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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G36620
Z-value: 0.37
Transcription factors associated with AT4G36620
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G36620
|
AT4G36620 | GATA transcription factor 19 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| GATA19 | arTal_v1_Chr4_-_17269999_17269999 | 0.53 | 5.3e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_82182_82182 Show fit | 0.92 |
AT3G01260.1
|
Galactose mutarotase-like superfamily protein |
|
| arTal_v1_Chr3_-_2569700_2569700 Show fit | 0.65 |
AT3G08040.2
AT3G08040.1 |
MATE efflux family protein |
|
| arTal_v1_Chr3_-_11269228_11269356 Show fit | 0.39 |
AT3G29360.2
AT3G29360.1 |
UDP-glucose 6-dehydrogenase family protein |
|
| arTal_v1_Chr3_-_2607573_2607573 Show fit | 0.31 |
AT3G08580.1
|
ADP/ATP carrier 1 |
|
| arTal_v1_Chr3_+_3203988_3203988 Show fit | 0.31 |
AT3G10340.1
|
phenylalanine ammonia-lyase 4 |
|
| arTal_v1_Chr3_-_2607895_2607895 Show fit | 0.31 |
AT3G08580.2
|
ADP/ATP carrier 1 |
|
| arTal_v1_Chr5_+_4370692_4370692 Show fit | 0.29 |
AT5G13580.1
|
ABC-2 type transporter family protein |
|
| arTal_v1_Chr3_-_1756924_1756924 Show fit | 0.28 |
AT3G05880.1
|
Low temperature and salt responsive protein family |
|
| arTal_v1_Chr5_-_556623_556623 Show fit | 0.27 |
AT5G02500.1
|
heat shock cognate protein 70-1 |
|
| arTal_v1_Chr5_-_556442_556442 Show fit | 0.27 |
AT5G02500.2
|
heat shock cognate protein 70-1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G36620
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.9 | GO:0033499 | galactose catabolic process(GO:0019388) galactose catabolic process via UDP-galactose(GO:0033499) |
| 0.2 | 0.8 | GO:0030203 | aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203) |
| 0.0 | 0.7 | GO:0006879 | cellular iron ion homeostasis(GO:0006879) |
| 0.0 | 0.7 | GO:0042026 | protein refolding(GO:0042026) |
| 0.0 | 0.6 | GO:0015865 | purine nucleotide transport(GO:0015865) |
| 0.0 | 0.5 | GO:0031204 | posttranslational protein targeting to membrane, translocation(GO:0031204) |
| 0.1 | 0.3 | GO:0010372 | positive regulation of gibberellin biosynthetic process(GO:0010372) |
| 0.1 | 0.3 | GO:0071163 | DNA replication preinitiation complex assembly(GO:0071163) |
| 0.1 | 0.3 | GO:0009800 | cinnamic acid biosynthetic process(GO:0009800) |
| 0.1 | 0.2 | GO:0010289 | homogalacturonan biosynthetic process(GO:0010289) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | GO:0031205 | endoplasmic reticulum Sec complex(GO:0031205) |
| 0.0 | 0.3 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.0 | 0.2 | GO:0018444 | translation release factor complex(GO:0018444) |
| 0.0 | 0.2 | GO:0005853 | eukaryotic translation elongation factor 1 complex(GO:0005853) |
| 0.0 | 0.2 | GO:0001673 | male germ cell nucleus(GO:0001673) |
| 0.0 | 0.2 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.0 | 0.2 | GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment(GO:0005793) |
| 0.0 | 0.2 | GO:0005758 | mitochondrial intermembrane space(GO:0005758) |
| 0.0 | 0.1 | GO:0000220 | vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220) |
| 0.0 | 0.1 | GO:0017119 | Golgi transport complex(GO:0017119) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 0.9 | GO:0004034 | aldose 1-epimerase activity(GO:0004034) |
| 0.2 | 0.8 | GO:0003979 | UDP-glucose 6-dehydrogenase activity(GO:0003979) |
| 0.0 | 0.7 | GO:0005381 | iron ion transmembrane transporter activity(GO:0005381) |
| 0.1 | 0.6 | GO:0005471 | ATP:ADP antiporter activity(GO:0005471) |
| 0.0 | 0.5 | GO:0005086 | ARF guanyl-nucleotide exchange factor activity(GO:0005086) |
| 0.0 | 0.5 | GO:0002020 | protease binding(GO:0002020) |
| 0.0 | 0.4 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.1 | 0.3 | GO:0045548 | phenylalanine ammonia-lyase activity(GO:0045548) |
| 0.1 | 0.3 | GO:0070182 | DNA polymerase binding(GO:0070182) |
| 0.0 | 0.2 | GO:0004614 | phosphoglucomutase activity(GO:0004614) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | SIG CHEMOTAXIS | Genes related to chemotaxis |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.2 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
| 0.0 | 0.1 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |