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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT4G36620

Z-value: 0.37

Transcription factors associated with AT4G36620

Gene Symbol Gene ID Gene Info
AT4G36620 GATA transcription factor 19

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
GATA19arTal_v1_Chr4_-_17269999_172699990.535.3e-02Click!

Activity profile of AT4G36620 motif

Sorted Z-values of AT4G36620 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_-_82182 0.92 AT3G01260.1
Galactose mutarotase-like superfamily protein
Chr3_-_2569700 0.65 AT3G08040.2
AT3G08040.1
MATE efflux family protein
Chr3_-_11269228 0.39 AT3G29360.2
AT3G29360.1
UDP-glucose 6-dehydrogenase family protein
Chr3_-_2607573 0.31 AT3G08580.1
ADP/ATP carrier 1
Chr3_+_3203988 0.31 AT3G10340.1
phenylalanine ammonia-lyase 4
Chr3_-_2607895 0.31 AT3G08580.2
ADP/ATP carrier 1
Chr5_+_4370692 0.29 AT5G13580.1
ABC-2 type transporter family protein
Chr3_-_1756924 0.28 AT3G05880.1
Low temperature and salt responsive protein family
Chr5_-_556623 0.27 AT5G02500.1
heat shock cognate protein 70-1
Chr5_-_556442 0.27 AT5G02500.2
heat shock cognate protein 70-1
Chr4_+_13444797 0.26 AT4G26650.1
AT4G26650.2
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr5_+_1399395 0.26 AT5G04820.1
ovate family protein 13
Chr2_+_13328862 0.26 AT2G31270.1
CDT1-like protein A
Chr1_+_27283628 0.26 AT1G72470.1
exocyst subunit exo70 family protein D1
Chr1_-_7830275 0.25 AT1G22180.1
AT1G22180.3
AT1G22180.2
AT1G22180.4
Sec14p-like phosphatidylinositol transfer family protein
Chr1_+_30187920 0.23 AT1G80290.1
Nucleotide-diphospho-sugar transferases superfamily protein
Chr3_+_2455239 0.22 AT3G07680.1
emp24/gp25L/p24 family/GOLD family protein
Chr1_-_1191458 0.22 AT1G04410.1
Lactate/malate dehydrogenase family protein
Chr5_+_24137225 0.22 AT5G59940.1
Cysteine/Histidine-rich C1 domain family protein
Chr3_+_22340859 0.22 AT3G60450.2
AT3G60450.1
Phosphoglycerate mutase family protein
Chr2_+_18408579 0.22 AT2G44600.1
hypothetical protein
Chr3_+_9154508 0.22 AT3G25140.1
Nucleotide-diphospho-sugar transferases superfamily protein
Chr1_+_30188364 0.21 AT1G80290.2
Nucleotide-diphospho-sugar transferases superfamily protein
Chr5_-_19304737 0.21 AT5G47620.3
AT5G47620.1
AT5G47620.4
AT5G47620.5
AT5G47620.2
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr2_-_14568799 0.20 AT2G34585.1
transmembrane protein
Chr1_+_8219808 0.20 AT1G23190.1
Phosphoglucomutase/phosphomannomutase family protein
Chr5_-_24318241 0.20 AT5G60460.1
Preprotein translocase Sec, Sec61-beta subunit protein
Chr1_+_8079287 0.20 AT1G22840.1
AT1G22840.2
CYTOCHROME C-1
Chr5_-_19388562 0.20 AT5G47880.2
AT5G47880.1
eukaryotic release factor 1-1
Chr2_+_18309022 0.20 AT2G44310.1
Calcium-binding EF-hand family protein
Chr3_-_20229214 0.19 AT3G54650.1
RNI-like superfamily protein
Chr2_-_14078744 0.19 AT2G33210.2
AT2G33210.1
heat shock protein 60-2
Chr5_-_24317935 0.19 AT5G60460.2
Preprotein translocase Sec, Sec61-beta subunit protein
Chr3_+_20344785 0.19 AT3G54920.1
Pectin lyase-like superfamily protein
Chr5_-_5030245 0.18 AT5G15490.1
UDP-glucose 6-dehydrogenase family protein
Chr5_+_15742543 0.18 AT5G39320.1
UDP-glucose 6-dehydrogenase family protein
Chr1_-_13031375 0.17 AT1G35430.1
transmembrane protein
Chr4_+_128581 0.17 AT4G00300.1
receptor-like kinase
Chr5_-_2325419 0.17 AT5G07350.2
AT5G07350.1
TUDOR-SN protein 1
Chr1_+_21042951 0.16 AT1G56220.4
AT1G56220.5
AT1G56220.3
Dormancy/auxin associated family protein
Chr1_+_21043348 0.16 AT1G56220.2
AT1G56220.1
Dormancy/auxin associated family protein
Chr2_+_7872201 0.16 AT2G18110.1
Translation elongation factor EF1B/ribosomal protein S6 family protein
Chr3_+_9182616 0.15 AT3G25220.1
FK506-binding protein 15 kD-1
Chr5_-_5024750 0.14 AT5G15470.1
galacturonosyltransferase 14
Chr3_+_1221422 0.14 AT3G04530.1
phosphoenolpyruvate carboxylase kinase 2
Chr3_-_1914392 0.14 AT3G06310.2
AT3G06310.3
AT3G06310.1
Cox19-like CHCH family protein
Chr1_+_3938422 0.14 AT1G11680.1
CYTOCHROME P450 51G1
Chr1_+_97412 0.13 AT1G01230.1
ORMDL family protein
Chr1_+_7640906 0.13 AT1G21740.1
DUF630 family protein, putative (DUF630 and DUF632)
Chr2_-_14122190 0.13 AT2G33320.1
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr5_-_20891007 0.13 AT5G51430.1
conserved oligomeric Golgi complex component-related / COG complex component-like protein
Chr5_+_16826542 0.13 AT5G42090.1
Lung seven transmembrane receptor family protein
Chr4_-_7470737 0.13 AT4G12650.1
Endomembrane protein 70 protein family
Chr1_+_24019490 0.13 AT1G64630.1
with no lysine (K) kinase 10
Chr3_-_18587352 0.12 AT3G50120.1
transmembrane protein, putative (DUF247)
Chr4_-_13398307 0.12 AT4G26540.1
Leucine-rich repeat receptor-like protein kinase family protein
Chr2_-_17090556 0.11 AT2G40950.1
Basic-leucine zipper (bZIP) transcription factor family protein
Chr3_+_22400395 0.11 AT3G60600.3
AT3G60600.2
vesicle associated protein
Chr5_+_21548397 0.11 AT5G53140.1
AT5G53140.2
Protein phosphatase 2C family protein
Chr4_-_12471261 0.11 AT4G24015.1
RING/U-box superfamily protein
Chr3_+_22400110 0.11 AT3G60600.1
vesicle associated protein
Chr1_-_25477545 0.11 AT1G67930.1
Golgi transport complex protein-like protein
Chr1_+_1236754 0.10 AT1G04540.1
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr5_+_24821203 0.10 AT5G61780.1
TUDOR-SN protein 2
Chr1_+_19987117 0.10 AT1G53570.6
AT1G53570.2
AT1G53570.1
AT1G53570.7
AT1G53570.5
AT1G53570.4
AT1G53570.3
mitogen-activated protein kinase kinase kinase 3
Chr3_-_5038114 0.10 AT3G14960.1
Galactosyltransferase family protein
Chr3_-_5475347 0.09 AT3G16160.1
Tesmin/TSO1-like CXC domain-containing protein
Chr1_+_6913001 0.09 AT1G19910.1
AT1G19910.2
ATPase, F0/V0 complex, subunit C protein
Chr5_-_5262840 0.09 AT5G16110.1
hypothetical protein
Chr1_+_27959527 0.08 AT1G74380.1
xyloglucan xylosyltransferase 5
Chr3_+_20964643 0.08 AT3G56590.2
AT3G56590.1
hydroxyproline-rich glycoprotein family protein
Chr1_+_20763844 0.08 AT1G55580.1
GRAS family transcription factor
Chr2_+_13141290 0.08 AT2G30870.1
glutathione S-transferase PHI 10
Chr5_+_6652306 0.08 AT5G19690.1
AT5G19690.2
staurosporin and temperature sensitive 3-like A
Chr1_+_13225168 0.08 AT1G35720.1
annexin 1
Chr1_-_4855287 0.08 AT1G14200.1
RING/U-box superfamily protein
Chr2_-_12861910 0.07 AT2G30120.2
AT2G30120.6
AT2G30120.5
AT2G30120.1
AT2G30120.3
AT2G30120.4
protein FLC EXPRESSOR
Chr3_+_22134951 0.07 AT3G59920.1
RAB GDP dissociation inhibitor 2
Chr2_-_16957183 0.07 AT2G40620.1
Basic-leucine zipper (bZIP) transcription factor family protein
Chr5_+_22392063 0.07 AT5G55190.1
RAN GTPase 3
Chr5_-_17856740 0.07 AT5G44320.1
Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
Chr5_-_22702200 0.07 AT5G56050.1
late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family protein
Chr4_+_9094402 0.06 AT4G16060.1
hypothetical protein
Chr1_+_12366810 0.06 AT1G34020.2
AT1G34020.1
AT1G34020.3
Nucleotide-sugar transporter family protein
Chr2_+_1515634 0.06 AT2G04350.1
AMP-dependent synthetase and ligase family protein
Chr1_+_8863768 0.06 AT1G25280.1
AT1G25280.3
AT1G25280.2
tubby like protein 10
Chr2_+_1515828 0.06 AT2G04350.2
AMP-dependent synthetase and ligase family protein
Chr1_+_24538886 0.05 AT1G65930.1
cytosolic NADP+-dependent isocitrate dehydrogenase
Chr1_+_19074328 0.05 AT1G51450.1
TRAUCO
Chr5_-_1326928 0.05 AT5G04610.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_-_138731 0.05 AT3G01360.1
AT3G01360.2
plant viral-response family protein (DUF716)
Chr1_+_22080689 0.04 AT1G59980.1
AT1G59980.2
AT1G59980.3
ARG1-like 2
Chr2_-_18588452 0.04 AT2G45070.3
AT2G45070.4
Preprotein translocase Sec, Sec61-beta subunit protein
Chr1_+_26216009 0.04 AT1G69690.1
TCP family transcription factor
Chr2_-_18588141 0.04 AT2G45070.2
AT2G45070.1
Preprotein translocase Sec, Sec61-beta subunit protein
Chr3_-_1071438 0.04 AT3G04080.1
apyrase 1
Chr2_-_4317862 0.04 AT2G10950.1
AT2G10950.2
AT2G10950.3
BSD domain-containing protein
Chr1_+_12072611 0.04 AT1G33280.1
NAC domain containing protein 15
Chr1_+_6971424 0.03 AT1G20110.1
RING/FYVE/PHD zinc finger superfamily protein
Chr5_+_20796950 0.03 AT5G51180.1
AT5G51180.2
alpha/beta-Hydrolases superfamily protein
Chr4_+_10311030 0.03 AT4G18770.1
myb domain protein 98
Chr5_+_7608242 0.03 AT5G22794.2
AT5G22794.1
hypothetical protein
Chr5_+_2455593 0.03 AT5G07720.1
Galactosyl transferase GMA12/MNN10 family protein
Chr5_-_10039286 0.03 AT5G28040.2
DNA-binding storekeeper protein-related transcriptional regulator
Chr5_-_5331694 0.02 AT5G16280.2
AT5G16280.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_-_14359901 0.02 AT2G33980.1
AT2G33980.4
AT2G33980.2
AT2G33980.3
nudix hydrolase homolog 22
Chr2_+_15158561 0.02 AT2G36090.1
F-box family protein
Chr2_+_14830626 0.01 AT2G35190.1
Putative plant snare 11
Chr5_-_26699426 0.01 AT5G66850.2
AT5G66850.1
mitogen-activated protein kinase kinase kinase 5
Chr5_-_10039001 0.01 AT5G28040.1
DNA-binding storekeeper protein-related transcriptional regulator
Chr3_+_21492145 0.00 AT3G58050.1
AT3G58050.2
hypothetical protein
Chr5_+_871204 0.00 AT5G03490.1
UDP-Glycosyltransferase superfamily protein
Chr4_+_12564945 0.00 AT4G24220.1
AT4G24220.2
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_-_24362054 0.00 AT1G65520.1
delta(3), delta(2)-enoyl CoA isomerase 1
Chr5_+_22799507 0.00 AT5G56300.1
gibberellic acid methyltransferase 2

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G36620

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:0033499 galactose catabolic process(GO:0019388) galactose catabolic process via UDP-galactose(GO:0033499)
0.2 0.8 GO:0030203 aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203)
0.1 0.3 GO:0010372 positive regulation of gibberellin biosynthetic process(GO:0010372)
0.1 0.3 GO:0071163 DNA replication preinitiation complex assembly(GO:0071163)
0.1 0.2 GO:0010289 homogalacturonan biosynthetic process(GO:0010289)
0.1 0.2 GO:0055047 generative cell mitosis(GO:0055047)
0.1 0.3 GO:0009800 cinnamic acid biosynthetic process(GO:0009800)
0.0 0.2 GO:0002184 cytoplasmic translational termination(GO:0002184)
0.0 0.5 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
0.0 0.1 GO:0034067 protein localization to Golgi apparatus(GO:0034067)
0.0 0.2 GO:0006107 oxaloacetate metabolic process(GO:0006107)
0.0 0.6 GO:0015865 purine nucleotide transport(GO:0015865)
0.0 0.2 GO:0010336 gibberellic acid homeostasis(GO:0010336)
0.0 0.1 GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response(GO:0006990) positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus(GO:1901522)
0.0 0.2 GO:0042547 cell wall modification involved in multidimensional cell growth(GO:0042547)
0.0 0.7 GO:0006879 cellular iron ion homeostasis(GO:0006879)
0.0 0.1 GO:0048358 mucilage pectin biosynthetic process(GO:0048358)
0.0 0.7 GO:0042026 protein refolding(GO:0042026)
0.0 0.2 GO:0090158 endoplasmic reticulum membrane organization(GO:0090158)
0.0 0.1 GO:0080182 simple leaf morphogenesis(GO:0060776) histone H3-K4 trimethylation(GO:0080182)
0.0 0.1 GO:0006120 mitochondrial electron transport, NADH to ubiquinone(GO:0006120)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0031205 endoplasmic reticulum Sec complex(GO:0031205)
0.0 0.2 GO:0018444 translation release factor complex(GO:0018444)
0.0 0.2 GO:0005853 eukaryotic translation elongation factor 1 complex(GO:0005853)
0.0 0.2 GO:0001673 male germ cell nucleus(GO:0001673)
0.0 0.1 GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220)
0.0 0.2 GO:0000322 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.0 0.2 GO:0005793 endoplasmic reticulum-Golgi intermediate compartment(GO:0005793)
0.0 0.1 GO:0017119 Golgi transport complex(GO:0017119)
0.0 0.2 GO:0005758 mitochondrial intermembrane space(GO:0005758)
0.0 0.1 GO:0048188 Set1C/COMPASS complex(GO:0048188)
0.0 0.3 GO:0010494 cytoplasmic stress granule(GO:0010494)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.9 GO:0004034 aldose 1-epimerase activity(GO:0004034)
0.2 0.8 GO:0003979 UDP-glucose 6-dehydrogenase activity(GO:0003979)
0.1 0.3 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.1 0.3 GO:0070182 DNA polymerase binding(GO:0070182)
0.1 0.6 GO:0005471 ATP:ADP antiporter activity(GO:0005471)
0.0 0.5 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.0 0.5 GO:0002020 protease binding(GO:0002020)
0.0 0.2 GO:0004614 phosphoglucomutase activity(GO:0004614)
0.0 0.2 GO:1990825 sequence-specific mRNA binding(GO:1990825)
0.0 0.7 GO:0005381 iron ion transmembrane transporter activity(GO:0005381)
0.0 0.2 GO:0008526 phosphatidylinositol transporter activity(GO:0008526)
0.0 0.1 GO:0033843 xyloglucan 6-xylosyltransferase activity(GO:0033843)
0.0 0.2 GO:0030060 L-malate dehydrogenase activity(GO:0030060)
0.0 0.1 GO:0005093 Rab GDP-dissociation inhibitor activity(GO:0005093)
0.0 0.1 GO:0004450 isocitrate dehydrogenase (NADP+) activity(GO:0004450)
0.0 0.4 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 0.1 GO:0042800 histone methyltransferase activity (H3-K4 specific)(GO:0042800)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 SIG CHEMOTAXIS Genes related to chemotaxis

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
0.0 0.1 REACTOME ASPARAGINE N LINKED GLYCOSYLATION Genes involved in Asparagine N-linked glycosylation