GSE130291:vernalization in Arabidopsis thaliana
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT4G36920
|
AT4G36920 | Integrase-type DNA-binding superfamily protein |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
AP2 | arTal_v1_Chr4_+_17400610_17400724 | -0.16 | 5.8e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
Chr2_-_18811085 | 0.78 |
AT2G45660.2
AT2G45660.1 |
AGL20
|
AGAMOUS-like 20 |
Chr5_-_22115539 | 0.60 |
AT5G54470.1
|
BBX29
|
B-box type zinc finger family protein |
Chr4_-_1500100 | 0.52 |
AT4G03400.2
|
DFL2
|
Auxin-responsive GH3 family protein |
Chr4_-_14393381 | 0.52 |
AT4G29190.1
|
OZF2
|
Zinc finger C-x8-C-x5-C-x3-H type family protein |
Chr2_-_14146471 | 0.50 |
AT2G33380.2
AT2G33380.1 |
RD20
|
Caleosin-related family protein |
Chr4_-_1501599 | 0.49 |
AT4G03400.1
|
DFL2
|
Auxin-responsive GH3 family protein |
Chr2_+_15050677 | 0.49 |
AT2G35820.1
|
AT2G35820
|
ureidoglycolate hydrolase |
Chr2_+_15050498 | 0.49 |
AT2G35820.2
|
AT2G35820
|
ureidoglycolate hydrolase |
Chr5_+_6424779 | 0.47 |
AT5G19140.3
|
AILP1
|
aluminum induced protein with YGL and LRDR motifs |
Chr5_+_6423153 | 0.45 |
AT5G19140.2
AT5G19140.1 |
AILP1
|
aluminum induced protein with YGL and LRDR motifs |
Chr1_-_26796529 | 0.43 |
AT1G71030.1
AT1G71030.2 |
MYBL2
|
MYB-like 2 |
Chr3_+_16525245 | 0.43 |
AT3G45140.1
AT3G45140.2 |
LOX2
|
lipoxygenase 2 |
Chr2_+_17507343 | 0.41 |
AT2G41940.1
|
ZFP8
|
zinc finger protein 8 |
Chr4_-_13019400 | 0.40 |
AT4G25480.1
|
DREB1A
|
dehydration response element B1A |
Chr5_+_25040540 | 0.39 |
AT5G62360.1
|
AT5G62360
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
Chr1_+_19806263 | 0.38 |
AT1G53160.1
AT1G53160.2 AT1G53160.3 |
SPL4
|
squamosa promoter binding protein-like 4 |
Chr3_+_3923735 | 0.34 |
AT3G12320.2
|
AT3G12320
|
hypothetical protein |
Chr4_-_2332814 | 0.34 |
AT4G04630.1
|
AT4G04630
|
senescence regulator (Protein of unknown function, DUF584) |
Chr5_-_18026077 | 0.34 |
AT5G44680.1
|
AT5G44680
|
DNA glycosylase superfamily protein |
Chr3_+_16818347 | 0.34 |
AT3G45780.2
|
PHOT1
|
phototropin 1 |
Chr3_+_16816721 | 0.33 |
AT3G45780.1
|
PHOT1
|
phototropin 1 |
Chr3_+_3923969 | 0.32 |
AT3G12320.3
|
AT3G12320
|
hypothetical protein |
Chr3_+_3923515 | 0.32 |
AT3G12320.1
|
AT3G12320
|
hypothetical protein |
Chr1_-_9649323 | 0.32 |
AT1G27730.1
|
STZ
|
salt tolerance zinc finger |
Chr1_+_4542168 | 0.29 |
AT1G13260.1
|
RAV1
|
related to ABI3/VP1 1 |
Chr3_+_18840411 | 0.28 |
AT3G50700.1
|
IDD2
|
indeterminate(ID)-domain 2 |
Chr2_+_19104632 | 0.27 |
AT2G46530.1
AT2G46530.2 |
ARF11
|
auxin response factor 11 |
Chr5_-_1994824 | 0.27 |
AT5G06530.2
AT5G06530.3 AT5G06530.4 AT5G06530.1 |
ABCG22
|
ABC-2 type transporter family protein |
Chr1_-_18628452 | 0.26 |
AT1G50290.1
|
AT1G50290
|
hypothetical protein |
Chr2_+_19105112 | 0.25 |
AT2G46530.3
|
ARF11
|
auxin response factor 11 |
Chr4_-_9834859 | 0.25 |
AT4G17670.1
|
AT4G17670
|
senescence-associated family protein (DUF581) |
Chr3_+_6710349 | 0.25 |
AT3G19370.3
AT3G19370.1 |
AT3G19370
|
filament-like protein (DUF869) |
Chr1_+_26604855 | 0.23 |
AT1G70560.1
|
TAA1
|
tryptophan aminotransferase of Arabidopsis 1 |
Chr3_+_22434864 | 0.23 |
AT3G60690.1
|
AT3G60690
|
SAUR-like auxin-responsive protein family |
Chr3_+_6710720 | 0.23 |
AT3G19370.2
|
AT3G19370
|
filament-like protein (DUF869) |
Chr3_-_19453212 | 0.23 |
AT3G52480.1
|
AT3G52480
|
transmembrane protein |
Chr2_+_16765920 | 0.21 |
AT2G40130.2
|
AT2G40130
|
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein |
Chr4_+_17369179 | 0.21 |
AT4G36870.3
AT4G36870.1 AT4G36870.4 |
BLH2
|
BEL1-like homeodomain 2 |
Chr5_+_18264616 | 0.20 |
AT5G45160.1
|
RL2
|
Root hair defective 3 GTP-binding protein (RHD3) |
Chr2_+_16765709 | 0.20 |
AT2G40130.1
|
AT2G40130
|
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein |
Chr5_-_1086761 | 0.20 |
AT5G04020.1
AT5G04020.2 |
AT5G04020
|
calmodulin binding protein |
Chr1_+_19783185 | 0.19 |
AT1G53090.3
AT1G53090.1 AT1G53090.2 AT1G53090.5 AT1G53090.4 |
SPA4
|
SPA1-related 4 |
Chr3_-_9486924 | 0.19 |
AT3G25905.1
|
CLE27
|
CLAVATA3/ESR-RELATED 27 |
Chr1_+_26141726 | 0.17 |
AT1G69530.2
AT1G69530.1 AT1G69530.3 AT1G69530.5 AT1G69530.4 |
EXPA1
|
expansin A1 |
Chr3_-_1257017 | 0.17 |
AT3G04620.1
|
DAN1
|
Alba DNA/RNA-binding protein |
Chr5_+_4974671 | 0.17 |
AT5G15310.2
AT5G15310.4 AT5G15310.3 AT5G15310.1 |
MYB16
|
myb domain protein 16 |
Chr1_-_6683533 | 0.17 |
AT1G19330.3
AT1G19330.1 AT1G19330.2 |
AT1G19330
|
histone deacetylase complex subunit |
Chr4_+_17368915 | 0.16 |
AT4G36870.2
|
BLH2
|
BEL1-like homeodomain 2 |
Chr2_-_12228543 | 0.16 |
AT2G28550.6
AT2G28550.5 AT2G28550.4 AT2G28550.3 AT2G28550.1 AT2G28550.2 |
RAP2.7
|
related to AP2.7 |
Chr4_-_9437206 | 0.16 |
AT4G16770.1
|
AT4G16770
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Chr4_+_16451876 | 0.15 |
AT4G34410.1
|
RRTF1
|
redox responsive transcription factor 1 |
Chr5_-_26804249 | 0.15 |
AT5G67180.1
AT5G67180.3 AT5G67180.4 AT5G67180.2 |
TOE3
|
target of early activation tagged (EAT) 3 |
Chr2_+_16886767 | 0.14 |
AT2G40435.2
AT2G40435.1 AT2G40435.3 |
AT2G40435
|
transcription factor SCREAM-like protein |
Chr2_-_19407098 | 0.14 |
AT2G47260.1
|
WRKY23
|
WRKY DNA-binding protein 23 |
Chr1_-_8310916 | 0.14 |
AT1G23390.1
|
AT1G23390
|
Kelch repeat-containing F-box family protein |
Chr1_-_6799764 | 0.13 |
AT1G19650.2
AT1G19650.1 AT1G19650.3 |
AT1G19650
|
Sec14p-like phosphatidylinositol transfer family protein |
Chr5_-_4693732 | 0.13 |
AT5G14550.2
AT5G14550.3 AT5G14550.4 |
AT5G14550
|
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
Chr2_-_6668046 | 0.12 |
AT2G15320.1
|
AT2G15320
|
Leucine-rich repeat (LRR) family protein |
Chr1_+_4877506 | 0.12 |
AT1G14280.1
|
PKS2
|
phytochrome kinase substrate 2 |
Chr4_-_484524 | 0.11 |
AT4G01120.1
|
GBF2
|
G-box binding factor 2 |
Chr4_+_10940662 | 0.11 |
AT4G20260.7
AT4G20260.9 AT4G20260.8 AT4G20260.10 AT4G20260.5 AT4G20260.6 AT4G20260.1 AT4G20260.4 AT4G20260.3 |
PCAP1
|
plasma-membrane associated cation-binding protein 1 |
Chr4_+_10940414 | 0.11 |
AT4G20260.2
|
PCAP1
|
plasma-membrane associated cation-binding protein 1 |
Chr3_-_1678968 | 0.10 |
AT3G05690.2
AT3G05690.1 |
NF-YA2
|
nuclear factor Y, subunit A2 |
Chr1_-_371090 | 0.10 |
AT1G02070.1
|
AT1G02070
|
zinc ion-binding protein |
Chr1_-_3099830 | 0.10 |
AT1G09570.4
AT1G09570.3 |
PHYA
|
phytochrome A |
Chr1_-_3100695 | 0.10 |
AT1G09570.5
AT1G09570.1 AT1G09570.6 |
PHYA
|
phytochrome A |
Chr4_-_10529092 | 0.10 |
AT4G19240.1
|
AT4G19240
|
hypothetical protein |
Chr1_-_3100357 | 0.09 |
AT1G09570.2
|
PHYA
|
phytochrome A |
Chr3_-_11384145 | 0.09 |
AT3G29575.1
AT3G29575.4 AT3G29575.3 |
AFP3
|
ABI five binding protein 3 |
Chr3_+_20673564 | 0.09 |
AT3G55710.1
|
AT3G55710
|
UDP-Glycosyltransferase superfamily protein |
Chr1_+_4907887 | 0.08 |
AT1G14350.2
AT1G14350.3 |
FLP
|
Duplicated homeodomain-like superfamily protein |
Chr3_-_17579577 | 0.08 |
AT3G47680.1
|
AT3G47680
|
DNA binding protein |
Chr5_-_24292162 | 0.08 |
AT5G60400.2
AT5G60400.1 AT5G60400.3 |
AT5G60400
|
hypothetical protein |
Chr5_+_24910191 | 0.08 |
AT5G62000.2
AT5G62000.1 AT5G62000.3 AT5G62000.4 AT5G62000.5 |
ARF2
|
auxin response factor 2 |
Chr2_-_8051316 | 0.08 |
AT2G18550.1
|
HB21
|
homeobox protein 21 |
Chr1_+_3681679 | 0.07 |
AT1G11050.1
|
AT1G11050
|
Protein kinase superfamily protein |
Chr1_-_26804292 | 0.07 |
AT1G71050.1
|
HIPP20
|
Heavy metal transport/detoxification superfamily protein |
Chr4_-_9296089 | 0.07 |
AT4G16490.1
|
AT4G16490
|
ARM repeat superfamily protein |
Chr1_+_3957284 | 0.06 |
AT1G11730.1
|
AT1G11730
|
Galactosyltransferase family protein |
Chr5_+_17543991 | 0.06 |
AT5G43680.1
AT5G43680.2 |
AT5G43680
|
hypothetical protein |
Chr1_+_418416 | 0.06 |
AT1G02205.2
|
CER1
|
Fatty acid hydroxylase superfamily |
Chr1_+_4908249 | 0.06 |
AT1G14350.1
AT1G14350.4 |
FLP
|
Duplicated homeodomain-like superfamily protein |
Chr1_+_10229808 | 0.06 |
AT1G29270.1
|
AT1G29270
|
transcription factor bHLH35-like protein |
Chr5_-_24765511 | 0.05 |
AT5G61590.1
|
AT5G61590
|
Integrase-type DNA-binding superfamily protein |
Chr1_+_415074 | 0.05 |
AT1G02190.1
AT1G02190.2 |
AT1G02190
|
Fatty acid hydroxylase superfamily |
Chr1_+_10230085 | 0.05 |
AT1G29270.2
|
AT1G29270
|
transcription factor bHLH35-like protein |
Chr2_+_19673293 | 0.05 |
AT2G48110.1
|
REF4
|
reduced epidermal fluorescence 4 |
Chr2_-_17837618 | 0.05 |
AT2G42870.1
|
PAR1
|
phy rapidly regulated 1 |
Chr5_-_25931384 | 0.04 |
AT5G64870.1
|
AT5G64870
|
SPFH/Band 7/PHB domain-containing membrane-associated protein family |
Chr4_+_10382856 | 0.04 |
AT4G18960.2
AT4G18960.4 AT4G18960.1 AT4G18960.3 |
AG
|
K-box region and MADS-box transcription factor family protein |
Chr2_-_17810265 | 0.04 |
AT2G42800.1
|
RLP29
|
receptor like protein 29 |
Chr4_+_12909463 | 0.04 |
AT4G25170.1
AT4G25170.2 |
AT4G25170
|
Uncharacterized conserved protein (UCP012943) |
Chr1_-_27298649 | 0.04 |
AT1G72500.3
AT1G72500.2 AT1G72500.1 |
AT1G72500
|
inter alpha-trypsin inhibitor, heavy chain-like protein |
Chr3_+_5671018 | 0.04 |
AT3G16650.1
|
AT3G16650
|
Transducin/WD40 repeat-like superfamily protein |
Chr1_-_26052567 | 0.03 |
AT1G69295.1
|
PDCB4
|
plasmodesmata callose-binding protein 4 |
Chr4_+_13639963 | 0.03 |
AT4G27240.2
|
AT4G27240
|
zinc finger (C2H2 type) family protein |
Chr2_+_6018558 | 0.03 |
AT2G14210.2
AT2G14210.1 |
AGL44
|
AGAMOUS-like 44 |
Chr2_-_8008681 | 0.03 |
AT2G18470.3
|
PERK4
|
roline-rich extensin-like receptor kinase 4 |
Chr1_-_26052721 | 0.03 |
AT1G69295.2
|
PDCB4
|
plasmodesmata callose-binding protein 4 |
Chr4_+_13639641 | 0.02 |
AT4G27240.1
|
AT4G27240
|
zinc finger (C2H2 type) family protein |
Chr3_+_18635758 | 0.02 |
AT3G50270.1
|
AT3G50270
|
HXXXD-type acyl-transferase family protein |
Chr5_-_4694055 | 0.02 |
AT5G14550.1
|
AT5G14550
|
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
Chr4_+_7669948 | 0.02 |
AT4G13210.2
AT4G13210.1 |
AT4G13210
|
Pectin lyase-like superfamily protein |
Chr1_-_27749248 | 0.02 |
AT1G73805.1
|
SARD1
|
Calmodulin binding protein-like protein |
Chr1_-_19081451 | 0.02 |
AT1G51460.1
|
ABCG13
|
ABC-2 type transporter family protein |
Chr5_-_20016857 | 0.02 |
AT5G49360.1
|
BXL1
|
beta-xylosidase 1 |
Chr3_-_2383937 | 0.01 |
AT3G07450.1
|
AT3G07450
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
Chr5_-_230051 | 0.01 |
AT5G01600.1
|
FER1
|
ferretin 1 |
Chr5_-_18800115 | 0.01 |
AT5G46340.2
AT5G46340.1 |
RWA1
|
O-acetyltransferase family protein |
Chr2_-_8008126 | 0.01 |
AT2G18470.2
AT2G18470.1 AT2G18470.4 |
PERK4
|
roline-rich extensin-like receptor kinase 4 |
Chr3_-_15775873 | 0.00 |
AT3G43960.1
|
AT3G43960
|
Cysteine proteinases superfamily protein |
Chr1_-_8727212 | 0.00 |
AT1G24625.1
|
ZFP7
|
zinc finger protein 7 |
Chr1_+_923390 | 0.00 |
AT1G03710.1
AT1G03710.2 |
AT1G03710
|
Cystatin/monellin superfamily protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.4 | GO:0010597 | green leaf volatile biosynthetic process(GO:0010597) |
0.1 | 0.7 | GO:0034763 | negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960) |
0.1 | 0.4 | GO:0042759 | long-chain fatty acid biosynthetic process(GO:0042759) |
0.1 | 0.3 | GO:0010203 | response to very low fluence red light stimulus(GO:0010203) |
0.1 | 0.3 | GO:0035264 | multicellular organism growth(GO:0035264) |
0.1 | 0.4 | GO:0010321 | regulation of vegetative phase change(GO:0010321) |
0.1 | 0.2 | GO:0031114 | N-terminal protein lipidation(GO:0006498) N-terminal protein myristoylation(GO:0006499) protein myristoylation(GO:0018377) regulation of microtubule depolymerization(GO:0031114) negative regulation of microtubule polymerization(GO:0031115) cellular response to copper ion(GO:0071280) cellular response to iron ion(GO:0071281) intracellular transport of virus(GO:0075733) positive regulation of protein depolymerization(GO:1901881) |
0.1 | 0.8 | GO:0010077 | maintenance of inflorescence meristem identity(GO:0010077) |
0.1 | 0.3 | GO:0010336 | gibberellic acid homeostasis(GO:0010336) |
0.1 | 0.2 | GO:0035017 | cuticle pattern formation(GO:0035017) |
0.1 | 0.2 | GO:0016320 | endoplasmic reticulum membrane fusion(GO:0016320) |
0.0 | 0.4 | GO:0010023 | proanthocyanidin biosynthetic process(GO:0010023) |
0.0 | 0.4 | GO:0048363 | mucilage pectin metabolic process(GO:0048363) |
0.0 | 0.1 | GO:0050878 | regulation of body fluid levels(GO:0050878) multicellular organismal water homeostasis(GO:0050891) |
0.0 | 0.1 | GO:1904062 | positive regulation of potassium ion transport(GO:0043268) regulation of potassium ion transmembrane transport(GO:1901379) regulation of cation transmembrane transport(GO:1904062) |
0.0 | 0.1 | GO:0055073 | cadmium ion homeostasis(GO:0055073) |
0.0 | 0.3 | GO:0009641 | shade avoidance(GO:0009641) |
0.0 | 0.3 | GO:0006284 | base-excision repair(GO:0006284) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.7 | GO:0009898 | cytoplasmic side of plasma membrane(GO:0009898) |
0.0 | 0.5 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.0 | GO:0004848 | ureidoglycolate hydrolase activity(GO:0004848) |
0.1 | 0.4 | GO:0016165 | linoleate 13S-lipoxygenase activity(GO:0016165) |
0.1 | 0.7 | GO:0009882 | blue light photoreceptor activity(GO:0009882) |
0.1 | 0.2 | GO:0043325 | phosphatidylinositol-3,4-bisphosphate binding(GO:0043325) |
0.1 | 0.3 | GO:0031516 | far-red light photoreceptor activity(GO:0031516) |
0.1 | 0.2 | GO:0080097 | L-tryptophan:pyruvate aminotransferase activity(GO:0080097) |
0.1 | 0.5 | GO:1990137 | plant seed peroxidase activity(GO:1990137) |
0.0 | 0.3 | GO:0043733 | alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733) |
0.0 | 1.0 | GO:0016881 | acid-amino acid ligase activity(GO:0016881) |
0.0 | 0.1 | GO:0071771 | octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465) |
0.0 | 0.1 | GO:0016034 | maleylacetoacetate isomerase activity(GO:0016034) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.4 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 0.1 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.4 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |