binding family protein
Chr1_+_7404328 0.88 AT1G21140.1
AT1G21140
Vacuolar iron transporter (VIT) family protein
Chr1_-_9890875 0.87 AT1G28290.2
AT1G28290.1
AGP31
arabinogalactan protein 31
Chr4_+_14762819 0.87 AT4G30170.1
AT4G30170
Peroxidase family protein
Chr5_+_463073 0.87 AT5G02260.1
EXPA9
expansin A9
Chr2_-_15036556 0.87 AT2G35770.1
scpl28
serine carboxypeptidase-like 28
Chr3_-_21499943 0.87 AT3G58060.1
AT3G58060
Cation efflux family protein
Chr1_-_3880391 0.86 AT1G11545.1
XTH8
xyloglucan endotransglucosylase/hydrolase 8
Chr3_+_5720941 0.85 AT3G16800.5
AT3G16800.4
AT3G16800.2
AT3G16800.6
AT3G16800.1
AT3G16800
Protein phosphatase 2C family protein
Chr3_+_16137576 0.84 AT3G44550.1
FAR5
fatty acid reductase 5
Chr5_-_2958971 0.84 AT5G09520.1
PELPK2
hydroxyproline-rich glycoprotein family protein
Chr4_+_596397 0.84 AT4G01440.3
AT4G01440.2
AT4G01440.1
AT4G01440.4
UMAMIT31
nodulin MtN21 /EamA-like transporter family protein
Chr3_+_9475350 0.84 AT3G25890.2
AT3G25890.1
CRF11
Integrase-type DNA-binding superfamily protein
Chr5_+_22492892 0.82 AT5G55530.2
AT5G55530.1
AT5G55530
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr1_-_22280593 0.82 AT1G60470.1
GolS4
galactinol synthase 4
Chr5_+_9873067 0.81 AT5G27850.1
AT5G27850.2
AT5G27850
Ribosomal protein L18e/L15 superfamily protein
Chr4_+_17639 0.80 AT4G00050.1
AT4G00050.3
AT4G00050.2
UNE10
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr4_+_10498748 0.80 AT4G19200.1
AT4G19200
proline-rich family protein
Chr5_+_22967891 0.80 AT5G56790.1
AT5G56790
Protein kinase superfamily protein
Chr3_+_5535124 0.80 AT3G16330.1
AT3G16330
Avr9/Cf-9 rapidly elicited protein
Chr1_-_11377885 0.79 AT1G31770.1
ABCG14
ATP-binding cassette 14
Chr3_-_20864594 0.79 AT3G56240.2
AT3G56240.1
AT3G56240.3
CCH
copper chaperone
Chr3_+_11810726 0.79 AT3G30180.1
BR6OX2
brassinosteroid-6-oxidase 2
Chr5_-_23281271 0.79 AT5G57480.1
AT5G57480
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_+_19116719 0.79 AT5G47060.1
AT5G47060.2
AT5G47060
hypothetical protein (DUF581)
Chr2_+_18061716 0.78 AT2G43500.1
AT2G43500.3
AT2G43500.4
AT2G43500.5
AT2G43500.6
AT2G43500.7
AT2G43500.2
AT2G43500.8
AT2G43500
Plant regulator RWP-RK family protein
Chr5_-_497372 0.77 AT5G02350.1
AT5G02350
Cysteine/Histidine-rich C1 domain family protein
Chr1_+_25508639 0.77 AT1G68050.1
FKF1
flavin-binding, kelch repeat, f box 1
Chr1_+_18416474 0.77 AT1G49760.2
AT1G49760.1
PAB8
poly(A) binding protein 8
Chr1_-_19888328 0.77 AT1G53310.3
AT1G53310.1
AT1G53310.2
PPC1
phosphoenolpyruvate carboxylase 1
Chr4_-_10176638 0.77 AT4G18422.1
AT4G18422
transmembrane protein
Chr1_-_11719988 0.77 AT1G32450.1
NRT1.5
nitrate transporter 1.5
Chr5_-_6968033 0.76 AT5G20600.1
AT5G20600
ribosomal RNA processing-like protein
Chr5_+_22493103 0.76 AT5G55530.3
AT5G55530
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr2_+_13580371 0.76 AT2G31940.1
AT2G31940
oxidoreductase/transition metal ion-binding protein
Chr5_-_25866972 0.76 AT5G64700.2
AT5G64700.1
UMAMIT21
nodulin MtN21 /EamA-like transporter family protein
Chr4_-_682601 0.76 AT4G01575.1
AT4G01575
serine protease inhibitor, Kazal-type family protein
Chr1_+_4105223 0.76 AT1G12110.1
NRT1.1
nitrate transporter 1.1
Chr4_-_7417873 0.76 AT4G12510.1
AT4G12510
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr2_+_8256921 0.76 AT2G19060.1
AT2G19060
SGNH hydrolase-type esterase superfamily protein
Chr3_-_20939631 0.76 AT3G56480.1
AT3G56480
myosin heavy chain-like protein
Chr2_-_7757875 0.75 AT2G17840.2
AT2G17840.1
ERD7
Senescence/dehydration-associated protein-like protein
Chr5_+_23100516 0.75 AT5G57090.1
AT5G57090.2
EIR1
Auxin efflux carrier family protein
Chr3_-_7457393 0.75 AT3G21240.2
AT3G21240.1
AT3G21240.3
4CL2
4-coumarate:CoA ligase 2
Chr5_+_25064793 0.75 AT5G62420.1
AT5G62420
NAD(P)-linked oxidoreductase superfamily protein
Chr1_-_18124289 0.75 AT1G49000.1
AT1G49000
transmembrane protein
Chr5_-_22255663 0.74 AT5G54790.1
AT5G54790.2
AT5G54790
CTD small phosphatase-like protein
Chr4_-_11965684 0.74 AT4G22770.2
AT4G22770.1
AT4G22770
AT hook motif DNA-binding family protein
Chr1_+_28829243 0.74 AT1G76800.1
AT1G76800
Vacuolar iron transporter (VIT) family protein
Chr2_-_16804823 0.74 AT2G40230.1
AT2G40230
HXXXD-type acyl-transferase family protein
Chr5_-_22680152 0.73 AT5G56000.1
Hsp81.4
HEAT SHOCK PROTEIN 81.4
Chr5_+_5899046 0.73 AT5G17850.2
AT5G17850
Sodium/calcium exchanger family protein
Chr3_+_8780238 0.73 AT3G24240.1
AT3G24240
Leucine-rich repeat receptor-like protein kinase family protein
Chr3_-_5148340 0.73 AT3G15300.1
AT3G15300
VQ motif-containing protein
Chr3_-_4834015 0.72 AT3G14440.1
NCED3
nine-cis-epoxycarotenoid dioxygenase 3
Chr5_-_24559879 0.72 AT5G61020.2
AT5G61020.1
ECT3
evolutionarily conserved C-terminal region 3
Chr5_-_10092686 0.72 AT5G28080.7
AT5G28080.1
AT5G28080.6
AT5G28080.2
AT5G28080.5
AT5G28080.3
AT5G28080.4
AT5G28080.8
WNK9
Protein kinase superfamily protein
Chr1_-_12745748 0.71 AT1G34760.1
AT1G34760.2
GRF11
general regulatory factor 11
Chr3_+_270221 0.71 AT3G01750.1
AT3G01750.2
AT3G01750
Ankyrin repeat family protein
Chr5_+_6673874 0.71 AT5G19740.1
AT5G19740
Peptidase M28 family protein
Chr2_+_18727504 0.70 AT2G45430.1
AHL22
AT-hook motif nuclear-localized protein 22
Chr5_-_4483247 0.70 AT5G13910.1
LEP
Integrase-type DNA-binding superfamily protein
Chr5_+_5898852 0.70 AT5G17850.1
AT5G17850
Sodium/calcium exchanger family protein
Chr3_-_18817405 0.70 AT3G50660.1
AT3G50660.2
DWF4
Cytochrome P450 superfamily protein
Chr1_+_23448812 0.70 AT1G63220.1
AT1G63220.2
AT1G63220
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr4_+_12949664 0.70 AT4G25310.2
AT4G25310.1
AT4G25310
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_-_11222789 0.69 AT1G31350.1
AT1G31350.2
KUF1
KAR-UP F-box 1
Chr1_+_9259432 0.69 AT1G26770.1
EXPA10
expansin A10
Chr1_+_2848149 0.69 AT1G08890.1
AT1G08890
Major facilitator superfamily protein
Chr3_-_10011712 0.69 AT3G27150.2
AT3G27150.1
AT3G27150
Galactose oxidase/kelch repeat superfamily protein
Chr5_-_1994824 0.69 AT5G06530.2
AT5G06530.3
AT5G06530.4
AT5G06530.1
ABCG22
ABC-2 type transporter family protein
Chr2_-_292624 0.69 AT2G01660.2
AT2G01660.3
AT2G01660.1
PDLP6
plasmodesmata-located protein 6
Chr1_+_8046073 0.69 AT1G22730.1
AT1G22730
MA3 domain-containing protein
Chr5_-_8167776 0.69 AT5G24140.1
SQP2
squalene monooxygenase 2
Chr5_+_19620267 0.69 AT5G48410.4
AT5G48410.3
AT5G48410.2
AT5G48410.1
GLR1.3
glutamate receptor 1.3
Chr5_+_13761823 0.68 AT5G35580.2
AT5G35580.1
AT5G35580
Protein kinase superfamily protein
Chr3_+_9003569 0.68 AT3G24660.1
TMKL1
transmembrane kinase-like 1
Chr3_-_8865239 0.67 AT3G24420.1
AT3G24420
alpha/beta-Hydrolases superfamily protein
Chr1_-_28581315 0.67 AT1G76160.1
sks5
SKU5 similar 5
Chr5_+_4432297 0.67 AT5G13740.2
AT5G13740.1
ZIF1
zinc induced facilitator 1
Chr3_+_19648880 0.66 AT3G52990.2
AT3G52990
Pyruvate kinase family protein
Chr1_-_6904155 0.66 AT1G19880.1
AT1G19880
Regulator of chromosome condensation (RCC1) family protein
Chr3_+_19648711 0.66 AT3G52990.1
AT3G52990
Pyruvate kinase family protein
Chr3_-_21103719 0.66 AT3G57030.1
AT3G57030
Calcium-dependent phosphotriesterase superfamily protein
Chr3_+_5721225 0.66 AT3G16800.3
AT3G16800
Protein phosphatase 2C family protein
Chr1_+_17798979 0.66 AT1G48210.5
AT1G48210.7
AT1G48210.4
AT1G48210.6
AT1G48210
Protein kinase superfamily protein
Chr2_+_8183638 0.66 AT2G18890.1
AT2G18890.3
AT2G18890
Protein kinase superfamily protein
Chr2_-_17720366 0.66 AT2G42570.1
TBL39
TRICHOME BIREFRINGENCE-LIKE 39
Chr5_+_21401312 0.66 AT5G52820.1
AT5G52820
WD-40 repeat family protein / notchless protein
Chr1_+_21868190 0.66 AT1G59530.1
bZIP4
basic leucine-zipper 4
Chr3_+_18672906 0.65 AT3G50350.1
AT3G50350
membrane insertase, putative (DUF1685)
Chr5_-_8277406 0.65 AT5G24313.1
AT5G24313
transmembrane protein
Chr1_+_2688880 0.65 AT1G08500.1
ENODL18
early nodulin-like protein 18
Chr2_-_4305887 0.65 AT2G10931.1
AT2G10931
hypothetical protein
Chr5_-_24381599 0.65 AT5G60670.1
AT5G60670
Ribosomal protein L11 family protein
Chr4_+_16746525 0.65 AT4G35190.2
LOG5
Putative lysine decarboxylase family protein
Chr4_+_608454 0.65 AT4G01450.1
AT4G01450.4
AT4G01450.3
UMAMIT30
nodulin MtN21 /EamA-like transporter family protein
Chr5_-_24456115 0.65 AT5G60790.1
ABCF1
ABC transporter family protein
Chr3_+_6266946 0.65 AT3G18280.2
AT3G18280.1
AT3G18280
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_218834 0.65 AT1G01600.1
CYP86A4
cytochrome P450, family 86, subfamily A, polypeptide 4
Chr4_-_10934225 0.65 AT4G20240.1
AT4G20240.2
CYP71A27
cytochrome P450, family 71, subfamily A, polypeptide 27
Chr5_-_4915976 0.65 AT5G15150.1
HB-3
homeobox 3
Chr2_-_8235440 0.65 AT2G18980.1
AT2G18980
Peroxidase superfamily protein
Chr3_+_22791898 0.65 AT3G61590.3
AT3G61590.2
AT3G61590.1
HWS
Galactose oxidase/kelch repeat superfamily protein
Chr5_-_21619281 0.65 AT5G53290.1
CRF3
cytokinin response factor 3
Chr3_-_7187521 0.65 AT3G20570.1
ENODL9
early nodulin-like protein 9
Chr3_+_5705541 0.64 AT3G16770.1
EBP
ethylene-responsive element binding protein
Chr3_+_19446637 0.64 AT3G52460.1
AT3G52460
hydroxyproline-rich glycoprotein family protein
Chr1_+_3888610 0.64 AT1G11580.2
AT1G11580.1
PMEPCRA
methylesterase PCR A
Chr2_-_15955752 0.63 AT2G38110.1
GPAT6
glycerol-3-phosphate acyltransferase 6
Chr3_-_20048190 0.63 AT3G54140.2
PTR1
peptide transporter 1
Chr1_+_3086101 0.63 AT1G09540.1
MYB61
myb domain protein 61
Chr1_-_3029549 0.63 AT1G09380.1
UMAMIT25
nodulin MtN21 /EamA-like transporter family protein
Chr1_-_5194214 0.63 AT1G15100.1
RHA2A
RING-H2 finger A2A
Chr3_+_9174398 0.63 AT3G25190.1
AT3G25190
Vacuolar iron transporter (VIT) family protein
Chr2_-_16757599 0.63 AT2G40120.1
AT2G40120
Protein kinase superfamily protein
Chr4_+_12264462 0.63 AT4G23500.1
AT4G23500
Pectin lyase-like superfamily protein
Chr5_-_9000345 0.62 AT5G25820.1
AT5G25820
Exostosin family protein
Chr5_+_20070489 0.62 AT5G49480.1
CP1
Ca2+-binding protein 1
Chr1_-_29965758 0.62 AT1G79630.2
AT1G79630.1
AT1G79630.7
AT1G79630.5
AT1G79630.4
AT1G79630.8
AT1G79630.3
AT1G79630.6
AT1G79630
Protein phosphatase 2C family protein
Chr2_+_18062044 0.62 AT2G43500.9
AT2G43500.11
AT2G43500.10
AT2G43500
Plant regulator RWP-RK family protein
Chr3_-_20048745 0.62 AT3G54140.1
PTR1
peptide transporter 1
Chr3_+_22630331 0.62 AT3G61150.1
HDG1
homeodomain GLABROUS 1
Chr3_-_1268350 0.62 AT3G04670.2
AT3G04670.1
WRKY39
WRKY DNA-binding protein 39
Chr2_+_18537177 0.62 AT2G44940.1
AT2G44940
Integrase-type DNA-binding superfamily protein
Chr5_+_17977172 0.62 AT5G44578.2
AT5G44578.1
AT5G44578
transmembrane protein
Chr3_+_18249663 0.62 AT3G49220.2
AT3G49220.3
AT3G49220.1
AT3G49220
Plant invertase/pectin methylesterase inhibitor superfamily
Chr5_+_15208358 0.62 AT5G38110.1
ASF1B
anti- silencing function 1b
Chr3_+_8603212 0.62 AT3G23820.1
GAE6
UDP-D-glucuronate 4-epimerase 6
Chr1_+_22767617 0.61 AT1G61667.1
AT1G61667
serine protease, putative (Protein of unknown function, DUF538)
Chr4_+_16091535 0.61 AT4G33440.1
AT4G33440
Pectin lyase-like superfamily protein
Chr2_-_18620451 0.61 AT2G45160.1
HAM1
GRAS family transcription factor

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G38000

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 4.0 GO:0072708 response to sorbitol(GO:0072708)
0.4 1.8 GO:0019567 pentose biosynthetic process(GO:0019322) arabinose biosynthetic process(GO:0019567)
0.3 0.7 GO:0006063 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.3 1.3 GO:0010507 negative regulation of autophagy(GO:0010507)
0.3 0.3 GO:0071398 response to fatty acid(GO:0070542) cellular response to fatty acid(GO:0071398)
0.3 0.3 GO:0033478 UDP-rhamnose biosynthetic process(GO:0010253) UDP-rhamnose metabolic process(GO:0033478)
0.3 0.9 GO:0033967 box C/D snoRNA 3'-end processing(GO:0000494) peptidyl-glutamine methylation(GO:0018364) box C/D snoRNA metabolic process(GO:0033967) box C/D snoRNA processing(GO:0034963) histone glutamine methylation(GO:1990258)
0.3 0.9 GO:0015783 GDP-fucose transport(GO:0015783)
0.3 1.1 GO:0010480 microsporocyte differentiation(GO:0010480)
0.3 0.8 GO:0010184 cytokinin transport(GO:0010184)
0.2 1.2 GO:0015824 proline transport(GO:0015824)
0.2 0.9 GO:0015744 succinate transport(GO:0015744)
0.2 1.0 GO:0010080 regulation of floral meristem growth(GO:0010080)
0.2 6.0 GO:0006012 galactose metabolic process(GO:0006012)
0.2 1.2 GO:1900458 negative regulation of brassinosteroid mediated signaling pathway(GO:1900458)
0.2 3.3 GO:1902074 response to salt(GO:1902074)
0.2 1.0 GO:0035627 ceramide transport(GO:0035627)
0.2 0.4 GO:0002009 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.2 2.1 GO:0070973 protein localization to endoplasmic reticulum exit site(GO:0070973)
0.2 0.4 GO:0051512 positive regulation of unidimensional cell growth(GO:0051512)
0.2 1.1 GO:1900367 positive regulation of defense response to insect(GO:1900367)
0.2 0.5 GO:0045764 positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764)
0.2 0.5 GO:0006424 glutamyl-tRNA aminoacylation(GO:0006424) glutaminyl-tRNA aminoacylation(GO:0006425)
0.2 1.4 GO:0032950 regulation of beta-glucan metabolic process(GO:0032950) regulation of beta-glucan biosynthetic process(GO:0032951) regulation of cellulose biosynthetic process(GO:2001006)
0.2 1.3 GO:0010148 transpiration(GO:0010148)
0.2 1.2 GO:0043090 amino acid import(GO:0043090)
0.2 0.7 GO:0046477 glycosylceramide metabolic process(GO:0006677) glucosylceramide metabolic process(GO:0006678) glucosylceramide catabolic process(GO:0006680) glycosphingolipid metabolic process(GO:0006687) glycolipid catabolic process(GO:0019377) glycosylceramide catabolic process(GO:0046477) glycosphingolipid catabolic process(GO:0046479) ceramide catabolic process(GO:0046514)
0.2 0.3 GO:0015802 basic amino acid transport(GO:0015802)
0.2 1.7 GO:0048579 negative regulation of long-day photoperiodism, flowering(GO:0048579)
0.2 0.5 GO:0010372 positive regulation of gibberellin biosynthetic process(GO:0010372)
0.2 0.5 GO:0010541 acropetal auxin transport(GO:0010541)
0.2 2.9 GO:0006075 (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075)
0.2 0.6 GO:0030203 aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203)
0.1 0.4 GO:0009915 phloem sucrose loading(GO:0009915)
0.1 0.3 GO:1902446 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.1 0.7 GO:0009647 skotomorphogenesis(GO:0009647)
0.1 1.0 GO:0071588 hydrogen peroxide mediated signaling pathway(GO:0071588)
0.1 1.9 GO:0010315 auxin efflux(GO:0010315)
0.1 0.4 GO:0042539 hypotonic salinity response(GO:0042539)
0.1 0.5 GO:1905157 positive regulation of photosynthesis(GO:1905157)
0.1 0.5 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.1 1.3 GO:0009942 longitudinal axis specification(GO:0009942)
0.1 0.8 GO:0010508 positive regulation of autophagy(GO:0010508)
0.1 0.8 GO:0043328 protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway(GO:0043328)
0.1 0.8 GO:0071731 response to nitric oxide(GO:0071731)
0.1 0.3 GO:0010203 response to very low fluence red light stimulus(GO:0010203)
0.1 0.3 GO:0042908 xenobiotic transport(GO:0042908)
0.1 0.3 GO:1900111 positive regulation of histone H3-K9 dimethylation(GO:1900111)
0.1 1.6 GO:0035336 long-chain fatty-acyl-CoA metabolic process(GO:0035336)
0.1 0.5 GO:0080121 AMP transport(GO:0080121)
0.1 0.4 GO:0033306 phytol metabolic process(GO:0033306) fatty alcohol metabolic process(GO:1903173)
0.1 0.5 GO:0070125 mitochondrial translational elongation(GO:0070125)
0.1 0.4 GO:0043476 pigmentation(GO:0043473) pigment accumulation(GO:0043476) pigment accumulation in response to UV light(GO:0043478) pigment accumulation in tissues in response to UV light(GO:0043479) pigment accumulation in tissues(GO:0043480) anthocyanin accumulation in tissues in response to UV light(GO:0043481)
0.1 0.3 GO:0032260 response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance(GO:0032260)
0.1 0.8 GO:0010065 primary meristem tissue development(GO:0010065)
0.1 1.5 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.1 0.4 GO:0051175 negative regulation of ethylene biosynthetic process(GO:0010366) negative regulation of sulfur amino acid metabolic process(GO:0031336) negative regulation of cellular amine metabolic process(GO:0033239) negative regulation of cellular amino acid metabolic process(GO:0045763) negative regulation of sulfur metabolic process(GO:0051175) negative regulation of olefin metabolic process(GO:1900909) negative regulation of olefin biosynthetic process(GO:1900912)
0.1 0.2 GO:0048575 short-day photoperiodism(GO:0048572) short-day photoperiodism, flowering(GO:0048575)
0.1 0.4 GO:0033353 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
0.1 0.6 GO:0006336 DNA replication-independent nucleosome assembly(GO:0006336)
0.1 0.9 GO:0009819 drought recovery(GO:0009819)
0.1 0.3 GO:0035461 thiamine pyrophosphate transport(GO:0030974) vitamin transmembrane transport(GO:0035461) azole transport(GO:0045117)
0.1 0.5 GO:0046208 spermine catabolic process(GO:0046208)
0.1 0.2 GO:1902458 positive regulation of stomatal opening(GO:1902458)
0.1 1.4 GO:0050829 defense response to Gram-negative bacterium(GO:0050829)
0.1 1.9 GO:0055070 copper ion homeostasis(GO:0055070)
0.1 1.4 GO:0018231 peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231)
0.1 0.3 GO:1902290 positive regulation of defense response to oomycetes(GO:1902290)
0.1 0.4 GO:0045604 regulation of epithelial cell differentiation(GO:0030856) regulation of epidermal cell differentiation(GO:0045604) regulation of epidermis development(GO:0045682)
0.1 1.0 GO:0010158 abaxial cell fate specification(GO:0010158)
0.1 0.4 GO:0071277 cellular response to calcium ion(GO:0071277)
0.1 0.4 GO:0008272 sulfate transport(GO:0008272) embryonic root morphogenesis(GO:0010086)
0.1 0.3 GO:0060776 simple leaf morphogenesis(GO:0060776)
0.1 0.2 GO:0001560 regulation of cell growth by extracellular stimulus(GO:0001560)
0.1 0.4 GO:0046713 borate transport(GO:0046713)
0.1 1.6 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.1 0.2 GO:0048577 negative regulation of short-day photoperiodism, flowering(GO:0048577)
0.1 0.2 GO:0048833 inflorescence meristem growth(GO:0010450) specification of organ number(GO:0048832) specification of floral organ number(GO:0048833)
0.1 0.5 GO:0000379 tRNA-type intron splice site recognition and cleavage(GO:0000379)
0.1 0.3 GO:0048200 COPI-coated vesicle budding(GO:0035964) Golgi transport vesicle coating(GO:0048200) COPI coating of Golgi vesicle(GO:0048205)
0.1 0.6 GO:0019243 lactate metabolic process(GO:0006089) methylglyoxal metabolic process(GO:0009438) methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione(GO:0019243) ketone catabolic process(GO:0042182) methylglyoxal catabolic process(GO:0051596) methylglyoxal catabolic process to lactate(GO:0061727)
0.1 0.2 GO:0007019 microtubule depolymerization(GO:0007019)
0.1 0.4 GO:0000914 assembly of actomyosin apparatus involved in cytokinesis(GO:0000912) phragmoplast assembly(GO:0000914) assembly of actomyosin apparatus involved in mitotic cytokinesis(GO:1902407)
0.1 0.6 GO:0036388 pre-replicative complex assembly involved in nuclear cell cycle DNA replication(GO:0006267) pre-replicative complex assembly(GO:0036388) pre-replicative complex assembly involved in cell cycle DNA replication(GO:1902299)
0.1 0.4 GO:0030242 pexophagy(GO:0030242)
0.1 0.3 GO:0009660 amyloplast organization(GO:0009660)
0.1 0.2 GO:0007032 endosome organization(GO:0007032) SNARE complex assembly(GO:0035493)
0.1 3.7 GO:0006099 tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101)
0.1 0.2 GO:0017145 stem cell division(GO:0017145)
0.1 0.7 GO:0016121 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.1 0.2 GO:0010520 regulation of reciprocal meiotic recombination(GO:0010520) negative regulation of meiotic nuclear division(GO:0045835) negative regulation of meiotic cell cycle(GO:0051447)
0.1 1.0 GO:0032958 inositol phosphate biosynthetic process(GO:0032958)
0.1 0.3 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.1 1.7 GO:0006636 unsaturated fatty acid biosynthetic process(GO:0006636)
0.1 1.2 GO:0010030 positive regulation of seed germination(GO:0010030)
0.1 0.4 GO:0006564 L-serine biosynthetic process(GO:0006564)
0.1 2.3 GO:0010143 cutin biosynthetic process(GO:0010143)
0.1 0.3 GO:1900370 positive regulation of RNA interference(GO:1900370)
0.1 0.2 GO:0010394 homogalacturonan biosynthetic process(GO:0010289) homogalacturonan metabolic process(GO:0010394)
0.1 0.7 GO:1900056 negative regulation of leaf senescence(GO:1900056)
0.1 0.2 GO:0010434 bract morphogenesis(GO:0010433) bract formation(GO:0010434)
0.1 0.5 GO:0001678 cellular glucose homeostasis(GO:0001678)
0.1 0.2 GO:0031335 regulation of ethylene biosynthetic process(GO:0010364) regulation of sulfur amino acid metabolic process(GO:0031335) regulation of olefin metabolic process(GO:1900908) regulation of olefin biosynthetic process(GO:1900911)
0.1 0.3 GO:0006809 nitric oxide biosynthetic process(GO:0006809)
0.1 0.3 GO:0009557 antipodal cell differentiation(GO:0009557)
0.1 2.2 GO:2000028 regulation of photoperiodism, flowering(GO:2000028)
0.1 0.2 GO:1903513 retrograde protein transport, ER to cytosol(GO:0030970) endoplasmic reticulum to cytosol transport(GO:1903513)
0.1 0.6 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid(GO:0009961)
0.1 0.6 GO:0006656 phosphatidylcholine biosynthetic process(GO:0006656)
0.1 0.4 GO:0005513 detection of calcium ion(GO:0005513)
0.1 0.4 GO:0009855 determination of bilateral symmetry(GO:0009855)
0.1 0.9 GO:0048766 root hair initiation(GO:0048766)
0.1 1.0 GO:0009750 response to fructose(GO:0009750)
0.1 0.2 GO:0080036 regulation of cytokinin-activated signaling pathway(GO:0080036)
0.1 1.5 GO:0010305 leaf vascular tissue pattern formation(GO:0010305)
0.1 1.0 GO:0010072 primary shoot apical meristem specification(GO:0010072)
0.1 0.2 GO:0090548 response to nitrate starvation(GO:0090548)
0.1 0.4 GO:0031222 arabinan catabolic process(GO:0031222)
0.1 0.1 GO:0051574 positive regulation of histone H3-K9 methylation(GO:0051574)
0.1 1.2 GO:0006879 cellular iron ion homeostasis(GO:0006879)
0.1 0.6 GO:0006490 oligosaccharide-lipid intermediate biosynthetic process(GO:0006490)
0.1 0.7 GO:0051784 negative regulation of mitotic nuclear division(GO:0045839) negative regulation of nuclear division(GO:0051784)
0.1 0.6 GO:0010105 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.1 0.2 GO:0002184 cytoplasmic translational termination(GO:0002184)
0.1 0.7 GO:0000266 mitochondrial fission(GO:0000266)
0.1 0.2 GO:0010387 COP9 signalosome assembly(GO:0010387)
0.1 0.2 GO:0055073 cadmium ion homeostasis(GO:0055073)
0.1 0.3 GO:0007231 osmosensory signaling pathway(GO:0007231)
0.1 0.1 GO:0040019 positive regulation of embryonic development(GO:0040019)
0.1 0.2 GO:0031468 nuclear envelope reassembly(GO:0031468)
0.1 0.5 GO:0060359 response to ammonium ion(GO:0060359)
0.0 0.2 GO:1900384 regulation of flavonol biosynthetic process(GO:1900384)
0.0 0.4 GO:0006086 acetyl-CoA biosynthetic process from pyruvate(GO:0006086)
0.0 0.9 GO:0000373 Group II intron splicing(GO:0000373)
0.0 0.9 GO:0050821 protein stabilization(GO:0050821)
0.0 0.7 GO:0010600 regulation of auxin biosynthetic process(GO:0010600)
0.0 0.7 GO:0045824 negative regulation of innate immune response(GO:0045824)
0.0 0.1 GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway(GO:0071596)
0.0 0.4 GO:1901642 nucleoside transmembrane transport(GO:1901642)
0.0 0.3 GO:0010358 leaf shaping(GO:0010358)
0.0 0.2 GO:0010351 lithium ion transport(GO:0010351)
0.0 0.4 GO:0045836 positive regulation of meiotic nuclear division(GO:0045836)
0.0 1.6 GO:0070588 calcium ion transmembrane transport(GO:0070588)
0.0 0.2 GO:0015965 diadenosine polyphosphate metabolic process(GO:0015959) diadenosine tetraphosphate metabolic process(GO:0015965)
0.0 0.3 GO:0009643 photosynthetic acclimation(GO:0009643)
0.0 0.5 GO:0055069 zinc ion homeostasis(GO:0055069)
0.0 2.8 GO:0071383 brassinosteroid mediated signaling pathway(GO:0009742) steroid hormone mediated signaling pathway(GO:0043401) cellular response to steroid hormone stimulus(GO:0071383)
0.0 0.2 GO:2000736 regulation of stem cell population maintenance(GO:2000036) regulation of stem cell differentiation(GO:2000736)
0.0 0.2 GO:1901269 lipid A biosynthetic process(GO:0009245) lipid A metabolic process(GO:0046493) lipooligosaccharide metabolic process(GO:1901269) lipooligosaccharide biosynthetic process(GO:1901271)
0.0 0.2 GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091)
0.0 0.6 GO:0048359 mucilage metabolic process involved in seed coat development(GO:0048359)
0.0 2.1 GO:0048825 cotyledon development(GO:0048825)
0.0 0.2 GO:0051782 negative regulation of cell division(GO:0051782)
0.0 0.2 GO:0030308 negative regulation of cell growth(GO:0030308)
0.0 0.1 GO:1904580 regulation of intracellular mRNA localization(GO:1904580)
0.0 0.6 GO:0032544 plastid translation(GO:0032544)
0.0 0.4 GO:0045116 protein neddylation(GO:0045116)
0.0 0.7 GO:0002183 cytoplasmic translational initiation(GO:0002183)
0.0 0.2 GO:0016255 attachment of GPI anchor to protein(GO:0016255)
0.0 0.4 GO:0016973 poly(A)+ mRNA export from nucleus(GO:0016973)
0.0 0.9 GO:0009851 auxin biosynthetic process(GO:0009851)
0.0 0.5 GO:0080022 primary root development(GO:0080022)
0.0 0.4 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
0.0 0.2 GO:0042128 nitrate metabolic process(GO:0042126) nitrate assimilation(GO:0042128)
0.0 0.1 GO:0090392 regulation of multicellular organism growth(GO:0040014) sepal giant cell differentiation(GO:0090392)
0.0 1.6 GO:0009749 response to glucose(GO:0009749)
0.0 0.2 GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000479)
0.0 1.4 GO:0048506 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.0 1.1 GO:0010499 proteasomal ubiquitin-independent protein catabolic process(GO:0010499)
0.0 1.6 GO:0006413 translational initiation(GO:0006413)
0.0 0.4 GO:0018344 protein geranylgeranylation(GO:0018344)
0.0 0.9 GO:0030150 protein import into mitochondrial matrix(GO:0030150)
0.0 0.8 GO:0009959 negative gravitropism(GO:0009959)
0.0 0.1 GO:0010338 leaf formation(GO:0010338)
0.0 0.3 GO:0052324 plant-type cell wall cellulose biosynthetic process(GO:0052324)
0.0 0.2 GO:0042447 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.0 0.7 GO:0009638 phototropism(GO:0009638)
0.0 0.3 GO:1902170 cellular response to nitrate(GO:0071249) cellular response to reactive nitrogen species(GO:1902170)
0.0 0.5 GO:0015770 sucrose transport(GO:0015770)
0.0 0.1 GO:0031023 microtubule organizing center organization(GO:0031023)
0.0 0.2 GO:0000719 photoreactive repair(GO:0000719)
0.0 0.3 GO:0046085 adenosine metabolic process(GO:0046085)
0.0 0.5 GO:0055072 iron ion homeostasis(GO:0055072)
0.0 0.4 GO:0090158 endoplasmic reticulum membrane organization(GO:0090158)
0.0 0.2 GO:1902456 regulation of stomatal opening(GO:1902456)
0.0 0.1 GO:0034058 endosomal vesicle fusion(GO:0034058)
0.0 0.2 GO:0051014 actin filament severing(GO:0051014)
0.0 0.6 GO:0055075 potassium ion homeostasis(GO:0055075)
0.0 0.6 GO:0010214 seed coat development(GO:0010214)
0.0 0.3 GO:0050688 regulation of immune effector process(GO:0002697) regulation of defense response to virus(GO:0050688)
0.0 0.3 GO:0010115 regulation of abscisic acid biosynthetic process(GO:0010115)
0.0 0.1 GO:0009413 response to flooding(GO:0009413)
0.0 0.1 GO:0055078 sodium ion homeostasis(GO:0055078)
0.0 0.4 GO:0046520 sphingoid biosynthetic process(GO:0046520)
0.0 0.1 GO:0006097 glyoxylate cycle(GO:0006097)
0.0 0.7 GO:0010496 intercellular transport(GO:0010496)
0.0 0.5 GO:1900673 ethylene metabolic process(GO:0009692) ethylene biosynthetic process(GO:0009693) cellular alkene metabolic process(GO:0043449) alkene biosynthetic process(GO:0043450) olefin metabolic process(GO:1900673) olefin biosynthetic process(GO:1900674)
0.0 0.2 GO:0052546 cell wall pectin metabolic process(GO:0052546)
0.0 0.4 GO:0045927 positive regulation of growth(GO:0045927)
0.0 0.8 GO:0002237 response to molecule of bacterial origin(GO:0002237)
0.0 1.4 GO:0006664 glycolipid metabolic process(GO:0006664) liposaccharide metabolic process(GO:1903509)
0.0 0.6 GO:0033674 positive regulation of kinase activity(GO:0033674)
0.0 0.6 GO:0034394 protein localization to cell surface(GO:0034394) regulation of protein localization to cell surface(GO:2000008)
0.0 0.0 GO:2000068 regulation of defense response to insect(GO:2000068)
0.0 0.6 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.0 0.1 GO:0042989 sequestering of actin monomers(GO:0042989)
0.0 0.2 GO:0048629 trichome patterning(GO:0048629)
0.0 1.2 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.0 0.1 GO:0016099 monoterpenoid metabolic process(GO:0016098) monoterpenoid biosynthetic process(GO:0016099)
0.0 0.4 GO:0018401 protein hydroxylation(GO:0018126) peptidyl-proline hydroxylation to 4-hydroxy-L-proline(GO:0018401) 4-hydroxyproline metabolic process(GO:0019471) peptidyl-proline hydroxylation(GO:0019511)
0.0 0.7 GO:0009789 positive regulation of abscisic acid-activated signaling pathway(GO:0009789) positive regulation of response to alcohol(GO:1901421)
0.0 0.3 GO:0009554 megasporogenesis(GO:0009554)
0.0 0.1 GO:0019401 alditol biosynthetic process(GO:0019401)
0.0 0.1 GO:0035865 response to potassium ion(GO:0035864) cellular response to potassium ion(GO:0035865)
0.0 0.7 GO:0009691 cytokinin biosynthetic process(GO:0009691)
0.0 1.1 GO:0045036 protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596)
0.0 0.1 GO:0010161 red light signaling pathway(GO:0010161)
0.0 0.1 GO:0080009 mRNA methylation(GO:0080009)
0.0 0.2 GO:0010088 phloem development(GO:0010088)
0.0 0.1 GO:0044154 histone H3-K14 acetylation(GO:0044154)
0.0 0.4 GO:0007008 outer mitochondrial membrane organization(GO:0007008) protein import into mitochondrial outer membrane(GO:0045040)
0.0 0.2 GO:0009090 homoserine biosynthetic process(GO:0009090)
0.0 0.1 GO:0046786 viral replication complex formation and maintenance(GO:0046786)
0.0 0.4 GO:0009098 leucine biosynthetic process(GO:0009098)
0.0 0.5 GO:0006914 autophagy(GO:0006914)
0.0 0.3 GO:0043248 proteasome assembly(GO:0043248)
0.0 0.3 GO:0051260 protein homooligomerization(GO:0051260)
0.0 0.3 GO:0006626 protein targeting to mitochondrion(GO:0006626)
0.0 0.1 GO:0048462 carpel formation(GO:0048462)
0.0 0.1 GO:0006855 drug transmembrane transport(GO:0006855) tetracycline transport(GO:0015904) antibiotic transport(GO:0042891)
0.0 1.3 GO:0042538 hyperosmotic salinity response(GO:0042538)
0.0 0.2 GO:0006183 GTP biosynthetic process(GO:0006183)
0.0 0.6 GO:0009395 phospholipid catabolic process(GO:0009395)
0.0 0.1 GO:1901537 positive regulation of DNA demethylation(GO:1901537)
0.0 0.2 GO:0034502 protein localization to chromosome(GO:0034502) centromere complex assembly(GO:0034508)
0.0 0.3 GO:0006108 malate metabolic process(GO:0006108)
0.0 0.1 GO:0010495 long-distance posttranscriptional gene silencing(GO:0010495)
0.0 0.2 GO:2000033 regulation of seed dormancy process(GO:2000033)
0.0 0.8 GO:0016128 phytosteroid metabolic process(GO:0016128) brassinosteroid metabolic process(GO:0016131)
0.0 0.1 GO:0000082 G1/S transition of mitotic cell cycle(GO:0000082)
0.0 0.4 GO:0006270 DNA replication initiation(GO:0006270)
0.0 0.2 GO:0010078 maintenance of root meristem identity(GO:0010078)
0.0 0.2 GO:0002221 pattern recognition receptor signaling pathway(GO:0002221) immune response-activating signal transduction(GO:0002757) innate immune response-activating signal transduction(GO:0002758)
0.0 1.2 GO:0048767 root hair elongation(GO:0048767)
0.0 0.2 GO:0000919 cell plate assembly(GO:0000919)
0.0 0.2 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.0 0.4 GO:0008356 asymmetric cell division(GO:0008356)
0.0 0.1 GO:0006386 termination of RNA polymerase III transcription(GO:0006386)
0.0 0.2 GO:1990937 xylan acetylation(GO:1990937)
0.0 0.8 GO:0010286 heat acclimation(GO:0010286)
0.0 0.1 GO:0010424 DNA methylation on cytosine within a CG sequence(GO:0010424)
0.0 0.3 GO:0048574 long-day photoperiodism, flowering(GO:0048574)
0.0 0.9 GO:0034605 cellular response to heat(GO:0034605)
0.0 0.2 GO:0046471 phosphatidylglycerol biosynthetic process(GO:0006655) phosphatidylglycerol metabolic process(GO:0046471)
0.0 0.1 GO:0080183 response to photooxidative stress(GO:0080183)
0.0 0.3 GO:0046417 chorismate metabolic process(GO:0046417)
0.0 0.7 GO:0045489 pectin biosynthetic process(GO:0045489)
0.0 0.2 GO:2000122 negative regulation of stomatal complex development(GO:2000122)
0.0 0.2 GO:0046513 ceramide biosynthetic process(GO:0046513)
0.0 0.3 GO:0031109 microtubule polymerization or depolymerization(GO:0031109)
0.0 0.9 GO:0006757 glycolytic process(GO:0006096) ATP generation from ADP(GO:0006757) purine nucleoside diphosphate metabolic process(GO:0009135) purine ribonucleoside diphosphate metabolic process(GO:0009179) ADP metabolic process(GO:0046031)
0.0 0.6 GO:0010119 regulation of stomatal movement(GO:0010119)
0.0 0.1 GO:0071108 protein K48-linked deubiquitination(GO:0071108)
0.0 0.5 GO:0051225 spindle assembly(GO:0051225)
0.0 0.2 GO:0009861 jasmonic acid and ethylene-dependent systemic resistance(GO:0009861)
0.0 0.1 GO:0040020 regulation of meiotic nuclear division(GO:0040020)
0.0 0.1 GO:1990066 nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066)
0.0 0.7 GO:0010431 seed maturation(GO:0010431)
0.0 0.1 GO:0015969 guanosine tetraphosphate metabolic process(GO:0015969) purine ribonucleoside bisphosphate metabolic process(GO:0034035)
0.0 0.8 GO:0006897 endocytosis(GO:0006897)
0.0 0.1 GO:0009954 proximal/distal pattern formation(GO:0009954)
0.0 0.7 GO:0009853 photorespiration(GO:0009853)
0.0 0.5 GO:0035195 gene silencing by miRNA(GO:0035195)
0.0 0.1 GO:0010120 camalexin biosynthetic process(GO:0010120) camalexin metabolic process(GO:0052317)
0.0 0.2 GO:0015780 nucleotide-sugar transport(GO:0015780)
0.0 0.4 GO:0030004 cellular monovalent inorganic cation homeostasis(GO:0030004)
0.0 0.2 GO:0010039 response to iron ion(GO:0010039)
0.0 13.2 GO:0006468 protein phosphorylation(GO:0006468)
0.0 0.2 GO:0009299 mRNA transcription(GO:0009299)
0.0 0.1 GO:0006513 protein monoubiquitination(GO:0006513)
0.0 0.3 GO:2000031 regulation of salicylic acid mediated signaling pathway(GO:2000031)
0.0 0.1 GO:0016926 protein desumoylation(GO:0016926)
0.0 0.3 GO:0071462 cellular response to water stimulus(GO:0071462)
0.0 0.4 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.0 0.2 GO:0080156 mitochondrial mRNA modification(GO:0080156)
0.0 0.2 GO:0009269 response to desiccation(GO:0009269)
0.0 1.1 GO:0007623 circadian rhythm(GO:0007623) rhythmic process(GO:0048511)
0.0 0.3 GO:0010252 auxin homeostasis(GO:0010252)
0.0 0.7 GO:0006401 RNA catabolic process(GO:0006401)
0.0 0.0 GO:0016046 detection of fungus(GO:0016046)
0.0 0.2 GO:0000105 histidine biosynthetic process(GO:0000105) histidine metabolic process(GO:0006547) imidazole-containing compound metabolic process(GO:0052803)
0.0 1.0 GO:0009739 response to gibberellin(GO:0009739)
0.0 0.1 GO:0051443 positive regulation of ubiquitin-protein transferase activity(GO:0051443)
0.0 0.3 GO:0005991 trehalose metabolic process(GO:0005991)
0.0 0.4 GO:0085029 pollen wall assembly(GO:0010208) cellular component assembly involved in morphogenesis(GO:0010927) extracellular matrix assembly(GO:0085029)
0.0 0.1 GO:0043966 histone H3 acetylation(GO:0043966)
0.0 0.6 GO:0042273 ribosomal large subunit biogenesis(GO:0042273)
0.0 0.1 GO:0043462 regulation of ATPase activity(GO:0043462)
0.0 0.1 GO:0010206 photosystem II repair(GO:0010206)
0.0 0.1 GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway(GO:0019287)
0.0 0.1 GO:0048829 root cap development(GO:0048829)
0.0 0.3 GO:1900140 regulation of seedling development(GO:1900140)
0.0 0.3 GO:0035266 meristem growth(GO:0035266)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.1 GO:0009925 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.3 0.9 GO:0016328 lateral plasma membrane(GO:0016328)
0.2 0.6 GO:0030689 Noc complex(GO:0030689)
0.2 0.5 GO:0009514 glyoxysome(GO:0009514)
0.2 0.5 GO:0005775 vacuolar lumen(GO:0005775)
0.2 2.9 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.1 1.0 GO:0030688 preribosome, small subunit precursor(GO:0030688)
0.1 0.4 GO:0005967 mitochondrial pyruvate dehydrogenase complex(GO:0005967)
0.1 0.5 GO:0034426 etioplast envelope(GO:0034425) etioplast membrane(GO:0034426)
0.1 0.4 GO:0034272 phosphatidylinositol 3-kinase complex(GO:0005942) phosphatidylinositol 3-kinase complex, class III, type I(GO:0034271) phosphatidylinositol 3-kinase complex, class III, type II(GO:0034272) phosphatidylinositol 3-kinase complex, class III(GO:0035032)
0.1 0.8 GO:0000813 ESCRT I complex(GO:0000813)
0.1 0.9 GO:0031428 box C/D snoRNP complex(GO:0031428)
0.1 0.5 GO:0000214 tRNA-intron endonuclease complex(GO:0000214)
0.1 1.3 GO:0048471 perinuclear region of cytoplasm(GO:0048471)
0.1 0.3 GO:0010316 pyrophosphate-dependent phosphofructokinase complex(GO:0010316)
0.1 0.3 GO:0016471 vacuolar proton-transporting V-type ATPase complex(GO:0016471)
0.1 0.5 GO:0005828 kinetochore microtubule(GO:0005828)
0.1 0.2 GO:0060293 P granule(GO:0043186) pole plasm(GO:0045495) germ plasm(GO:0060293)
0.1 0.4 GO:0031205 endoplasmic reticulum Sec complex(GO:0031205)
0.1 1.1 GO:0019773 proteasome core complex, alpha-subunit complex(GO:0019773)
0.1 0.6 GO:0042555 MCM complex(GO:0042555)
0.1 0.3 GO:0009897 external side of plasma membrane(GO:0009897)
0.1 0.5 GO:0031464 Cul4A-RING E3 ubiquitin ligase complex(GO:0031464)
0.1 0.2 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)
0.1 0.4 GO:0000808 origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664)
0.1 0.5 GO:0017119 Golgi transport complex(GO:0017119)
0.1 0.2 GO:0018444 translation release factor complex(GO:0018444)
0.1 1.3 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.1 0.3 GO:0055038 recycling endosome membrane(GO:0055038)
0.1 0.3 GO:0000922 spindle pole(GO:0000922)
0.0 0.3 GO:0030897 HOPS complex(GO:0030897)
0.0 0.1 GO:0048188 Set1C/COMPASS complex(GO:0048188)
0.0 0.3 GO:0070652 HAUS complex(GO:0070652)
0.0 0.3 GO:0001405 presequence translocase-associated import motor(GO:0001405)
0.0 0.5 GO:0005742 mitochondrial outer membrane translocase complex(GO:0005742)
0.0 0.2 GO:0042765 GPI-anchor transamidase complex(GO:0042765)
0.0 3.7 GO:0000138 Golgi trans cisterna(GO:0000138)
0.0 0.4 GO:0072546 ER membrane protein complex(GO:0072546)
0.0 0.7 GO:0009531 secondary cell wall(GO:0009531)
0.0 0.3 GO:0000777 condensed chromosome kinetochore(GO:0000777)
0.0 0.2 GO:0000418 DNA-directed RNA polymerase IV complex(GO:0000418)
0.0 0.2 GO:0043036 chloroplast starch grain(GO:0009569) starch grain(GO:0043036)
0.0 0.3 GO:0000930 gamma-tubulin complex(GO:0000930)
0.0 6.5 GO:0009505 plant-type cell wall(GO:0009505)
0.0 0.8 GO:0000419 DNA-directed RNA polymerase V complex(GO:0000419)
0.0 0.2 GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098)
0.0 0.3 GO:0005884 actin filament(GO:0005884)
0.0 0.4 GO:0005839 proteasome core complex(GO:0005839) proteasome core complex, beta-subunit complex(GO:0019774)
0.0 0.2 GO:0042406 extrinsic component of endoplasmic reticulum membrane(GO:0042406)
0.0 0.4 GO:0000314 organellar small ribosomal subunit(GO:0000314)
0.0 0.1 GO:0005853 eukaryotic translation elongation factor 1 complex(GO:0005853)
0.0 1.5 GO:0009707 chloroplast outer membrane(GO:0009707)
0.0 1.0 GO:0000137 Golgi cis cisterna(GO:0000137)
0.0 0.3 GO:0005744 mitochondrial inner membrane presequence translocase complex(GO:0005744)
0.0 8.6 GO:0005618 cell wall(GO:0005618) external encapsulating structure(GO:0030312)
0.0 1.4 GO:0005797 Golgi medial cisterna(GO:0005797)
0.0 0.3 GO:0031305 integral component of mitochondrial inner membrane(GO:0031305)
0.0 0.2 GO:1990726 Lsm1-7-Pat1 complex(GO:1990726)
0.0 0.1 GO:0005655 nucleolar ribonuclease P complex(GO:0005655) multimeric ribonuclease P complex(GO:0030681)
0.0 0.3 GO:0030140 trans-Golgi network transport vesicle(GO:0030140)
0.0 0.1 GO:0005787 signal peptidase complex(GO:0005787)
0.0 0.3 GO:0005779 integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)
0.0 0.2 GO:0008180 COP9 signalosome(GO:0008180)
0.0 0.3 GO:0005758 mitochondrial intermembrane space(GO:0005758)
0.0 0.5 GO:0005852 eukaryotic translation initiation factor 3 complex(GO:0005852)
0.0 1.7 GO:0005887 integral component of plasma membrane(GO:0005887)
0.0 2.5 GO:0000325 plant-type vacuole(GO:0000325)
0.0 1.0 GO:0005747 mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271)
0.0 4.4 GO:0031225 anchored component of membrane(GO:0031225)
0.0 0.2 GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)(GO:0005749) succinate dehydrogenase complex (ubiquinone)(GO:0045257) fumarate reductase complex(GO:0045283)
0.0 3.8 GO:0048046 apoplast(GO:0048046)
0.0 3.6 GO:0005789 endoplasmic reticulum membrane(GO:0005789)
0.0 0.5 GO:1903293 protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293)
0.0 0.1 GO:0005663 DNA replication factor C complex(GO:0005663)
0.0 0.2 GO:0033179 proton-transporting V-type ATPase, V0 domain(GO:0033179)
0.0 0.3 GO:0005666 DNA-directed RNA polymerase III complex(GO:0005666)
0.0 0.9 GO:0005802 trans-Golgi network(GO:0005802)
0.0 0.6 GO:0009706 chloroplast inner membrane(GO:0009706)
0.0 0.1 GO:0035838 site of polarized growth(GO:0030427) growing cell tip(GO:0035838) cell tip(GO:0051286) pollen tube tip(GO:0090404)
0.0 34.4 GO:0005886 plasma membrane(GO:0005886)
0.0 0.3 GO:0005680 anaphase-promoting complex(GO:0005680)
0.0 0.9 GO:0031966 mitochondrial membrane(GO:0031966)
0.0 0.7 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 3.8 GO:0008964 phosphoenolpyruvate carboxylase activity(GO:0008964)
0.5 4.9 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.3 1.7 GO:0031957 very long-chain fatty acid-CoA ligase activity(GO:0031957)
0.3 1.0 GO:0008440 inositol-1,4,5-trisphosphate 6-kinase activity(GO:0000823) inositol tetrakisphosphate 3-kinase activity(GO:0000824) inositol-1,4,5-trisphosphate 3-kinase activity(GO:0008440) inositol tetrakisphosphate 5-kinase activity(GO:0047326)
0.3 0.9 GO:0008936 nicotinamidase activity(GO:0008936)
0.3 0.9 GO:0036009 protein-glutamine N-methyltransferase activity(GO:0036009) histone-glutamine methyltransferase activity(GO:1990259)
0.3 1.8 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)
0.3 4.9 GO:0016157 sucrose synthase activity(GO:0016157)
0.3 1.1 GO:0008395 steroid hydroxylase activity(GO:0008395)
0.3 1.4 GO:0003680 AT DNA binding(GO:0003680)
0.3 1.1 GO:0080103 4-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080103)
0.2 0.9 GO:0015141 succinate transmembrane transporter activity(GO:0015141)
0.2 1.3 GO:0015193 L-proline transmembrane transporter activity(GO:0015193)
0.2 1.1 GO:0005457 GDP-fucose transmembrane transporter activity(GO:0005457)
0.2 1.1 GO:0004028 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028)
0.2 2.7 GO:0042389 omega-3 fatty acid desaturase activity(GO:0042389)
0.2 0.6 GO:0008517 folic acid transporter activity(GO:0008517)
0.2 1.2 GO:0016531 copper chaperone activity(GO:0016531)
0.2 1.0 GO:1902388 ceramide transporter activity(GO:0035620) sphingolipid transporter activity(GO:0046624) ceramide 1-phosphate binding(GO:1902387) ceramide 1-phosphate transporter activity(GO:1902388)
0.2 0.6 GO:0031210 phosphatidylcholine binding(GO:0031210) quaternary ammonium group binding(GO:0050997)
0.2 0.5 GO:0004819 glutamine-tRNA ligase activity(GO:0004819)
0.2 0.5 GO:0016643 glutamate synthase (ferredoxin) activity(GO:0016041) oxidoreductase activity, acting on the CH-NH2 group of donors, iron-sulfur protein as acceptor(GO:0016643)
0.2 0.5 GO:0004034 aldose 1-epimerase activity(GO:0004034)
0.2 0.7 GO:0004348 glucosylceramidase activity(GO:0004348)
0.2 1.0 GO:0052691 UDP-arabinopyranose mutase activity(GO:0052691)
0.2 1.0 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.2 0.7 GO:0000035 acyl binding(GO:0000035)
0.2 0.5 GO:0019776 Atg8 ligase activity(GO:0019776) Atg8 activating enzyme activity(GO:0019779)
0.2 2.9 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.1 1.0 GO:0001872 (1->3)-beta-D-glucan binding(GO:0001872)
0.1 0.4 GO:0016802 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
0.1 0.4 GO:0001130 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.1 0.5 GO:0070330 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
0.1 0.5 GO:0031516 far-red light photoreceptor activity(GO:0031516)
0.1 0.5 GO:0004475 mannose-1-phosphate guanylyltransferase activity(GO:0004475)
0.1 0.6 GO:0003979 UDP-glucose 6-dehydrogenase activity(GO:0003979)
0.1 0.4 GO:0001054 RNA polymerase I activity(GO:0001054) RNA polymerase III activity(GO:0001056)
0.1 0.8 GO:0005034 osmosensor activity(GO:0005034)
0.1 2.1 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.1 0.6 GO:0010277 chlorophyllide a oxygenase [overall] activity(GO:0010277)
0.1 0.3 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.1 0.9 GO:0004715 non-membrane spanning protein tyrosine kinase activity(GO:0004715)
0.1 1.3 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.1 1.3 GO:0050373 UDP-arabinose 4-epimerase activity(GO:0050373)
0.1 0.9 GO:0005536 glucose binding(GO:0005536) mannokinase activity(GO:0019158)
0.1 0.5 GO:0080122 AMP transmembrane transporter activity(GO:0080122)
0.1 0.3 GO:1901474 thiamine pyrophosphate transporter activity(GO:0090422) azole transmembrane transporter activity(GO:1901474)
0.1 1.5 GO:0015562 efflux transmembrane transporter activity(GO:0015562)
0.1 0.6 GO:0004416 hydroxyacylglutathione hydrolase activity(GO:0004416)
0.1 0.6 GO:0004376 glycolipid mannosyltransferase activity(GO:0004376)
0.1 0.5 GO:0051740 ethylene receptor activity(GO:0038199) ethylene binding(GO:0051740) alkene binding(GO:0072328)
0.1 0.8 GO:0008381 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.1 1.1 GO:0016161 beta-amylase activity(GO:0016161)
0.1 0.7 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.1 1.4 GO:0019707 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)
0.1 0.4 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.1 0.3 GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity(GO:0004571)
0.1 0.3 GO:0047209 coniferyl-alcohol glucosyltransferase activity(GO:0047209)
0.1 0.4 GO:0003852 2-isopropylmalate synthase activity(GO:0003852)
0.1 1.8 GO:0005199 structural constituent of cell wall(GO:0005199)
0.1 0.4 GO:0004617 phosphoglycerate dehydrogenase activity(GO:0004617)
0.1 0.3 GO:0004106 chorismate mutase activity(GO:0004106)
0.1 1.3 GO:0031420 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.1 0.5 GO:0022829 porin activity(GO:0015288) wide pore channel activity(GO:0022829)
0.1 1.2 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.1 0.4 GO:0033897 ribonuclease T2 activity(GO:0033897)
0.1 0.3 GO:0043015 gamma-tubulin binding(GO:0043015)
0.1 0.3 GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity(GO:0000179)
0.1 0.2 GO:0043682 copper-transporting ATPase activity(GO:0043682)
0.1 1.1 GO:0008097 5S rRNA binding(GO:0008097)
0.1 0.2 GO:0031219 levanase activity(GO:0031219) fructan beta-fructosidase activity(GO:0051669)
0.1 2.2 GO:0045309 protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219)
0.1 0.6 GO:0008026 ATP-dependent DNA helicase activity(GO:0004003) ATP-dependent helicase activity(GO:0008026) single-stranded DNA-dependent ATP-dependent DNA helicase activity(GO:0017116) single-stranded DNA-dependent ATPase activity(GO:0043142) purine NTP-dependent helicase activity(GO:0070035)
0.1 0.6 GO:0001653 peptide receptor activity(GO:0001653)
0.1 0.6 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
0.1 0.3 GO:0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity(GO:0047334)
0.1 1.4 GO:0022839 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.1 0.4 GO:0046577 long-chain-alcohol oxidase activity(GO:0046577)
0.1 0.8 GO:0015462 protein-transmembrane transporting ATPase activity(GO:0015462)
0.1 1.8 GO:0005388 calcium-transporting ATPase activity(GO:0005388)
0.1 1.8 GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity(GO:0015450)
0.1 1.4 GO:0005381 iron ion transmembrane transporter activity(GO:0005381)
0.1 0.2 GO:0000170 sphingosine hydroxylase activity(GO:0000170)
0.1 0.2 GO:0045430 chalcone isomerase activity(GO:0045430)
0.1 0.3 GO:1902417 (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity(GO:1902417)
0.1 1.3 GO:0019902 phosphatase binding(GO:0019902)
0.1 1.0 GO:0004312 fatty acid synthase activity(GO:0004312)
0.1 1.7 GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor(GO:0016641)
0.1 0.3 GO:0000340 RNA 7-methylguanosine cap binding(GO:0000340)
0.1 1.1 GO:0035064 methylated histone binding(GO:0035064)
0.1 0.4 GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity(GO:0004739)
0.1 0.7 GO:0004032 alditol:NADP+ 1-oxidoreductase activity(GO:0004032)
0.1 1.9 GO:0004725 protein tyrosine phosphatase activity(GO:0004725)
0.1 0.7 GO:0004714 transmembrane receptor protein tyrosine kinase activity(GO:0004714)
0.1 0.2 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.1 0.2 GO:0031956 medium-chain fatty acid-CoA ligase activity(GO:0031956)
0.1 0.2 GO:0019781 NEDD8 activating enzyme activity(GO:0019781)
0.1 0.2 GO:0045140 inositol phosphoceramide synthase activity(GO:0045140)
0.1 0.4 GO:0046592 polyamine oxidase activity(GO:0046592)
0.1 0.7 GO:0003730 mRNA 3'-UTR binding(GO:0003730)
0.1 0.5 GO:0005384 manganese ion transmembrane transporter activity(GO:0005384)
0.1 0.6 GO:0008506 sucrose:proton symporter activity(GO:0008506)
0.1 0.3 GO:0004473 malate dehydrogenase (decarboxylating) (NADP+) activity(GO:0004473)
0.1 0.2 GO:0051980 iron chelate transmembrane transporter activity(GO:0015603) iron-nicotianamine transmembrane transporter activity(GO:0051980)
0.1 0.4 GO:0005254 voltage-gated chloride channel activity(GO:0005247) chloride channel activity(GO:0005254)
0.1 0.4 GO:0008515 sucrose transmembrane transporter activity(GO:0008515)
0.1 0.3 GO:0050664 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.1 0.2 GO:0004412 homoserine dehydrogenase activity(GO:0004412)
0.1 0.4 GO:0043995 histone acetyltransferase activity (H4-K5 specific)(GO:0043995)
0.0 0.2 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.0 0.2 GO:0015089 high-affinity copper ion transmembrane transporter activity(GO:0015089)
0.0 0.2 GO:0034511 U3 snoRNA binding(GO:0034511)
0.0 0.2 GO:1901982 disaccharide binding(GO:0048030) maltose binding(GO:1901982)
0.0 0.3 GO:0001046 core promoter sequence-specific DNA binding(GO:0001046) core promoter binding(GO:0001047)
0.0 3.9 GO:0003724 RNA helicase activity(GO:0003724)
0.0 0.2 GO:0004400 histidinol-phosphate transaminase activity(GO:0004400)
0.0 0.5 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.0 0.3 GO:0046923 ER retention sequence binding(GO:0046923)
0.0 0.1 GO:0004563 beta-N-acetylhexosaminidase activity(GO:0004563)
0.0 0.1 GO:0008174 mRNA methyltransferase activity(GO:0008174)
0.0 0.4 GO:1990137 plant seed peroxidase activity(GO:1990137)
0.0 0.2 GO:1990825 sequence-specific mRNA binding(GO:1990825)
0.0 0.4 GO:0004661 protein geranylgeranyltransferase activity(GO:0004661)
0.0 0.3 GO:0008121 ubiquinol-cytochrome-c reductase activity(GO:0008121) oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor(GO:0016681)
0.0 2.9 GO:0004650 polygalacturonase activity(GO:0004650)
0.0 0.6 GO:0004629 phospholipase C activity(GO:0004629)
0.0 0.2 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 0.6 GO:0050136 NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.0 0.2 GO:0030943 mitochondrion targeting sequence binding(GO:0030943)
0.0 0.4 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.0 0.1 GO:0070139 ubiquitin-like protein-specific endopeptidase activity(GO:0070137) SUMO-specific endopeptidase activity(GO:0070139)
0.0 0.3 GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0003830)
0.0 0.4 GO:0035252 UDP-xylosyltransferase activity(GO:0035252)
0.0 0.9 GO:0022821 potassium ion antiporter activity(GO:0022821)
0.0 0.2 GO:0017050 D-erythro-sphingosine kinase activity(GO:0017050)
0.0 0.3 GO:0008022 protein C-terminus binding(GO:0008022)
0.0 0.4 GO:0047617 acyl-CoA hydrolase activity(GO:0047617)
0.0 0.6 GO:0051879 Hsp90 protein binding(GO:0051879)
0.0 0.4 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.0 0.4 GO:0009927 histidine phosphotransfer kinase activity(GO:0009927)
0.0 0.3 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.0 0.2 GO:0003913 DNA photolyase activity(GO:0003913)
0.0 0.9 GO:0016168 chlorophyll binding(GO:0016168)
0.0 0.4 GO:0010385 double-stranded methylated DNA binding(GO:0010385)
0.0 0.8 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 0.6 GO:0005504 fatty acid binding(GO:0005504)
0.0 0.2 GO:0031177 phosphopantetheine binding(GO:0031177)
0.0 0.4 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.0 0.3 GO:0051185 S-adenosyl-L-methionine transmembrane transporter activity(GO:0000095) coenzyme transporter activity(GO:0051185)
0.0 0.4 GO:0009044 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.0 0.5 GO:0004675 transmembrane receptor protein serine/threonine kinase activity(GO:0004675)
0.0 2.0 GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228)
0.0 0.2 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.0 0.9 GO:0005249 voltage-gated potassium channel activity(GO:0005249)
0.0 0.4 GO:0003688 DNA replication origin binding(GO:0003688)
0.0 0.3 GO:0008526 phosphatidylinositol transporter activity(GO:0008526)
0.0 0.4 GO:0004656 procollagen-proline 4-dioxygenase activity(GO:0004656) procollagen-proline dioxygenase activity(GO:0019798) peptidyl-proline 4-dioxygenase activity(GO:0031545)
0.0 0.1 GO:1990380 Lys48-specific deubiquitinase activity(GO:1990380)
0.0 0.1 GO:0004421 hydroxymethylglutaryl-CoA synthase activity(GO:0004421)
0.0 0.4 GO:0004144 diacylglycerol O-acyltransferase activity(GO:0004144)
0.0 0.3 GO:0070181 small ribosomal subunit rRNA binding(GO:0070181)
0.0 0.2 GO:0008177 succinate dehydrogenase (ubiquinone) activity(GO:0008177)
0.0 0.2 GO:0017112 Rab guanyl-nucleotide exchange factor activity(GO:0017112)
0.0 0.3 GO:0008143 poly(A) binding(GO:0008143)
0.0 0.7 GO:0008810 cellulase activity(GO:0008810)
0.0 0.2 GO:0004605 phosphatidate cytidylyltransferase activity(GO:0004605)
0.0 0.1 GO:0003785 actin monomer binding(GO:0003785)
0.0 0.2 GO:1990538 xylan O-acetyltransferase activity(GO:1990538)
0.0 0.1 GO:0018685 alkane 1-monooxygenase activity(GO:0018685)
0.0 0.1 GO:0019534 tetracycline transporter activity(GO:0008493) toxin transporter activity(GO:0019534) antibiotic transporter activity(GO:0042895)
0.0 0.1 GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227)
0.0 0.1 GO:0000150 recombinase activity(GO:0000150)
0.0 0.1 GO:0042085 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085)
0.0 0.5 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.0 1.3 GO:0019901 protein kinase binding(GO:0019901)
0.0 1.2 GO:0004712 protein serine/threonine/tyrosine kinase activity(GO:0004712)
0.0 0.1 GO:0008428 ribonuclease inhibitor activity(GO:0008428) 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity(GO:0047443)
0.0 0.4 GO:0016844 strictosidine synthase activity(GO:0016844)
0.0 0.6 GO:0008553 hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)
0.0 0.9 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899)
0.0 0.1 GO:0010178 IAA-amino acid conjugate hydrolase activity(GO:0010178)
0.0 0.2 GO:0004713 protein tyrosine kinase activity(GO:0004713)
0.0 0.5 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 1.4 GO:0015171 amino acid transmembrane transporter activity(GO:0015171)
0.0 0.1 GO:0051011 microtubule minus-end binding(GO:0051011)
0.0 0.4 GO:0070122 isopeptidase activity(GO:0070122)
0.0 0.1 GO:0070567 cytidylyltransferase activity(GO:0070567)
0.0 0.1 GO:0008728 GTP diphosphokinase activity(GO:0008728)
0.0 0.4 GO:0030247 pattern binding(GO:0001871) polysaccharide binding(GO:0030247)
0.0 0.3 GO:0030276 clathrin binding(GO:0030276)
0.0 0.2 GO:0030674 protein binding, bridging(GO:0030674)
0.0 0.2 GO:0034594 phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity(GO:0034485) phosphatidylinositol trisphosphate phosphatase activity(GO:0034594)
0.0 0.0 GO:0051765 inositol tetrakisphosphate kinase activity(GO:0051765)
0.0 0.7 GO:0010857 calmodulin-dependent protein kinase activity(GO:0004683) calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857)
0.0 0.0 GO:0010283 pinoresinol reductase activity(GO:0010283)
0.0 0.4 GO:0031624 ubiquitin conjugating enzyme binding(GO:0031624)
0.0 1.7 GO:0009055 electron carrier activity(GO:0009055)
0.0 0.2 GO:0003746 translation elongation factor activity(GO:0003746)
0.0 0.1 GO:0016833 oxo-acid-lyase activity(GO:0016833)
0.0 0.8 GO:0005096 GTPase activator activity(GO:0005096)
0.0 0.1 GO:0010429 methyl-CpNpG binding(GO:0010428) methyl-CpNpN binding(GO:0010429)
0.0 0.3 GO:0003756 protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864)
0.0 0.0 GO:0052626 4-aminobenzoate amino acid synthetase activity(GO:0052625) benzoate amino acid synthetase activity(GO:0052626) vanillate amino acid synthetase activity(GO:0052627) 4-hydroxybenzoate amino acid synthetase activity(GO:0052628)
0.0 3.0 GO:0003735 structural constituent of ribosome(GO:0003735)
0.0 0.4 GO:0004888 transmembrane signaling receptor activity(GO:0004888)
0.0 0.1 GO:1990757 ubiquitin ligase activator activity(GO:1990757)
0.0 0.0 GO:0015292 uniporter activity(GO:0015292)
0.0 0.0 GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity(GO:0050567)
0.0 8.5 GO:0004672 protein kinase activity(GO:0004672)
0.0 1.1 GO:0051082 unfolded protein binding(GO:0051082)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.9 SIG PIP3 SIGNALING IN CARDIAC MYOCTES Genes related to PIP3 signaling in cardiac myocytes
0.2 0.7 ST G ALPHA I PATHWAY G alpha i Pathway
0.2 1.2 PID MTOR 4PATHWAY mTOR signaling pathway
0.2 0.7 NABA SECRETED FACTORS Genes encoding secreted soluble factors
0.1 0.5 ST WNT BETA CATENIN PATHWAY Wnt/beta-catenin Pathway
0.1 0.1 SA CASPASE CASCADE Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade.
0.1 0.5 PID PLK1 PATHWAY PLK1 signaling events
0.1 0.2 PID NFAT TFPATHWAY Calcineurin-regulated NFAT-dependent transcription in lymphocytes
0.1 0.3 PID S1P S1P1 PATHWAY S1P1 pathway
0.1 0.2 PID RAC1 PATHWAY RAC1 signaling pathway
0.1 0.7 PID ERBB1 DOWNSTREAM PATHWAY ErbB1 downstream signaling
0.1 0.1 PID ATF2 PATHWAY ATF-2 transcription factor network
0.1 0.2 PID HES HEY PATHWAY Notch-mediated HES/HEY network
0.0 0.4 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network
0.0 0.3 PID FANCONI PATHWAY Fanconi anemia pathway
0.0 0.2 PID AP1 PATHWAY AP-1 transcription factor network
0.0 0.4 PID ATR PATHWAY ATR signaling pathway
0.0 0.1 NABA ECM GLYCOPROTEINS Genes encoding structural ECM glycoproteins
0.0 0.1 PID IL8 CXCR2 PATHWAY IL8- and CXCR2-mediated signaling events
0.0 0.0 ST FAS SIGNALING PATHWAY Fas Signaling Pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.2 REACTOME DEADENYLATION OF MRNA Genes involved in Deadenylation of mRNA
0.4 1.6 REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol
0.3 1.0 REACTOME REGULATION OF INSULIN SECRETION Genes involved in Regulation of Insulin Secretion
0.2 0.6 REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC
0.2 0.7 REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES Genes involved in Recruitment of mitotic centrosome proteins and complexes
0.1 0.4 REACTOME NRAGE SIGNALS DEATH THROUGH JNK Genes involved in NRAGE signals death through JNK
0.1 0.5 REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES Genes involved in Antiviral mechanism by IFN-stimulated genes
0.1 0.4 REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT Genes involved in SLC-mediated transmembrane transport
0.1 0.7 REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION Genes involved in Platelet activation, signaling and aggregation
0.1 0.2 REACTOME INTERFERON SIGNALING Genes involved in Interferon Signaling
0.1 0.6 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
0.1 0.3 REACTOME CITRIC ACID CYCLE TCA CYCLE Genes involved in Citric acid cycle (TCA cycle)
0.1 1.3 REACTOME HEMOSTASIS Genes involved in Hemostasis
0.1 0.4 REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION Genes involved in E2F-enabled inhibition of pre-replication complex formation
0.1 0.2 REACTOME ORC1 REMOVAL FROM CHROMATIN Genes involved in Orc1 removal from chromatin
0.0 0.2 REACTOME MITOTIC PROMETAPHASE Genes involved in Mitotic Prometaphase
0.0 0.2 REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS Genes involved in Golgi Associated Vesicle Biogenesis
0.0 0.2 REACTOME FANCONI ANEMIA PATHWAY Genes involved in Fanconi Anemia pathway
0.0 0.2 REACTOME G2 M CHECKPOINTS Genes involved in G2/M Checkpoints
0.0 0.1 REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES Genes involved in Metabolism of amino acids and derivatives
0.0 0.3 REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT Genes involved in ABC-family proteins mediated transport