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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G37180
Z-value: 0.89
Transcription factors associated with AT4G37180
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G37180
|
AT4G37180 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT4G37180 | arTal_v1_Chr4_+_17504428_17504564 | 0.30 | 2.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_28975255_28975255 Show fit | 0.94 |
AT1G77120.1
|
alcohol dehydrogenase 1 |
|
| arTal_v1_Chr4_+_10707344_10707378 Show fit | 0.87 |
AT4G19690.2
AT4G19690.1 |
iron-regulated transporter 1 |
|
| arTal_v1_Chr5_+_5206156_5206156 Show fit | 0.78 |
AT5G15950.2
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr5_+_5205869_5205869 Show fit | 0.77 |
AT5G15950.1
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr1_+_3019639_3019639 Show fit | 0.71 |
AT1G09350.1
|
galactinol synthase 3 |
|
| arTal_v1_Chr3_-_21085245_21085245 Show fit | 0.70 |
AT3G56970.1
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
|
| arTal_v1_Chr4_-_15954803_15954803 Show fit | 0.70 |
AT4G33070.1
|
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein |
|
| arTal_v1_Chr1_+_28498821_28498821 Show fit | 0.69 |
AT1G75900.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr1_+_3020221_3020221 Show fit | 0.68 |
AT1G09350.2
|
galactinol synthase 3 |
|
| arTal_v1_Chr2_+_12004658_12004700 Show fit | 0.67 |
AT2G28160.1
AT2G28160.2 |
FER-like regulator of iron uptake |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G37180
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.4 | GO:0006412 | translation(GO:0006412) |
| 0.0 | 3.1 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.0 | 3.1 | GO:0018105 | peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209) |
| 0.1 | 2.1 | GO:0002183 | cytoplasmic translational initiation(GO:0002183) |
| 0.1 | 2.1 | GO:0002181 | cytoplasmic translation(GO:0002181) |
| 0.1 | 2.0 | GO:0000470 | maturation of LSU-rRNA(GO:0000470) |
| 0.0 | 2.0 | GO:0010286 | heat acclimation(GO:0010286) |
| 0.0 | 2.0 | GO:0070646 | protein modification by small protein removal(GO:0070646) |
| 0.1 | 1.9 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.0 | 1.9 | GO:0006101 | tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 12.9 | GO:0055044 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.0 | 7.0 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.0 | 5.6 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 4.5 | GO:0022626 | cytosolic ribosome(GO:0022626) |
| 0.0 | 4.4 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 4.4 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.0 | 4.3 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 3.0 | GO:0005768 | endosome(GO:0005768) |
| 0.0 | 2.9 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.0 | 2.6 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.2 | GO:0044822 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.0 | 6.5 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 4.4 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.1 | 3.7 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.0 | 3.4 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.0 | 2.5 | GO:0031625 | ubiquitin protein ligase binding(GO:0031625) |
| 0.0 | 2.2 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.0 | 2.1 | GO:0010857 | calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857) |
| 0.0 | 2.0 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.0 | 1.9 | GO:0101005 | ubiquitinyl hydrolase activity(GO:0101005) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.6 | PID NECTIN PATHWAY | Nectin adhesion pathway |
| 0.1 | 0.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.4 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.1 | 0.4 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.1 | 0.4 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.1 | 0.2 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
| 0.1 | 0.2 | PID BARD1 PATHWAY | BARD1 signaling events |
| 0.1 | 0.2 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.1 | 0.2 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.0 | 0.2 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.1 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.2 | 0.6 | REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS | Genes involved in p130Cas linkage to MAPK signaling for integrins |
| 0.2 | 0.6 | REACTOME PKB MEDIATED EVENTS | Genes involved in PKB-mediated events |
| 0.1 | 0.6 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.1 | 0.5 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.0 | 0.5 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.1 | 0.4 | REACTOME IL1 SIGNALING | Genes involved in Interleukin-1 signaling |
| 0.0 | 0.4 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.0 | 0.4 | REACTOME HEMOSTASIS | Genes involved in Hemostasis |
| 0.1 | 0.3 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |