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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G37260
Z-value: 1.04
Transcription factors associated with AT4G37260
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G37260
|
AT4G37260 | myb domain protein 73 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB73 | arTal_v1_Chr4_+_17540490_17540490 | -0.18 | 5.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_28053030_28053030 Show fit | 1.97 |
AT1G74670.1
|
Gibberellin-regulated family protein |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 1.90 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 1.71 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 1.64 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr1_-_4835089_4835089 Show fit | 1.63 |
AT1G14120.2
AT1G14120.1 AT1G14120.3 |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr1_-_4682309_4682382 Show fit | 1.40 |
AT1G13650.3
AT1G13650.4 AT1G13650.2 AT1G13650.1 |
hypothetical protein |
|
| arTal_v1_Chr5_+_23187840_23187840 Show fit | 1.35 |
AT5G57220.1
|
cytochrome P450, family 81, subfamily F, polypeptide 2 |
|
| arTal_v1_Chr5_-_8175431_8175525 Show fit | 1.34 |
AT5G24150.2
AT5G24150.1 |
FAD/NAD(P)-binding oxidoreductase family protein |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 1.33 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr2_-_8533779_8533779 Show fit | 1.28 |
AT2G19800.1
|
myo-inositol oxygenase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G37260
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 12.8 | GO:0036294 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) |
| 0.1 | 9.5 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 4.9 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.2 | 3.9 | GO:0030091 | protein repair(GO:0030091) |
| 0.2 | 3.0 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.1 | 2.5 | GO:0010193 | response to ozone(GO:0010193) |
| 0.2 | 2.4 | GO:0051865 | protein autoubiquitination(GO:0051865) |
| 0.2 | 2.1 | GO:0009970 | cellular response to sulfate starvation(GO:0009970) |
| 0.3 | 2.0 | GO:0009759 | indole glucosinolate biosynthetic process(GO:0009759) |
| 0.1 | 1.9 | GO:0015833 | oligopeptide transport(GO:0006857) peptide transport(GO:0015833) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.6 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.1 | 1.6 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.1 | 1.6 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 1.6 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 1.4 | GO:0000786 | nucleosome(GO:0000786) |
| 0.1 | 1.3 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
| 0.1 | 0.9 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.0 | 0.9 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.1 | 0.8 | GO:0030076 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.1 | 0.7 | GO:0001673 | male germ cell nucleus(GO:0001673) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 4.0 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.0 | 3.0 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.2 | 2.9 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.0 | 2.3 | GO:0000987 | core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159) |
| 0.1 | 2.1 | GO:0010427 | abscisic acid binding(GO:0010427) |
| 0.2 | 2.0 | GO:0004096 | catalase activity(GO:0004096) |
| 0.0 | 1.9 | GO:0015144 | carbohydrate transmembrane transporter activity(GO:0015144) |
| 0.1 | 1.6 | GO:0032440 | 2-alkenal reductase [NAD(P)] activity(GO:0032440) |
| 0.0 | 1.6 | GO:0044390 | ubiquitin-like protein conjugating enzyme binding(GO:0044390) |
| 0.2 | 1.5 | GO:0045543 | gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.9 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.5 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.4 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 0.3 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.3 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.0 | 0.2 | PID ATM PATHWAY | ATM pathway |
| 0.0 | 0.0 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
| 0.0 | 0.0 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.0 | 0.0 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.9 | REACTOME RNA POL II TRANSCRIPTION | Genes involved in RNA Polymerase II Transcription |
| 0.1 | 0.8 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.2 | 0.7 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.0 | 0.4 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.1 | 0.3 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.1 | 0.2 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.0 | 0.2 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.0 | 0.2 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.0 | 0.1 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |
| 0.0 | 0.1 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |