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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G36160
Z-value: 1.59
Transcription factors associated with AT4G36160
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G36160
|
AT4G36160 | NAC domain containing protein 76 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC076 | arTal_v1_Chr4_-_17112926_17112926 | -0.56 | 3.7e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_16441808_16441808 Show fit | 3.60 |
AT5G41080.2
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_16441655_16441655 Show fit | 3.55 |
AT5G41080.1
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 3.39 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 3.07 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 3.06 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15167859_15167864 Show fit | 2.97 |
AT5G38020.2
AT5G38020.1 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr1_+_29130375_29130375 Show fit | 2.87 |
AT1G77520.1
|
O-methyltransferase family protein |
|
| arTal_v1_Chr3_+_8703220_8703220 Show fit | 2.83 |
AT3G24100.1
|
Uncharacterized protein family SERF |
|
| arTal_v1_Chr1_-_7396773_7396823 Show fit | 2.77 |
AT1G21120.1
AT1G21120.2 |
O-methyltransferase family protein |
|
| arTal_v1_Chr1_-_3398358_3398358 Show fit | 2.58 |
AT1G10370.1
|
Glutathione S-transferase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G36160
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 15.0 | GO:0010200 | response to chitin(GO:0010200) |
| 0.4 | 7.1 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
| 1.8 | 7.0 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.1 | 6.8 | GO:0048024 | regulation of mRNA splicing, via spliceosome(GO:0048024) |
| 0.4 | 6.7 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.2 | 6.3 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 0.2 | 5.7 | GO:0045492 | xylan biosynthetic process(GO:0045492) |
| 0.1 | 5.2 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.9 | 5.1 | GO:0006567 | threonine catabolic process(GO:0006567) |
| 0.0 | 5.1 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 59.6 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 21.0 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 7.8 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 6.3 | GO:0044421 | extracellular space(GO:0005615) extracellular region part(GO:0044421) |
| 0.0 | 6.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.8 | 4.0 | GO:0035061 | interchromatin granule(GO:0035061) |
| 0.1 | 3.9 | GO:0090406 | pollen tube(GO:0090406) |
| 0.3 | 3.8 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.1 | 3.1 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 3.0 | GO:0005811 | lipid particle(GO:0005811) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 11.3 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 1.3 | 8.0 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.3 | 7.1 | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682) |
| 0.1 | 7.0 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.5 | 6.5 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.2 | 5.4 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 1.0 | 5.1 | GO:0004793 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
| 0.2 | 5.0 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.2 | 5.0 | GO:0005179 | hormone activity(GO:0005179) |
| 0.2 | 4.2 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 2.4 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.5 | 1.6 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.4 | 1.1 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.3 | 1.0 | PID MYC PATHWAY | C-MYC pathway |
| 0.3 | 0.8 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.4 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.1 | 0.4 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 0.3 | PID P73PATHWAY | p73 transcription factor network |
| 0.2 | 0.2 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.2 | 0.2 | PID EPHA2 FWD PATHWAY | EPHA2 forward signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.3 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.4 | 1.1 | REACTOME NOD1 2 SIGNALING PATHWAY | Genes involved in NOD1/2 Signaling Pathway |
| 0.1 | 1.1 | REACTOME NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Neurotransmitter Release Cycle |
| 0.2 | 1.0 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.3 | 0.8 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.1 | 0.8 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.0 | 0.7 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.1 | 0.4 | REACTOME SIGNALING BY TGF BETA RECEPTOR COMPLEX | Genes involved in Signaling by TGF-beta Receptor Complex |
| 0.2 | 0.2 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.1 | 0.2 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |