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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G36920
Z-value: 0.58
Transcription factors associated with AT4G36920
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G36920
|
AT4G36920 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AP2 | arTal_v1_Chr4_+_17400610_17400724 | -0.16 | 5.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_18811085_18811125 Show fit | 0.78 |
AT2G45660.2
AT2G45660.1 |
AGAMOUS-like 20 |
|
| arTal_v1_Chr5_-_22115539_22115539 Show fit | 0.60 |
AT5G54470.1
|
B-box type zinc finger family protein |
|
| arTal_v1_Chr4_-_1500100_1500100 Show fit | 0.52 |
AT4G03400.2
|
Auxin-responsive GH3 family protein |
|
| arTal_v1_Chr4_-_14393381_14393381 Show fit | 0.52 |
AT4G29190.1
|
Zinc finger C-x8-C-x5-C-x3-H type family protein |
|
| arTal_v1_Chr2_-_14146471_14146555 Show fit | 0.50 |
AT2G33380.2
AT2G33380.1 |
Caleosin-related family protein |
|
| arTal_v1_Chr4_-_1501599_1501599 Show fit | 0.49 |
AT4G03400.1
|
Auxin-responsive GH3 family protein |
|
| arTal_v1_Chr2_+_15050677_15050677 Show fit | 0.49 |
AT2G35820.1
|
ureidoglycolate hydrolase |
|
| arTal_v1_Chr2_+_15050498_15050498 Show fit | 0.49 |
AT2G35820.2
|
ureidoglycolate hydrolase |
|
| arTal_v1_Chr5_+_6424779_6424779 Show fit | 0.47 |
AT5G19140.3
|
aluminum induced protein with YGL and LRDR motifs |
|
| arTal_v1_Chr5_+_6423153_6423269 Show fit | 0.45 |
AT5G19140.2
AT5G19140.1 |
aluminum induced protein with YGL and LRDR motifs |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G36920
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | GO:0010077 | maintenance of inflorescence meristem identity(GO:0010077) |
| 0.1 | 0.7 | GO:0034763 | negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960) |
| 0.1 | 0.4 | GO:0010597 | green leaf volatile biosynthetic process(GO:0010597) |
| 0.1 | 0.4 | GO:0042759 | long-chain fatty acid biosynthetic process(GO:0042759) |
| 0.1 | 0.4 | GO:0010321 | regulation of vegetative phase change(GO:0010321) |
| 0.0 | 0.4 | GO:0010023 | proanthocyanidin biosynthetic process(GO:0010023) |
| 0.0 | 0.4 | GO:0048363 | mucilage pectin metabolic process(GO:0048363) |
| 0.1 | 0.3 | GO:0010203 | response to very low fluence red light stimulus(GO:0010203) |
| 0.1 | 0.3 | GO:0035264 | multicellular organism growth(GO:0035264) |
| 0.1 | 0.3 | GO:0010336 | gibberellic acid homeostasis(GO:0010336) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.7 | GO:0009898 | cytoplasmic side of plasma membrane(GO:0009898) |
| 0.0 | 0.5 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.0 | GO:0004848 | ureidoglycolate hydrolase activity(GO:0004848) |
| 0.0 | 1.0 | GO:0016881 | acid-amino acid ligase activity(GO:0016881) |
| 0.1 | 0.7 | GO:0009882 | blue light photoreceptor activity(GO:0009882) |
| 0.1 | 0.5 | GO:1990137 | plant seed peroxidase activity(GO:1990137) |
| 0.1 | 0.4 | GO:0016165 | linoleate 13S-lipoxygenase activity(GO:0016165) |
| 0.1 | 0.3 | GO:0031516 | far-red light photoreceptor activity(GO:0031516) |
| 0.0 | 0.3 | GO:0043733 | alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733) |
| 0.1 | 0.2 | GO:0043325 | phosphatidylinositol-3,4-bisphosphate binding(GO:0043325) |
| 0.1 | 0.2 | GO:0080097 | L-tryptophan:pyruvate aminotransferase activity(GO:0080097) |
| 0.0 | 0.1 | GO:0071771 | octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | PID E2F PATHWAY | E2F transcription factor network |
| 0.0 | 0.1 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |