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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G36740
Z-value: 0.98
Transcription factors associated with AT4G36740
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G36740
|
AT4G36740 | homeobox protein 40 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB40 | arTal_v1_Chr4_-_17316374_17316441 | -0.02 | 9.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_7421828_7421828 Show fit | 1.51 |
AT4G12520.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_-_13317640_13317640 Show fit | 1.34 |
AT4G26320.1
|
arabinogalactan protein 13 |
|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 1.34 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr5_+_1629610_1629610 Show fit | 1.33 |
AT5G05500.1
|
Pollen Ole e 1 allergen and extensin family protein |
|
| arTal_v1_Chr5_+_9200271_9200271 Show fit | 1.33 |
AT5G26260.1
|
TRAF-like family protein |
|
| arTal_v1_Chr4_-_14827211_14827211 Show fit | 1.32 |
AT4G30280.1
|
xyloglucan endotransglucosylase/hydrolase 18 |
|
| arTal_v1_Chr4_+_9698940_9698940 Show fit | 1.30 |
AT4G17340.1
|
tonoplast intrinsic protein 2;2 |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 1.29 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr5_-_16998925_16998925 Show fit | 1.21 |
AT5G42510.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 1.16 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G36740
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 6.7 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 6.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.0 | 5.2 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 4.5 | GO:0048767 | root hair elongation(GO:0048767) |
| 0.1 | 3.9 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.1 | 3.4 | GO:0030091 | protein repair(GO:0030091) |
| 0.3 | 3.3 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.6 | 2.9 | GO:0007043 | cell-cell junction assembly(GO:0007043) |
| 0.1 | 2.6 | GO:0090487 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 0.6 | 2.5 | GO:0080003 | thalianol metabolic process(GO:0080003) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 54.8 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 23.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 21.2 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 8.6 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.0 | 6.7 | GO:0048046 | apoplast(GO:0048046) |
| 0.3 | 3.0 | GO:0048226 | Casparian strip(GO:0048226) |
| 0.1 | 2.8 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 2.7 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 2.2 | GO:0005811 | lipid particle(GO:0005811) |
| 0.0 | 1.3 | GO:0005746 | mitochondrial respiratory chain(GO:0005746) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 7.3 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.1 | 6.1 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.6 | 5.1 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.0 | 4.9 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.1 | 3.9 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.3 | 3.7 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.2 | 3.7 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.2 | 3.3 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.1 | 3.2 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.1 | 3.2 | GO:0004364 | glutathione transferase activity(GO:0004364) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 3.4 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.5 | 2.9 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
| 0.2 | 0.9 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.3 | 0.8 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.7 | PID P73PATHWAY | p73 transcription factor network |
| 0.1 | 0.6 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.2 | 0.5 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.2 | 0.5 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.3 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.3 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 3.2 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.6 | 1.9 | REACTOME NOD1 2 SIGNALING PATHWAY | Genes involved in NOD1/2 Signaling Pathway |
| 0.1 | 1.3 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
| 0.2 | 0.9 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.2 | 0.8 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 0.5 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.1 | 0.4 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.0 | 0.4 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.3 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.1 | 0.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |