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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT4G36920

Z-value: 0.58

Transcription factors associated with AT4G36920

Gene Symbol Gene ID Gene Info
AT4G36920 Integrase-type DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AP2arTal_v1_Chr4_+_17400610_17400724-0.165.8e-01Click!

Activity profile of AT4G36920 motif

Sorted Z-values of AT4G36920 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_-_18811085 0.78 AT2G45660.2
AT2G45660.1
AGAMOUS-like 20
Chr5_-_22115539 0.60 AT5G54470.1
B-box type zinc finger family protein
Chr4_-_1500100 0.52 AT4G03400.2
Auxin-responsive GH3 family protein
Chr4_-_14393381 0.52 AT4G29190.1
Zinc finger C-x8-C-x5-C-x3-H type family protein
Chr2_-_14146471 0.50 AT2G33380.2
AT2G33380.1
Caleosin-related family protein
Chr4_-_1501599 0.49 AT4G03400.1
Auxin-responsive GH3 family protein
Chr2_+_15050677 0.49 AT2G35820.1
ureidoglycolate hydrolase
Chr2_+_15050498 0.49 AT2G35820.2
ureidoglycolate hydrolase
Chr5_+_6424779 0.47 AT5G19140.3
aluminum induced protein with YGL and LRDR motifs
Chr5_+_6423153 0.45 AT5G19140.2
AT5G19140.1
aluminum induced protein with YGL and LRDR motifs
Chr1_-_26796529 0.43 AT1G71030.1
AT1G71030.2
MYB-like 2
Chr3_+_16525245 0.43 AT3G45140.1
AT3G45140.2
lipoxygenase 2
Chr2_+_17507343 0.41 AT2G41940.1
zinc finger protein 8
Chr4_-_13019400 0.40 AT4G25480.1
dehydration response element B1A
Chr5_+_25040540 0.39 AT5G62360.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr1_+_19806263 0.38 AT1G53160.1
AT1G53160.2
AT1G53160.3
squamosa promoter binding protein-like 4
Chr3_+_3923735 0.34 AT3G12320.2
hypothetical protein
Chr4_-_2332814 0.34 AT4G04630.1
senescence regulator (Protein of unknown function, DUF584)
Chr5_-_18026077 0.34 AT5G44680.1
DNA glycosylase superfamily protein
Chr3_+_16818347 0.34 AT3G45780.2
phototropin 1
Chr3_+_16816721 0.33 AT3G45780.1
phototropin 1
Chr3_+_3923969 0.32 AT3G12320.3
hypothetical protein
Chr3_+_3923515 0.32 AT3G12320.1
hypothetical protein
Chr1_-_9649323 0.32 AT1G27730.1
salt tolerance zinc finger
Chr1_+_4542168 0.29 AT1G13260.1
related to ABI3/VP1 1
Chr3_+_18840411 0.28 AT3G50700.1
indeterminate(ID)-domain 2
Chr2_+_19104632 0.27 AT2G46530.1
AT2G46530.2
auxin response factor 11
Chr5_-_1994824 0.27 AT5G06530.2
AT5G06530.3
AT5G06530.4
AT5G06530.1
ABC-2 type transporter family protein
Chr1_-_18628452 0.26 AT1G50290.1
hypothetical protein
Chr2_+_19105112 0.25 AT2G46530.3
auxin response factor 11
Chr4_-_9834859 0.25 AT4G17670.1
senescence-associated family protein (DUF581)
Chr3_+_6710349 0.25 AT3G19370.3
AT3G19370.1
filament-like protein (DUF869)
Chr1_+_26604855 0.23 AT1G70560.1
tryptophan aminotransferase of Arabidopsis 1
Chr3_+_22434864 0.23 AT3G60690.1
SAUR-like auxin-responsive protein family
Chr3_+_6710720 0.23 AT3G19370.2
filament-like protein (DUF869)
Chr3_-_19453212 0.23 AT3G52480.1
transmembrane protein
Chr2_+_16765920 0.21 AT2G40130.2
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
Chr4_+_17369179 0.21 AT4G36870.3
AT4G36870.1
AT4G36870.4
BEL1-like homeodomain 2
Chr5_+_18264616 0.20 AT5G45160.1
Root hair defective 3 GTP-binding protein (RHD3)
Chr2_+_16765709 0.20 AT2G40130.1
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
Chr5_-_1086761 0.20 AT5G04020.1
AT5G04020.2
calmodulin binding protein
Chr1_+_19783185 0.19 AT1G53090.3
AT1G53090.1
AT1G53090.2
AT1G53090.5
AT1G53090.4
SPA1-related 4
Chr3_-_9486924 0.19 AT3G25905.1
CLAVATA3/ESR-RELATED 27
Chr1_+_26141726 0.17 AT1G69530.2
AT1G69530.1
AT1G69530.3
AT1G69530.5
AT1G69530.4
expansin A1
Chr3_-_1257017 0.17 AT3G04620.1
Alba DNA/RNA-binding protein
Chr5_+_4974671 0.17 AT5G15310.2
AT5G15310.4
AT5G15310.3
AT5G15310.1
myb domain protein 16
Chr1_-_6683533 0.17 AT1G19330.3
AT1G19330.1
AT1G19330.2
histone deacetylase complex subunit
Chr4_+_17368915 0.16 AT4G36870.2
BEL1-like homeodomain 2
Chr2_-_12228543 0.16 AT2G28550.6
AT2G28550.5
AT2G28550.4
AT2G28550.3
AT2G28550.1
AT2G28550.2
related to AP2.7
Chr4_-_9437206 0.16 AT4G16770.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr4_+_16451876 0.15 AT4G34410.1
redox responsive transcription factor 1
Chr5_-_26804249 0.15 AT5G67180.1
AT5G67180.3
AT5G67180.4
AT5G67180.2
target of early activation tagged (EAT) 3
Chr2_+_16886767 0.14 AT2G40435.2
AT2G40435.1
AT2G40435.3
transcription factor SCREAM-like protein
Chr2_-_19407098 0.14 AT2G47260.1
WRKY DNA-binding protein 23
Chr1_-_8310916 0.14 AT1G23390.1
Kelch repeat-containing F-box family protein
Chr1_-_6799764 0.13 AT1G19650.2
AT1G19650.1
AT1G19650.3
Sec14p-like phosphatidylinositol transfer family protein
Chr5_-_4693732 0.13 AT5G14550.2
AT5G14550.3
AT5G14550.4
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Chr2_-_6668046 0.12 AT2G15320.1
Leucine-rich repeat (LRR) family protein
Chr1_+_4877506 0.12 AT1G14280.1
phytochrome kinase substrate 2
Chr4_-_484524 0.11 AT4G01120.1
G-box binding factor 2
Chr4_+_10940662 0.11 AT4G20260.7
AT4G20260.9
AT4G20260.8
AT4G20260.10
AT4G20260.5
AT4G20260.6
AT4G20260.1
AT4G20260.4
AT4G20260.3
plasma-membrane associated cation-binding protein 1
Chr4_+_10940414 0.11 AT4G20260.2
plasma-membrane associated cation-binding protein 1
Chr3_-_1678968 0.10 AT3G05690.2
AT3G05690.1
nuclear factor Y, subunit A2
Chr1_-_371090 0.10 AT1G02070.1
zinc ion-binding protein
Chr1_-_3099830 0.10 AT1G09570.4
AT1G09570.3
phytochrome A
Chr1_-_3100695 0.10 AT1G09570.5
AT1G09570.1
AT1G09570.6
phytochrome A
Chr4_-_10529092 0.10 AT4G19240.1
hypothetical protein
Chr1_-_3100357 0.09 AT1G09570.2
phytochrome A
Chr3_-_11384145 0.09 AT3G29575.1
AT3G29575.4
AT3G29575.3
ABI five binding protein 3
Chr3_+_20673564 0.09 AT3G55710.1
UDP-Glycosyltransferase superfamily protein
Chr1_+_4907887 0.08 AT1G14350.2
AT1G14350.3
Duplicated homeodomain-like superfamily protein
Chr3_-_17579577 0.08 AT3G47680.1
DNA binding protein
Chr5_-_24292162 0.08 AT5G60400.2
AT5G60400.1
AT5G60400.3
hypothetical protein
Chr5_+_24910191 0.08 AT5G62000.2
AT5G62000.1
AT5G62000.3
AT5G62000.4
AT5G62000.5
auxin response factor 2
Chr2_-_8051316 0.08 AT2G18550.1
homeobox protein 21
Chr1_+_3681679 0.07 AT1G11050.1
Protein kinase superfamily protein
Chr1_-_26804292 0.07 AT1G71050.1
Heavy metal transport/detoxification superfamily protein
Chr4_-_9296089 0.07 AT4G16490.1
ARM repeat superfamily protein
Chr1_+_3957284 0.06 AT1G11730.1
Galactosyltransferase family protein
Chr5_+_17543991 0.06 AT5G43680.1
AT5G43680.2
hypothetical protein
Chr1_+_418416 0.06 AT1G02205.2
Fatty acid hydroxylase superfamily
Chr1_+_4908249 0.06 AT1G14350.1
AT1G14350.4
Duplicated homeodomain-like superfamily protein
Chr1_+_10229808 0.06 AT1G29270.1
transcription factor bHLH35-like protein
Chr5_-_24765511 0.05 AT5G61590.1
Integrase-type DNA-binding superfamily protein
Chr1_+_415074 0.05 AT1G02190.1
AT1G02190.2
Fatty acid hydroxylase superfamily
Chr1_+_10230085 0.05 AT1G29270.2
transcription factor bHLH35-like protein
Chr2_+_19673293 0.05 AT2G48110.1
reduced epidermal fluorescence 4
Chr2_-_17837618 0.05 AT2G42870.1
phy rapidly regulated 1
Chr5_-_25931384 0.04 AT5G64870.1
SPFH/Band 7/PHB domain-containing membrane-associated protein family
Chr4_+_10382856 0.04 AT4G18960.2
AT4G18960.4
AT4G18960.1
AT4G18960.3
K-box region and MADS-box transcription factor family protein
Chr2_-_17810265 0.04 AT2G42800.1
receptor like protein 29
Chr4_+_12909463 0.04 AT4G25170.1
AT4G25170.2
Uncharacterized conserved protein (UCP012943)
Chr1_-_27298649 0.04 AT1G72500.3
AT1G72500.2
AT1G72500.1
inter alpha-trypsin inhibitor, heavy chain-like protein
Chr3_+_5671018 0.04 AT3G16650.1
Transducin/WD40 repeat-like superfamily protein
Chr1_-_26052567 0.03 AT1G69295.1
plasmodesmata callose-binding protein 4
Chr4_+_13639963 0.03 AT4G27240.2
zinc finger (C2H2 type) family protein
Chr2_+_6018558 0.03 AT2G14210.2
AT2G14210.1
AGAMOUS-like 44
Chr2_-_8008681 0.03 AT2G18470.3
roline-rich extensin-like receptor kinase 4
Chr1_-_26052721 0.03 AT1G69295.2
plasmodesmata callose-binding protein 4
Chr4_+_13639641 0.02 AT4G27240.1
zinc finger (C2H2 type) family protein
Chr3_+_18635758 0.02 AT3G50270.1
HXXXD-type acyl-transferase family protein
Chr5_-_4694055 0.02 AT5G14550.1
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Chr4_+_7669948 0.02 AT4G13210.2
AT4G13210.1
Pectin lyase-like superfamily protein
Chr1_-_27749248 0.02 AT1G73805.1
Calmodulin binding protein-like protein
Chr1_-_19081451 0.02 AT1G51460.1
ABC-2 type transporter family protein
Chr5_-_20016857 0.02 AT5G49360.1
beta-xylosidase 1
Chr3_-_2383937 0.01 AT3G07450.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr5_-_230051 0.01 AT5G01600.1
ferretin 1
Chr5_-_18800115 0.01 AT5G46340.2
AT5G46340.1
O-acetyltransferase family protein
Chr2_-_8008126 0.01 AT2G18470.2
AT2G18470.1
AT2G18470.4
roline-rich extensin-like receptor kinase 4
Chr3_-_15775873 0.00 AT3G43960.1
Cysteine proteinases superfamily protein
Chr1_-_8727212 0.00 AT1G24625.1
zinc finger protein 7
Chr1_+_923390 0.00 AT1G03710.1
AT1G03710.2
Cystatin/monellin superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G36920

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0010597 green leaf volatile biosynthetic process(GO:0010597)
0.1 0.7 GO:0034763 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.1 0.4 GO:0042759 long-chain fatty acid biosynthetic process(GO:0042759)
0.1 0.3 GO:0010203 response to very low fluence red light stimulus(GO:0010203)
0.1 0.3 GO:0035264 multicellular organism growth(GO:0035264)
0.1 0.4 GO:0010321 regulation of vegetative phase change(GO:0010321)
0.1 0.2 GO:0031114 N-terminal protein lipidation(GO:0006498) N-terminal protein myristoylation(GO:0006499) protein myristoylation(GO:0018377) regulation of microtubule depolymerization(GO:0031114) negative regulation of microtubule polymerization(GO:0031115) cellular response to copper ion(GO:0071280) cellular response to iron ion(GO:0071281) intracellular transport of virus(GO:0075733) positive regulation of protein depolymerization(GO:1901881)
0.1 0.8 GO:0010077 maintenance of inflorescence meristem identity(GO:0010077)
0.1 0.3 GO:0010336 gibberellic acid homeostasis(GO:0010336)
0.1 0.2 GO:0035017 cuticle pattern formation(GO:0035017)
0.1 0.2 GO:0016320 endoplasmic reticulum membrane fusion(GO:0016320)
0.0 0.4 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.0 0.4 GO:0048363 mucilage pectin metabolic process(GO:0048363)
0.0 0.1 GO:0050878 regulation of body fluid levels(GO:0050878) multicellular organismal water homeostasis(GO:0050891)
0.0 0.1 GO:1904062 positive regulation of potassium ion transport(GO:0043268) regulation of potassium ion transmembrane transport(GO:1901379) regulation of cation transmembrane transport(GO:1904062)
0.0 0.1 GO:0055073 cadmium ion homeostasis(GO:0055073)
0.0 0.3 GO:0009641 shade avoidance(GO:0009641)
0.0 0.3 GO:0006284 base-excision repair(GO:0006284)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.7 GO:0009898 cytoplasmic side of plasma membrane(GO:0009898)
0.0 0.5 GO:0012511 monolayer-surrounded lipid storage body(GO:0012511)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.0 GO:0004848 ureidoglycolate hydrolase activity(GO:0004848)
0.1 0.4 GO:0016165 linoleate 13S-lipoxygenase activity(GO:0016165)
0.1 0.7 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.1 0.2 GO:0043325 phosphatidylinositol-3,4-bisphosphate binding(GO:0043325)
0.1 0.3 GO:0031516 far-red light photoreceptor activity(GO:0031516)
0.1 0.2 GO:0080097 L-tryptophan:pyruvate aminotransferase activity(GO:0080097)
0.1 0.5 GO:1990137 plant seed peroxidase activity(GO:1990137)
0.0 0.3 GO:0043733 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.0 1.0 GO:0016881 acid-amino acid ligase activity(GO:0016881)
0.0 0.1 GO:0071771 octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465)
0.0 0.1 GO:0016034 maleylacetoacetate isomerase activity(GO:0016034)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 PID E2F PATHWAY E2F transcription factor network
0.0 0.1 ST WNT BETA CATENIN PATHWAY Wnt/beta-catenin Pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 REACTOME G0 AND EARLY G1 Genes involved in G0 and Early G1