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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT4G34410

Z-value: 0.81

Transcription factors associated with AT4G34410

Gene Symbol Gene ID Gene Info
AT4G34410
AT4G34410 redox responsive transcription factor 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
RRTF1arTal_v1_Chr4_+_16451876_164518760.451.1e-01Click!

Activity profile of AT4G34410 motif

Sorted Z-values of AT4G34410 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_+_11150049 1.09 AT4G20820.1
AT4G20820
FAD-binding Berberine family protein
Chr3_-_18373147 0.94 AT3G49570.1
LSU3
response to low sulfur 3
Chr2_-_8850111 0.90 AT2G20560.1
AT2G20560
DNAJ heat shock family protein
Chr5_-_26519242 0.90 AT5G66400.2
RAB18
Dehydrin family protein
Chr1_+_28143851 0.85 AT1G74930.1
ORA47
Integrase-type DNA-binding superfamily protein
Chr1_-_7388512 0.84 AT1G21100.1
IGMT1
O-methyltransferase family protein
Chr2_-_17472984 0.83 AT2G41870.1
AT2G41870
Remorin family protein
Chr3_-_17441242 0.83 AT3G47340.3
AT3G47340.2
ASN1
glutamine-dependent asparagine synthase 1
Chr3_-_21008064 0.82 AT3G56710.1
AT3G56710.2
SIB1
sigma factor binding protein 1
Chr1_-_754262 0.82 AT1G03130.1
PSAD-2
photosystem I subunit D-2
Chr5_-_26519447 0.82 AT5G66400.1
RAB18
Dehydrin family protein
Chr3_-_17440176 0.80 AT3G47340.4
ASN1
glutamine-dependent asparagine synthase 1
Chr3_-_17441431 0.78 AT3G47340.1
ASN1
glutamine-dependent asparagine synthase 1
Chr2_+_17137829 0.76 AT2G41100.4
AT2G41100.7
TCH3
Calcium-binding EF hand family protein
Chr5_-_8181107 0.74 AT5G24155.2
AT5G24155.3
AT5G24155.1
AT5G24155
FAD/NAD(P)-binding oxidoreductase family protein
Chr2_+_17137427 0.74 AT2G41100.5
AT2G41100.6
TCH3
Calcium-binding EF hand family protein
Chr3_+_10538005 0.73 AT3G28270.2
AT3G28270.1
AT3G28270
transmembrane protein, putative (DUF677)
Chr1_-_23137254 0.73 AT1G62510.1
AT1G62510
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_24113109 0.73 AT1G64900.1
CYP89A2
cytochrome P450, family 89, subfamily A, polypeptide 2
Chr4_+_14026577 0.72 AT4G28350.1
AT4G28350
Concanavalin A-like lectin protein kinase family protein
Chr3_-_8268961 0.70 AT3G23170.1
AT3G23170
hypothetical protein
Chr5_-_8444101 0.69 AT5G24660.1
LSU2
response to low sulfur 2
Chr2_+_17138065 0.68 AT2G41100.1
TCH3
Calcium-binding EF hand family protein
Chr3_+_9758797 0.68 AT3G26580.1
AT3G26580
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_-_16950705 0.68 AT2G40610.1
EXPA8
expansin A8
Chr4_+_9759203 0.67 AT4G17500.1
ERF-1
ethylene responsive element binding factor 1
Chr4_-_5648727 0.67 AT4G08870.2
AT4G08870.1
ARGAH2
Arginase/deacetylase superfamily protein
Chr4_+_8010967 0.67 AT4G13830.2
AT4G13830.3
J20
DNAJ-like 20
Chr2_+_17138330 0.67 AT2G41100.2
TCH3
Calcium-binding EF hand family protein
Chr4_+_12686459 0.66 AT4G24570.1
DIC2
dicarboxylate carrier 2
Chr1_-_5727406 0.66 AT1G16730.1
UP6
hypothetical protein
Chr2_-_8533779 0.66 AT2G19800.1
MIOX2
myo-inositol oxygenase 2
Chr3_+_17051520 0.66 AT3G46370.1
AT3G46370.2
AT3G46370
Leucine-rich repeat protein kinase family protein
Chr1_-_6152222 0.65 AT1G17870.1
EGY3
ethylene-dependent gravitropism-deficient and yellow-green-like 3
Chr4_+_10481619 0.65 AT4G19170.1
NCED4
nine-cis-epoxycarotenoid dioxygenase 4
Chr1_-_2190784 0.65 AT1G07135.1
AT1G07135
glycine-rich protein
Chr1_-_11801407 0.64 AT1G32640.1
MYC2
Basic helix-loop-helix (bHLH) DNA-binding family protein
Chr1_+_3066674 0.64 AT1G09500.1
AT1G09500.2
AT1G09500.3
AT1G09500
NAD(P)-binding Rossmann-fold superfamily protein
Chr4_+_8011183 0.63 AT4G13830.1
J20
DNAJ-like 20
Chr5_+_23187840 0.63 AT5G57220.1
CYP81F2
cytochrome P450, family 81, subfamily F, polypeptide 2
Chr2_+_17137037 0.63 AT2G41100.3
TCH3
Calcium-binding EF hand family protein
Chr3_-_2699420 0.62 AT3G08860.1
PYD4
PYRIMIDINE 4
Chr4_+_17554493 0.62 AT4G37300.1
MEE59
maternal effect embryo arrest 59
Chr3_-_2699257 0.62 AT3G08860.2
PYD4
PYRIMIDINE 4
Chr1_+_11928757 0.61 AT1G32920.1
AT1G32920
hypothetical protein
Chr5_-_24767732 0.60 AT5G61600.1
ERF104
ethylene response factor 104
Chr2_+_9006610 0.58 AT2G20960.3
AT2G20960.2
AT2G20960.1
AT2G20960.4
pEARLI4
phospholipase-like protein (PEARLI 4) family protein
Chr1_-_4066344 0.58 AT1G12030.1
AT1G12030
phosphoenolpyruvate carboxylase, putative (DUF506)
Chr5_-_22030060 0.57 AT5G54250.2
AT5G54250.1
AT5G54250.4
AT5G54250.3
CNGC4
cyclic nucleotide-gated cation channel 4
Chr5_-_16974877 0.57 AT5G42440.1
AT5G42440
Protein kinase superfamily protein
Chr2_+_13647699 0.57 AT2G32100.1
OFP16
ovate family protein 16
Chr4_-_12393982 0.56 AT4G23810.1
WRKY53
WRKY family transcription factor
Chr1_-_18430497 0.56 AT1G49780.1
PUB26
plant U-box 26
Chr2_-_15870071 0.56 AT2G37920.1
emb1513
copper ion transmembrane transporter
Chr3_+_16569051 0.56 AT3G45230.1
AT3G45230
hydroxyproline-rich glycoprotein family protein
Chr3_-_826585 0.56 AT3G03470.1
CYP89A9
cytochrome P450, family 87, subfamily A, polypeptide 9
Chr5_-_8707885 0.56 AT5G25190.1
ESE3
Integrase-type DNA-binding superfamily protein
Chr1_+_28070295 0.56 AT1G74710.1
AT1G74710.2
EDS16
ADC synthase superfamily protein
Chr1_-_9956960 0.56 AT1G28370.1
AT1G28370.2
ERF11
ERF domain protein 11
Chr3_-_20910623 0.55 AT3G56400.1
WRKY70
WRKY DNA-binding protein 70
Chr2_+_17886101 0.55 AT2G43010.1
AT2G43010.3
AT2G43010.4
PIF4
phytochrome interacting factor 4
Chr5_-_16195751 0.55 AT5G40450.2
AT5G40450.1
AT5G40450
A-kinase anchor-like protein
Chr3_-_18649521 0.55 AT3G50310.1
MAPKKK20
mitogen-activated protein kinase kinase kinase 20
Chr1_+_1882907 0.54 AT1G06160.1
ORA59
octadecanoid-responsive AP2/ERF 59
Chr1_-_8399836 0.54 AT1G23740.1
AOR
Oxidoreductase, zinc-binding dehydrogenase family protein
Chr2_-_13120199 0.54 AT2G30790.1
PSBP-2
photosystem II subunit P-2
Chr1_+_29502506 0.52 AT1G78410.1
AT1G78410.2
AT1G78410
VQ motif-containing protein
Chr3_-_18863397 0.52 AT3G50750.1
BEH1
BES1/BZR1 homolog 1
Chr1_+_5977323 0.52 AT1G17420.1
LOX3
lipoxygenase 3
Chr4_-_7026224 0.52 AT4G11650.1
OSM34
osmotin 34
Chr3_-_6172005 0.52 AT3G18035.1
AT3G18035.2
HON4
winged-helix DNA-binding transcription factor family protein
Chr1_-_10326848 0.52 AT1G29530.1
AT1G29530
hypothetical protein
Chr3_-_3282131 0.52 AT3G10525.1
LGO
LOSS OF GIANT CELLS FROM ORGANS
Chr1_+_27190036 0.51 AT1G72240.1
AT1G72240
hypothetical protein
Chr1_-_19690589 0.51 AT1G52880.1
NAM
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Chr1_-_12054753 0.51 AT1G33240.1
AT1G33240.3
GTL1
GT-2-like 1
Chr3_+_5341356 0.51 AT3G15780.1
AT3G15780
transmembrane protein
Chr1_-_12053935 0.51 AT1G33240.2
GTL1
GT-2-like 1
Chr4_-_12167026 0.50 AT4G23250.2
AT4G23250.3
AT4G23250.1
EMB1290
cysteine-rich receptor-like protein kinase 17
Chr5_-_8160343 0.50 AT5G24120.2
AT5G24120.1
SIGE
sigma factor E
Chr5_-_8160163 0.49 AT5G24120.3
SIGE
sigma factor E
Chr1_-_2077767 0.49 AT1G06760.1
AT1G06760
winged-helix DNA-binding transcription factor family protein
Chr3_+_7906521 0.49 AT3G22370.1
AOX1A
alternative oxidase 1A
Chr1_+_27110832 0.49 AT1G72030.1
AT1G72030
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Chr1_+_5525293 0.49 AT1G16130.1
WAKL2
wall associated kinase-like 2
Chr4_+_8218261 0.49 AT4G14270.2
AT4G14270
polyadenylate-binding protein interacting protein
Chr5_-_22055443 0.48 AT5G54300.1
AT5G54300
cotton fiber-like protein (DUF761)
Chr5_-_213472 0.48 AT5G01540.1
LECRKA4.1
lectin receptor kinase a4.1
Chr1_-_7105869 0.48 AT1G20510.2
AT1G20510.3
AT1G20510.1
OPCL1
OPC-8:0 CoA ligase1
Chr3_+_22902491 0.48 AT3G61870.1
AT3G61870.2
AT3G61870
plant/protein
Chr4_+_8218083 0.48 AT4G14270.1
AT4G14270
polyadenylate-binding protein interacting protein
Chr3_+_6180621 0.48 AT3G18050.1
AT3G18050
GPI-anchored protein
Chr5_-_8643516 0.47 AT5G25070.1
AT5G25070
neurofilament light protein
Chr2_+_17886798 0.47 AT2G43010.5
PIF4
phytochrome interacting factor 4
Chr1_-_7531108 0.47 AT1G21500.1
AT1G21500
hypothetical protein
Chr2_+_1679307 0.47 AT2G04790.10
AT2G04790.6
AT2G04790.5
AT2G04790.7
AT2G04790.9
AT2G04790.8
AT2G04790.13
AT2G04790.12
AT2G04790.11
AT2G04790.14
AT2G04790.15
AT2G04790.16
AT2G04790.4
AT2G04790.3
AT2G04790.1
AT2G04790.2
AT2G04790
PTB domain engulfment adapter
Chr5_-_2845530 0.47 AT5G08720.1
AT5G08720
polyketide cyclase/dehydrase/lipid transporter
Chr4_+_9171280 0.47 AT4G16190.1
AT4G16190
Papain family cysteine protease
Chr2_+_9924886 0.47 AT2G23320.1
AT2G23320.2
WRKY15
WRKY DNA-binding protein 15
Chr5_+_26131283 0.47 AT5G65400.2
AT5G65400.1
AT5G65400
alpha/beta-Hydrolases superfamily protein
Chr2_-_16603059 0.46 AT2G39800.2
AT2G39800.4
AT2G39800.3
P5CS1
delta1-pyrroline-5-carboxylate synthase 1
Chr5_+_6833564 0.46 AT5G20250.2
AT5G20250.1
AT5G20250.4
AT5G20250.3
DIN10
Raffinose synthase family protein
Chr5_+_23734273 0.46 AT5G58770.1
cPT4
Undecaprenyl pyrophosphate synthetase family protein
Chr2_-_14211693 0.46 AT2G33550.1
AT2G33550
Homeodomain-like superfamily protein
Chr5_+_15616770 0.45 AT5G39020.1
AT5G39020
Malectin/receptor-like protein kinase family protein
Chr2_+_17886427 0.45 AT2G43010.2
PIF4
phytochrome interacting factor 4
Chr4_+_2505979 0.45 AT4G04925.1
AT4G04925
transmembrane protein
Chr2_-_9906032 0.45 AT2G23290.1
MYB70
myb domain protein 70
Chr1_-_30018231 0.45 AT1G79790.1
AT1G79790.4
AT1G79790.2
FHY1
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_-_18690503 0.44 AT1G50450.1
AT1G50450
Saccharopine dehydrogenase
Chr5_-_26850040 0.44 AT5G67290.1
AT5G67290
FAD-dependent oxidoreductase family protein
Chr3_-_5358427 0.44 AT3G15840.4
AT3G15840.2
AT3G15840.3
AT3G15840.5
AT3G15840.1
PIFI
post-illumination chlorophyll fluorescence increase
Chr3_+_22142856 0.44 AT3G59940.1
AT3G59940
Galactose oxidase/kelch repeat superfamily protein
Chr2_-_16603319 0.44 AT2G39800.1
P5CS1
delta1-pyrroline-5-carboxylate synthase 1
Chr5_+_526433 0.44 AT5G02430.1
AT5G02430
Transducin/WD40 repeat-like superfamily protein
Chr3_+_5342712 0.44 AT3G15790.1
AT3G15790.2
MBD11
methyl-CPG-binding domain 11
Chr4_-_1230164 0.43 AT4G02770.1
PSAD-1
photosystem I subunit D-1
Chr1_+_1018058 0.43 AT1G03970.1
GBF4
G-box binding factor 4
Chr1_+_557092 0.43 AT1G02620.1
AT1G02620
Ras-related small GTP-binding family protein
Chr1_+_26654768 0.43 AT1G70700.3
AT1G70700.2
TIFY7
TIFY domain/Divergent CCT motif family protein
Chr5_-_14123362 0.43 AT5G35970.1
AT5G35970
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_-_8992756 0.42 AT4G15810.1
AT4G15810
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_-_20146690 0.42 AT5G49630.1
AAP6
amino acid permease 6
Chr2_+_10629662 0.42 AT2G25000.1
AT2G25000.2
AT2G25000.3
AT2G25000.4
WRKY60
WRKY DNA-binding protein 60
Chr2_+_6797111 0.41 AT2G15580.3
AT2G15580.1
AT2G15580
RING/U-box superfamily protein
Chr5_-_19542760 0.41 AT5G48180.1
NSP5
nitrile specifier protein 5
Chr3_-_10368944 0.41 AT3G27925.2
AT3G27925.1
DEG1
DegP protease 1
Chr5_-_10295283 0.41 AT5G28300.1
AT5G28300
Duplicated homeodomain-like superfamily protein
Chr3_-_6617951 0.41 AT3G19150.3
AT3G19150.1
KRP6
KIP-related protein 6
Chr3_-_19592768 0.41 AT3G52860.1
AT3G52860
mediator of RNA polymerase II transcription subunit-like protein
Chr1_+_16133286 0.40 AT1G42980.1
AT1G42980
Actin-binding FH2 (formin homology 2) family protein
Chr3_-_20718866 0.40 AT3G55840.1
AT3G55840
Hs1pro-1 protein
Chr1_-_28978750 0.40 AT1G77122.1
AT1G77122
Uncharacterized protein family UPF0090
Chr5_-_16570275 0.40 AT5G41400.1
AT5G41400
RING/U-box superfamily protein
Chr5_+_4658441 0.40 AT5G14450.1
AT5G14450
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr5_+_3509833 0.40 AT5G11060.1
KNAT4
homeobox protein knotted-1-like 4
Chr3_-_639178 0.40 AT3G02885.1
AT3G02885.2
GASA5
GAST1 protein homolog 5
Chr1_+_852151 0.40 AT1G03440.1
AT1G03440
Leucine-rich repeat (LRR) family protein
Chr2_+_19472573 0.39 AT2G47450.1
CAO
chloroplast signal recognition particle component (CAO)
Chr5_-_22194559 0.39 AT5G54630.1
AT5G54630
zinc finger protein-like protein
Chr1_+_6945695 0.39 AT1G20030.1
AT1G20030
Pathogenesis-related thaumatin superfamily protein
Chr3_-_6855513 0.39 AT3G19720.3
AT3G19720.2
AT3G19720.1
ARC5
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_+_7042354 0.39 AT4G11660.1
AT-HSFB2B
winged-helix DNA-binding transcription factor family protein
Chr1_-_10806317 0.39 AT1G30500.1
AT1G30500.2
NF-YA7
nuclear factor Y, subunit A7
Chr1_+_24229063 0.39 AT1G65230.1
AT1G65230
transmembrane protein, putative (DUF2358)
Chr1_+_26654529 0.39 AT1G70700.1
TIFY7
TIFY domain/Divergent CCT motif family protein
Chr4_-_9754161 0.39 AT4G17490.1
ERF6
ethylene responsive element binding factor 6
Chr1_+_4839801 0.39 AT1G14150.1
AT1G14150.2
PnsL2
PsbQ-like 2
Chr3_-_22244061 0.38 AT3G60180.2
AT3G60180.1
AT3G60180
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_+_3069090 0.38 AT3G09980.1
AT3G09980
ankyrin repeat 30A-like protein (DUF662)
Chr1_-_2013459 0.38 AT1G06570.1
AT1G06570.2
PDS1
4-hydroxyphenylpyruvate dioxygenase
Chr3_-_21303230 0.38 AT3G57540.1
AT3G57540
Remorin family protein
Chr1_+_278600 0.38 AT1G01770.1
AT1G01770
propionyl-CoA carboxylase
Chr1_+_26931852 0.38 AT1G71480.2
AT1G71480.1
AT1G71480.3
AT1G71480
Nuclear transport factor 2 (NTF2) family protein
Chr1_-_24967574 0.38 AT1G66920.1
AT1G66920.2
AT1G66920.3
AT1G66920
Protein kinase superfamily protein
Chr1_+_6945425 0.38 AT1G20030.2
AT1G20030
Pathogenesis-related thaumatin superfamily protein
Chr4_-_11767422 0.38 AT4G22240.1
AT4G22240
Plastid-lipid associated protein PAP / fibrillin family protein
Chr5_+_21505074 0.38 AT5G53030.1
AT5G53030.2
AT5G53030
hypothetical protein
Chr5_-_4279493 0.38 AT5G13340.1
AT5G13340
arginine/glutamate-rich 1 protein
Chr1_-_23801720 0.38 AT1G64110.1
AT1G64110.3
AT1G64110.2
DAA1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_-_8165214 0.38 AT4G14150.1
PAKRP1
phragmoplast-associated kinesin-related protein 1
Chr2_-_8706900 0.38 AT2G20180.5
AT2G20180.4
AT2G20180.8
AT2G20180.2
AT2G20180.1
AT2G20180.7
AT2G20180.6
AT2G20180.3
PIL5
phytochrome interacting factor 3-like 5
Chr3_-_3738208 0.38 AT3G11840.1
PUB24
E3 ubiquitin-protein ligase PUB24-like protein
Chr5_-_8856758 0.38 AT5G25440.1
AT5G25440.2
AT5G25440
Protein kinase superfamily protein
Chr1_+_5489145 0.38 AT1G15980.1
PnsB1
NDH-dependent cyclic electron flow 1
Chr1_+_28746833 0.37 AT1G76600.1
AT1G76600
poly polymerase
Chr1_+_4159227 0.37 AT1G12250.1
AT1G12250.3
AT1G12250.2
AT1G12250
Pentapeptide repeat-containing protein
Chr1_+_22836327 0.37 AT1G61820.3
BGLU46
beta glucosidase 46
Chr1_+_22835078 0.37 AT1G61820.1
BGLU46
beta glucosidase 46
Chr4_-_10007443 0.37 AT4G18020.10
AT4G18020.11
AT4G18020.3
AT4G18020.4
AT4G18020.2
AT4G18020.7
AT4G18020.1
AT4G18020.5
AT4G18020.8
AT4G18020.6
APRR2
CheY-like two-component responsive regulator family protein
Chr3_+_16383595 0.37 AT3G44880.1
ACD1
Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein
Chr5_-_3024756 0.37 AT5G09740.2
AT5G09740.1
HAM2
histone acetyltransferase of the MYST family 2
Chr4_+_446978 0.37 AT4G01026.1
PYL7
PYR1-like 7
Chr3_-_6676520 0.37 AT3G19270.1
AT3G19270.2
CYP707A4
cytochrome P450, family 707, subfamily A, polypeptide 4
Chr2_+_6797335 0.37 AT2G15580.2
AT2G15580
RING/U-box superfamily protein
Chr3_+_2126312 0.37 AT3G06740.1
GATA15
GATA transcription factor 15
Chr5_-_4633925 0.37 AT5G14370.1
AT5G14370
CCT motif family protein
Chr1_-_7652288 0.36 AT1G21770.1
AT1G21770
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Chr1_+_24637196 0.36 AT1G66160.2
AT1G66160.1
CMPG1
CYS, MET, PRO, and GLY protein 1
Chr1_-_23458928 0.36 AT1G63240.1
AT1G63240
hypothetical protein
Chr4_-_5640636 0.36 AT4G08850.2
AT4G08850
Leucine-rich repeat receptor-like protein kinase family protein
Chr3_-_22907958 0.36 AT3G61880.1
AT3G61880.2
CYP78A9
cytochrome p450 78a9
Chr5_+_14968758 0.36 AT5G37670.1
AT5G37670
HSP20-like chaperones superfamily protein
Chr1_-_25445357 0.36 AT1G67860.1
AT1G67860
transmembrane protein
Chr2_-_9963628 0.36 AT2G23390.2
AT2G23390.1
AT2G23390
acyl-CoA
Chr5_-_24975632 0.36 AT5G62170.1
AT5G62170.2
AT5G62170.4
AT5G62170.3
TRM25
LOW protein: M-phase inducer phosphatase-like protein
Chr5_+_23167774 0.36 AT5G57180.1
AT5G57180.2
AT5G57180.4
AT5G57180.3
CIA2
chloroplast import apparatus 2
Chr3_-_1457150 0.35 AT3G05160.2
AT3G05160.1
AT3G05160.3
AT3G05160
Major facilitator superfamily protein
Chr5_-_20307943 0.35 AT5G49920.1
AT5G49920
Octicosapeptide/Phox/Bem1p family protein
Chr5_-_17144672 0.35 AT5G42750.1
BKI1
BRI1 kinase inhibitor 1
Chr1_-_2282828 0.35 AT1G07430.1
HAI2
highly ABA-induced PP2C protein 2
Chr5_+_24612867 0.35 AT5G61180.1
AT5G61180
Putative endonuclease or glycosyl hydrolase
Chr5_+_8541558 0.35 AT5G24860.2
FPF1
flowering promoting factor 1
Chr3_+_5342987 0.35 AT3G15790.3
MBD11
methyl-CPG-binding domain 11
Chr5_-_19172956 0.35 AT5G47220.1
ERF2
ethylene responsive element binding factor 2
Chr2_+_10379948 0.35 AT2G24420.1
AT2G24420.2
AT2G24420
DNA repair ATPase-like protein
Chr1_-_27646743 0.35 AT1G73540.1
NUDT21
nudix hydrolase homolog 21
Chr4_-_5932475 0.35 AT4G09350.1
NdhT
Chaperone DnaJ-domain superfamily protein
Chr5_-_8916856 0.35 AT5G25610.1
RD22
BURP domain-containing protein
Chr3_+_9306776 0.35 AT3G25600.1
AT3G25600
Calcium-binding EF-hand family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G34410

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 2.4 GO:0043617 cellular response to sucrose starvation(GO:0043617) L-asparagine biosynthetic process(GO:0070981) L-asparagine metabolic process(GO:0070982)
0.3 3.5 GO:0009652 thigmotropism(GO:0009652)
0.3 1.3 GO:0010322 regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0010322)
0.2 0.7 GO:0000050 urea cycle(GO:0000050)
0.2 1.1 GO:0051289 protein homotetramerization(GO:0051289)
0.2 0.6 GO:0015709 thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422)
0.2 1.7 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid(GO:0009961)
0.2 0.5 GO:0090392 sepal giant cell differentiation(GO:0090392)
0.2 0.5 GO:0046156 siroheme biosynthetic process(GO:0019354) siroheme metabolic process(GO:0046156)
0.2 0.8 GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091)
0.2 1.0 GO:0009138 nucleoside diphosphate biosynthetic process(GO:0009133) pyrimidine nucleoside diphosphate metabolic process(GO:0009138) pyrimidine nucleoside diphosphate biosynthetic process(GO:0009139)
0.2 0.8 GO:0006307 DNA dealkylation involved in DNA repair(GO:0006307)
0.1 0.9 GO:0055129 L-proline biosynthetic process(GO:0055129)
0.1 0.3 GO:0042549 photosystem II stabilization(GO:0042549)
0.1 0.5 GO:0097298 regulation of nucleus size(GO:0097298)
0.1 1.1 GO:0031936 negative regulation of chromatin silencing(GO:0031936)
0.1 0.7 GO:0019310 inositol catabolic process(GO:0019310)
0.1 0.6 GO:0032410 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.1 0.4 GO:0043290 sesquiterpenoid catabolic process(GO:0016107) apocarotenoid catabolic process(GO:0043290) abscisic acid catabolic process(GO:0046345)
0.1 1.7 GO:0010244 response to low fluence blue light stimulus by blue low-fluence system(GO:0010244)
0.1 0.8 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.1 0.7 GO:0010438 cellular response to sulfur starvation(GO:0010438)
0.1 0.6 GO:0010226 response to lithium ion(GO:0010226)
0.1 0.2 GO:1901333 positive regulation of lateral root development(GO:1901333)
0.1 1.1 GO:2000037 regulation of stomatal complex patterning(GO:2000037)
0.1 0.7 GO:0045038 protein import into chloroplast thylakoid membrane(GO:0045038)
0.1 0.6 GO:0009759 indole glucosinolate biosynthetic process(GO:0009759)
0.1 0.3 GO:0060776 simple leaf morphogenesis(GO:0060776)
0.1 2.3 GO:0010207 photosystem II assembly(GO:0010207)
0.1 0.9 GO:0016123 xanthophyll biosynthetic process(GO:0016123)
0.1 0.6 GO:0071169 establishment of mitotic sister chromatid cohesion(GO:0034087) establishment of protein localization to chromosome(GO:0070199) rDNA condensation(GO:0070550) establishment of protein localization to chromatin(GO:0071169) transcriptional activation by promoter-enhancer looping(GO:0071733) gene looping(GO:0090202) dsDNA loop formation(GO:0090579)
0.1 0.9 GO:0010189 vitamin E biosynthetic process(GO:0010189) vitamin E metabolic process(GO:0042360)
0.1 0.6 GO:0080187 floral organ senescence(GO:0080187)
0.1 0.8 GO:0010188 response to microbial phytotoxin(GO:0010188)
0.1 0.4 GO:0097438 release of seed from dormancy(GO:0048838) exit from dormancy(GO:0097438) negative regulation of seed maturation(GO:2000692)
0.1 0.8 GO:0048363 mucilage pectin metabolic process(GO:0048363)
0.1 0.3 GO:2000029 regulation of proanthocyanidin biosynthetic process(GO:2000029)
0.1 1.2 GO:0001676 long-chain fatty acid metabolic process(GO:0001676)
0.1 0.4 GO:0010452 histone H3-K36 methylation(GO:0010452)
0.1 0.4 GO:0046218 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.1 0.3 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.1 0.5 GO:0019408 dolichol biosynthetic process(GO:0019408)
0.1 0.4 GO:0080175 assembly of actomyosin apparatus involved in cytokinesis(GO:0000912) phragmoplast assembly(GO:0000914) phragmoplast microtubule organization(GO:0080175) assembly of actomyosin apparatus involved in mitotic cytokinesis(GO:1902407)
0.1 0.1 GO:0043953 protein transport by the Tat complex(GO:0043953)
0.1 0.3 GO:0070206 protein trimerization(GO:0070206)
0.1 0.4 GO:0009590 detection of gravity(GO:0009590)
0.1 0.3 GO:0008615 pyridoxine biosynthetic process(GO:0008615)
0.1 0.3 GO:0010500 transmitting tissue development(GO:0010500)
0.1 0.3 GO:1901271 lipid A biosynthetic process(GO:0009245) lipid A metabolic process(GO:0046493) lipooligosaccharide metabolic process(GO:1901269) lipooligosaccharide biosynthetic process(GO:1901271)
0.1 0.3 GO:0007187 G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger(GO:0007187) adenylate cyclase-modulating G-protein coupled receptor signaling pathway(GO:0007188)
0.1 0.6 GO:0010230 alternative respiration(GO:0010230)
0.1 0.2 GO:1900378 positive regulation of secondary metabolite biosynthetic process(GO:1900378)
0.1 0.5 GO:0080143 amine transport(GO:0015837) regulation of organic acid transport(GO:0032890) regulation of amine transport(GO:0051952) regulation of amino acid transport(GO:0051955) regulation of amino acid export(GO:0080143)
0.1 0.2 GO:0006285 base-excision repair, AP site formation(GO:0006285)
0.1 0.7 GO:0042374 phylloquinone biosynthetic process(GO:0042372) phylloquinone metabolic process(GO:0042374)
0.1 0.6 GO:1904030 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.1 0.3 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.1 0.3 GO:0051180 vitamin transport(GO:0051180)
0.1 1.6 GO:0009695 jasmonic acid biosynthetic process(GO:0009695)
0.1 2.4 GO:2000022 regulation of jasmonic acid mediated signaling pathway(GO:2000022)
0.1 0.3 GO:0071323 cellular response to chitin(GO:0071323)
0.1 0.4 GO:0070370 cellular heat acclimation(GO:0070370)
0.1 0.2 GO:0090615 mitochondrial mRNA processing(GO:0090615)
0.1 0.5 GO:0046294 formaldehyde catabolic process(GO:0046294)
0.1 0.4 GO:0051055 negative regulation of lipid biosynthetic process(GO:0051055)
0.1 0.4 GO:0016103 diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487)
0.0 0.6 GO:0016559 peroxisome fission(GO:0016559)
0.0 0.6 GO:0048317 seed morphogenesis(GO:0048317)
0.0 0.2 GO:0019419 sulfate reduction(GO:0019419)
0.0 0.5 GO:0080028 nitrile metabolic process(GO:0050898) nitrile biosynthetic process(GO:0080028)
0.0 0.2 GO:0046416 D-amino acid metabolic process(GO:0046416)
0.0 0.4 GO:0043266 regulation of potassium ion transport(GO:0043266)
0.0 0.2 GO:0031468 nuclear envelope reassembly(GO:0031468)
0.0 0.3 GO:0019464 glycine decarboxylation via glycine cleavage system(GO:0019464)
0.0 1.1 GO:0098869 cellular oxidant detoxification(GO:0098869)
0.0 0.4 GO:0051513 regulation of monopolar cell growth(GO:0051513)
0.0 0.2 GO:0048281 inflorescence morphogenesis(GO:0048281)
0.0 0.1 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.0 0.2 GO:0001113 DNA-templated transcriptional open complex formation(GO:0001112) transcriptional open complex formation at RNA polymerase II promoter(GO:0001113) protein-DNA complex remodeling(GO:0001120) macromolecular complex remodeling(GO:0034367)
0.0 0.1 GO:0046506 sulfolipid metabolic process(GO:0046505) sulfolipid biosynthetic process(GO:0046506)
0.0 0.4 GO:0042659 regulation of cell fate specification(GO:0042659)
0.0 0.3 GO:0015855 pyrimidine nucleobase transport(GO:0015855) uracil transport(GO:0015857)
0.0 0.7 GO:1901401 regulation of tetrapyrrole metabolic process(GO:1901401)
0.0 0.1 GO:2000693 positive regulation of seed maturation(GO:2000693)
0.0 0.7 GO:0015996 chlorophyll catabolic process(GO:0015996)
0.0 0.2 GO:0031929 TOR signaling(GO:0031929)
0.0 0.8 GO:0009773 photosynthetic electron transport in photosystem I(GO:0009773)
0.0 0.9 GO:0006817 phosphate ion transport(GO:0006817)
0.0 0.2 GO:0032988 ribonucleoprotein complex disassembly(GO:0032988)
0.0 0.2 GO:0035627 ceramide transport(GO:0035627)
0.0 0.2 GO:1901535 regulation of DNA demethylation(GO:1901535)
0.0 0.2 GO:0006808 regulation of nitrogen utilization(GO:0006808) gibberellic acid homeostasis(GO:0010336)
0.0 0.2 GO:0016139 glycoside catabolic process(GO:0016139)
0.0 4.8 GO:0010200 response to chitin(GO:0010200)
0.0 0.1 GO:0006432 phenylalanyl-tRNA aminoacylation(GO:0006432)
0.0 0.4 GO:0072583 clathrin-mediated endocytosis(GO:0072583)
0.0 0.3 GO:0048579 negative regulation of long-day photoperiodism, flowering(GO:0048579)
0.0 0.3 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.0 0.2 GO:2000757 negative regulation of histone acetylation(GO:0035067) negative regulation of protein acetylation(GO:1901984) negative regulation of peptidyl-lysine acetylation(GO:2000757)
0.0 0.2 GO:2001295 malonyl-CoA biosynthetic process(GO:2001295)
0.0 0.1 GO:0046203 spermidine catabolic process(GO:0046203)
0.0 0.2 GO:0009228 thiamine biosynthetic process(GO:0009228) thiamine-containing compound biosynthetic process(GO:0042724)
0.0 0.2 GO:0015919 peroxisomal membrane transport(GO:0015919)
0.0 0.1 GO:1900151 regulation of nuclear-transcribed mRNA poly(A) tail shortening(GO:0060211) regulation of mRNA catabolic process(GO:0061013) regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay(GO:1900151)
0.0 0.3 GO:0009061 anaerobic respiration(GO:0009061)
0.0 0.2 GO:0030322 stabilization of membrane potential(GO:0030322)
0.0 1.4 GO:0043562 cellular response to nitrogen levels(GO:0043562)
0.0 0.3 GO:0010239 chloroplast mRNA processing(GO:0010239)
0.0 0.4 GO:0007584 response to nutrient(GO:0007584)
0.0 0.1 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.0 0.2 GO:1990481 mRNA pseudouridine synthesis(GO:1990481)
0.0 0.2 GO:0045910 negative regulation of DNA recombination(GO:0045910)
0.0 0.3 GO:0018107 peptidyl-threonine phosphorylation(GO:0018107) peptidyl-threonine modification(GO:0018210)
0.0 0.2 GO:0035434 copper ion transmembrane transport(GO:0035434)
0.0 0.2 GO:0015939 pantothenate metabolic process(GO:0015939) pantothenate biosynthetic process(GO:0015940)
0.0 0.5 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.0 0.2 GO:0009972 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.0 0.1 GO:0010269 response to selenium ion(GO:0010269)
0.0 0.2 GO:0006560 proline metabolic process(GO:0006560)
0.0 0.1 GO:0009720 detection of hormone stimulus(GO:0009720) detection of endogenous stimulus(GO:0009726)
0.0 0.1 GO:0009143 nucleoside triphosphate catabolic process(GO:0009143)
0.0 0.3 GO:0043486 histone exchange(GO:0043486)
0.0 0.5 GO:0035304 regulation of protein dephosphorylation(GO:0035304)
0.0 0.3 GO:0015749 monosaccharide transport(GO:0015749)
0.0 0.1 GO:0010495 long-distance posttranscriptional gene silencing(GO:0010495)
0.0 0.5 GO:0010082 regulation of root meristem growth(GO:0010082)
0.0 0.3 GO:0016558 protein import into peroxisome matrix(GO:0016558)
0.0 0.1 GO:0015812 gamma-aminobutyric acid transport(GO:0015812)
0.0 0.5 GO:0009861 jasmonic acid and ethylene-dependent systemic resistance(GO:0009861)
0.0 0.1 GO:0006567 threonine catabolic process(GO:0006567)
0.0 0.0 GO:0032491 detection of molecule of fungal origin(GO:0032491)
0.0 0.2 GO:0097437 maintenance of seed dormancy(GO:0010231) maintenance of dormancy(GO:0097437)
0.0 1.1 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.0 0.2 GO:0022610 cell adhesion(GO:0007155) biological adhesion(GO:0022610)
0.0 0.1 GO:0010601 positive regulation of auxin biosynthetic process(GO:0010601)
0.0 0.3 GO:0006465 signal peptide processing(GO:0006465)
0.0 0.1 GO:0080088 spermidine hydroxycinnamate conjugate biosynthetic process(GO:0080088)
0.0 0.2 GO:0071588 hydrogen peroxide mediated signaling pathway(GO:0071588)
0.0 0.2 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.0 0.9 GO:0009816 defense response to bacterium, incompatible interaction(GO:0009816)
0.0 0.1 GO:0090646 mitochondrial tRNA processing(GO:0090646)
0.0 0.4 GO:0007031 peroxisome organization(GO:0007031)
0.0 0.9 GO:0009911 positive regulation of flower development(GO:0009911)
0.0 0.1 GO:0032979 protein insertion into membrane from inner side(GO:0032978) protein insertion into mitochondrial membrane from inner side(GO:0032979) protein insertion into mitochondrial membrane(GO:0051204)
0.0 0.1 GO:0051096 regulation of helicase activity(GO:0051095) positive regulation of helicase activity(GO:0051096)
0.0 0.1 GO:0051098 regulation of binding(GO:0051098)
0.0 0.2 GO:0042138 meiotic DNA double-strand break formation(GO:0042138)
0.0 0.8 GO:0072596 protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596)
0.0 0.1 GO:0050792 regulation of viral process(GO:0050792)
0.0 0.7 GO:0007166 cell surface receptor signaling pathway(GO:0007166)
0.0 0.3 GO:1900865 chloroplast RNA modification(GO:1900865)
0.0 1.7 GO:0010087 phloem or xylem histogenesis(GO:0010087)
0.0 0.1 GO:0006825 copper ion transport(GO:0006825)
0.0 0.1 GO:1902584 positive regulation of response to water deprivation(GO:1902584)
0.0 0.3 GO:2000122 negative regulation of stomatal complex development(GO:2000122)
0.0 0.3 GO:0009306 protein secretion(GO:0009306)
0.0 0.1 GO:0007000 nucleolus organization(GO:0007000)
0.0 0.2 GO:0080027 response to herbivore(GO:0080027)
0.0 0.1 GO:0051455 attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation(GO:0051316) attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation(GO:0051455) microtubule cytoskeleton organization involved in homologous chromosome segregation(GO:0090172)
0.0 0.2 GO:0010047 fruit dehiscence(GO:0010047)
0.0 0.4 GO:0009395 phospholipid catabolic process(GO:0009395)
0.0 0.1 GO:0030638 polyketide metabolic process(GO:0030638)
0.0 0.1 GO:0080009 mRNA methylation(GO:0080009)
0.0 0.1 GO:0046166 glyceraldehyde-3-phosphate biosynthetic process(GO:0046166)
0.0 0.4 GO:0006284 base-excision repair(GO:0006284)
0.0 0.1 GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864)
0.0 0.2 GO:0010206 photosystem II repair(GO:0010206)
0.0 0.3 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.0 0.3 GO:0008284 positive regulation of cell proliferation(GO:0008284)
0.0 1.7 GO:0009814 defense response, incompatible interaction(GO:0009814)
0.0 3.1 GO:0071456 cellular response to hypoxia(GO:0071456)
0.0 0.3 GO:0080188 RNA-directed DNA methylation(GO:0080188)
0.0 0.0 GO:0080051 cutin transport(GO:0080051)
0.0 1.0 GO:0019684 photosynthesis, light reaction(GO:0019684)
0.0 0.2 GO:0016109 tetraterpenoid biosynthetic process(GO:0016109) carotenoid biosynthetic process(GO:0016117)
0.0 0.5 GO:0019395 fatty acid oxidation(GO:0019395)
0.0 0.0 GO:0044154 histone H3-K14 acetylation(GO:0044154)
0.0 0.2 GO:0006574 valine catabolic process(GO:0006574)
0.0 0.1 GO:0046901 tetrahydrofolylpolyglutamate biosynthetic process(GO:0046901)
0.0 0.2 GO:0046513 ceramide biosynthetic process(GO:0046513)
0.0 0.3 GO:0043269 regulation of ion transport(GO:0043269)
0.0 0.0 GO:1902586 transport of virus in host, cell to cell(GO:0046740) multi-organism intercellular transport(GO:1902586)
0.0 0.2 GO:2000032 regulation of morphogenesis of a branching structure(GO:0060688) regulation of secondary shoot formation(GO:2000032)
0.0 0.1 GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening(GO:0000289)
0.0 0.3 GO:0006282 regulation of DNA repair(GO:0006282)
0.0 0.2 GO:0046519 sphingoid metabolic process(GO:0046519)
0.0 0.3 GO:1900150 regulation of defense response to fungus(GO:1900150)
0.0 0.1 GO:0019323 pentose catabolic process(GO:0019323)
0.0 0.1 GO:0043461 proton-transporting ATP synthase complex assembly(GO:0043461) proton-transporting ATP synthase complex biogenesis(GO:0070272)
0.0 0.3 GO:0046219 tryptophan biosynthetic process(GO:0000162) indolalkylamine biosynthetic process(GO:0046219)
0.0 0.1 GO:0006421 asparaginyl-tRNA aminoacylation(GO:0006421)
0.0 0.0 GO:0008614 pyridoxine metabolic process(GO:0008614)
0.0 0.4 GO:0000122 negative regulation of transcription from RNA polymerase II promoter(GO:0000122)
0.0 0.0 GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process(GO:0006015) 5-phosphoribose 1-diphosphate metabolic process(GO:0046391)
0.0 0.3 GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter(GO:0032968)
0.0 0.3 GO:0090630 activation of GTPase activity(GO:0090630)
0.0 0.2 GO:0009880 embryonic pattern specification(GO:0009880)
0.0 0.0 GO:0006386 termination of RNA polymerase III transcription(GO:0006386)
0.0 0.1 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.0 0.1 GO:0015800 acidic amino acid transport(GO:0015800)
0.0 0.1 GO:0070814 hydrogen sulfide biosynthetic process(GO:0070814)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.6 GO:0009538 photosystem I reaction center(GO:0009538)
0.2 0.5 GO:0005652 nuclear lamina(GO:0005652)
0.1 0.5 GO:0010007 magnesium chelatase complex(GO:0010007)
0.1 0.4 GO:0030132 clathrin coat of trans-Golgi network vesicle(GO:0030130) clathrin coat of coated pit(GO:0030132)
0.1 0.2 GO:0005775 vacuolar lumen(GO:0005775)
0.1 1.1 GO:0000786 nucleosome(GO:0000786)
0.1 1.9 GO:0009654 photosystem II oxygen evolving complex(GO:0009654)
0.1 0.3 GO:0005960 glycine cleavage complex(GO:0005960)
0.1 0.3 GO:0097550 transcriptional preinitiation complex(GO:0097550)
0.1 0.2 GO:0030093 chloroplast photosystem I(GO:0030093)
0.1 0.3 GO:0005782 peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.1 0.4 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.0 0.1 GO:0033281 TAT protein transport complex(GO:0033281)
0.0 0.7 GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598)
0.0 0.2 GO:0000812 Swr1 complex(GO:0000812)
0.0 0.9 GO:0009898 cytoplasmic side of plasma membrane(GO:0009898)
0.0 0.3 GO:0005787 signal peptidase complex(GO:0005787)
0.0 0.2 GO:0030062 mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062)
0.0 0.1 GO:0010369 chromocenter(GO:0010369)
0.0 0.3 GO:0005956 protein kinase CK2 complex(GO:0005956)
0.0 0.2 GO:0031931 TORC1 complex(GO:0031931) TOR complex(GO:0038201)
0.0 0.2 GO:0048476 Holliday junction resolvase complex(GO:0048476)
0.0 0.2 GO:0009897 external side of plasma membrane(GO:0009897)
0.0 0.3 GO:0009368 endopeptidase Clp complex(GO:0009368)
0.0 0.2 GO:0000796 condensin complex(GO:0000796)
0.0 0.2 GO:0017053 transcriptional repressor complex(GO:0017053)
0.0 0.2 GO:0005673 transcription factor TFIIE complex(GO:0005673)
0.0 0.4 GO:0048500 signal recognition particle(GO:0048500)
0.0 0.4 GO:0005801 cis-Golgi network(GO:0005801)
0.0 1.1 GO:0010319 stromule(GO:0010319)
0.0 0.1 GO:0001673 male germ cell nucleus(GO:0001673)
0.0 0.2 GO:0010445 nuclear dicing body(GO:0010445)
0.0 0.7 GO:0031978 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.0 0.5 GO:0009508 cytoplasmic chromosome(GO:0000229) plastid chromosome(GO:0009508)
0.0 0.5 GO:0031965 nuclear membrane(GO:0031965)
0.0 0.3 GO:0032300 mismatch repair complex(GO:0032300)
0.0 0.1 GO:0009509 chromoplast(GO:0009509)
0.0 0.1 GO:0031429 box H/ACA snoRNP complex(GO:0031429) box H/ACA RNP complex(GO:0072588)
0.0 2.7 GO:0000790 nuclear chromatin(GO:0000790)
0.0 0.1 GO:0032044 DSIF complex(GO:0032044)
0.0 0.1 GO:0034657 GID complex(GO:0034657)
0.0 0.2 GO:0000127 transcription factor TFIIIC complex(GO:0000127)
0.0 0.4 GO:0005871 kinesin complex(GO:0005871)
0.0 0.2 GO:0031231 integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)
0.0 0.9 GO:0010287 plastoglobule(GO:0010287)
0.0 0.3 GO:0005689 U12-type spliceosomal complex(GO:0005689)
0.0 3.9 GO:0009534 chloroplast thylakoid(GO:0009534)
0.0 0.1 GO:0043189 NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562)
0.0 0.3 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.0 0.8 GO:0000785 chromatin(GO:0000785)
0.0 0.2 GO:0000418 DNA-directed RNA polymerase IV complex(GO:0000418)
0.0 0.0 GO:0002189 ribose phosphate diphosphokinase complex(GO:0002189)
0.0 0.8 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.0 0.2 GO:0051286 growing cell tip(GO:0035838) cell tip(GO:0051286) pollen tube tip(GO:0090404)
0.0 1.1 GO:0033643 host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217)
0.0 0.2 GO:0000784 nuclear chromosome, telomeric region(GO:0000784)
0.0 0.1 GO:0005788 endoplasmic reticulum lumen(GO:0005788)
0.0 0.6 GO:0009707 chloroplast outer membrane(GO:0009707)
0.0 0.4 GO:0016592 mediator complex(GO:0016592)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 2.4 GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity(GO:0004066)
0.2 0.9 GO:0004349 glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350)
0.2 1.1 GO:0031492 nucleosomal DNA binding(GO:0031492)
0.2 0.6 GO:0015117 thiosulfate transmembrane transporter activity(GO:0015117)
0.2 0.7 GO:0047782 coniferin beta-glucosidase activity(GO:0047782)
0.2 0.6 GO:0008909 isochorismate synthase activity(GO:0008909)
0.2 0.5 GO:0019166 trans-2-enoyl-CoA reductase (NADPH) activity(GO:0019166)
0.2 0.5 GO:0035671 enone reductase activity(GO:0035671)
0.2 1.0 GO:0009041 uridylate kinase activity(GO:0009041)
0.1 0.3 GO:0004127 cytidylate kinase activity(GO:0004127)
0.1 0.4 GO:0032131 alkylated DNA binding(GO:0032131)
0.1 0.1 GO:0015391 nucleobase:cation symporter activity(GO:0015391)
0.1 0.8 GO:0070547 cystathionine beta-lyase activity(GO:0004121) L-tyrosine:2-oxoglutarate aminotransferase activity(GO:0004838) L-tyrosine aminotransferase activity(GO:0070547)
0.1 0.7 GO:0050113 inositol oxygenase activity(GO:0050113)
0.1 0.5 GO:0016165 linoleate 13S-lipoxygenase activity(GO:0016165)
0.1 1.0 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.1 1.0 GO:0016987 core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987)
0.1 0.3 GO:0016642 glycine dehydrogenase (decarboxylating) activity(GO:0004375) oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor(GO:0016642)
0.1 0.4 GO:1901982 disaccharide binding(GO:0048030) maltose binding(GO:1901982)
0.1 1.1 GO:0008453 alanine-glyoxylate transaminase activity(GO:0008453)
0.1 0.5 GO:0004781 sulfate adenylyltransferase (ATP) activity(GO:0004781)
0.1 0.1 GO:0070492 oligosaccharide binding(GO:0070492)
0.1 0.8 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.1 0.3 GO:0051377 mannose-ethanolamine phosphotransferase activity(GO:0051377)
0.1 0.5 GO:0016629 12-oxophytodienoate reductase activity(GO:0016629)
0.1 0.4 GO:0046593 mandelonitrile lyase activity(GO:0046593)
0.1 0.5 GO:0016851 magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003)
0.1 0.7 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.1 0.9 GO:0004860 protein kinase inhibitor activity(GO:0004860)
0.1 0.4 GO:0042800 histone methyltransferase activity (H3-K4 specific)(GO:0042800)
0.1 0.3 GO:0046423 allene-oxide cyclase activity(GO:0046423)
0.1 0.3 GO:0004123 cystathionine gamma-lyase activity(GO:0004123)
0.1 0.5 GO:0045547 dehydrodolichyl diphosphate synthase activity(GO:0045547)
0.1 0.2 GO:0016672 oxidoreductase activity, acting on a sulfur group of donors, quinone or similar compound as acceptor(GO:0016672) glutathione dehydrogenase (ascorbate) activity(GO:0045174)
0.1 0.4 GO:0010313 phytochrome binding(GO:0010313)
0.1 0.2 GO:0010291 carotene beta-ring hydroxylase activity(GO:0010291)
0.1 0.2 GO:0000386 second spliceosomal transesterification activity(GO:0000386)
0.1 0.6 GO:0009916 alternative oxidase activity(GO:0009916)
0.1 0.3 GO:0000268 peroxisome targeting sequence binding(GO:0000268)
0.1 0.4 GO:0010277 chlorophyllide a oxygenase [overall] activity(GO:0010277)
0.1 0.5 GO:0008157 protein phosphatase 1 binding(GO:0008157)
0.1 0.4 GO:0010295 (+)-abscisic acid 8'-hydroxylase activity(GO:0010295)
0.1 0.3 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
0.1 0.2 GO:0008442 3-hydroxyisobutyrate dehydrogenase activity(GO:0008442)
0.1 0.4 GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity(GO:0045156)
0.1 0.2 GO:0010242 oxygen evolving activity(GO:0010242)
0.1 0.4 GO:0032977 membrane insertase activity(GO:0032977)
0.1 0.7 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.1 0.2 GO:0000309 nicotinamide-nucleotide adenylyltransferase activity(GO:0000309)
0.1 0.9 GO:0005375 copper ion transmembrane transporter activity(GO:0005375)
0.1 0.2 GO:0036381 pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity(GO:0036381)
0.1 0.3 GO:0001664 G-protein coupled receptor binding(GO:0001664) G-protein beta/gamma-subunit complex binding(GO:0031683)
0.1 0.9 GO:0015114 phosphate ion transmembrane transporter activity(GO:0015114)
0.0 0.2 GO:0050291 sphingosine N-acyltransferase activity(GO:0050291)
0.0 0.2 GO:0000702 oxidized base lesion DNA N-glycosylase activity(GO:0000702)
0.0 0.3 GO:0051747 cytosine C-5 DNA demethylase activity(GO:0051747)
0.0 0.2 GO:0033744 L-methionine:thioredoxin-disulfide S-oxidoreductase activity(GO:0033744) L-methionine-(S)-S-oxide reductase activity(GO:0036456)
0.0 0.9 GO:0004022 alcohol dehydrogenase (NAD) activity(GO:0004022)
0.0 0.3 GO:0052654 L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656)
0.0 0.3 GO:0016781 phosphotransferase activity, paired acceptors(GO:0016781)
0.0 0.2 GO:0003863 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity(GO:0003863)
0.0 1.0 GO:0008327 methyl-CpG binding(GO:0008327)
0.0 0.2 GO:0052659 inositol-polyphosphate 5-phosphatase activity(GO:0004445) inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity(GO:0052659) inositol tetrakisphosphate phosphatase activity(GO:0052743)
0.0 0.2 GO:0004075 biotin carboxylase activity(GO:0004075)
0.0 0.2 GO:0005366 myo-inositol:proton symporter activity(GO:0005366)
0.0 0.6 GO:0004708 MAP kinase kinase activity(GO:0004708)
0.0 0.3 GO:0000990 transcription factor activity, core RNA polymerase binding(GO:0000990)
0.0 0.2 GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives(GO:0016856)
0.0 0.2 GO:0004614 phosphoglucomutase activity(GO:0004614)
0.0 0.2 GO:0052578 alpha-farnesene synthase activity(GO:0052578)
0.0 0.3 GO:0045543 gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634)
0.0 0.2 GO:0050734 hydroxycinnamoyltransferase activity(GO:0050734)
0.0 0.1 GO:0046027 phospholipid:diacylglycerol acyltransferase activity(GO:0046027)
0.0 0.2 GO:1902387 ceramide transporter activity(GO:0035620) sphingolipid transporter activity(GO:0046624) ceramide 1-phosphate binding(GO:1902387) ceramide 1-phosphate transporter activity(GO:1902388)
0.0 0.3 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.0 0.1 GO:0004826 phenylalanine-tRNA ligase activity(GO:0004826)
0.0 0.2 GO:0017050 D-erythro-sphingosine kinase activity(GO:0017050)
0.0 0.1 GO:0008936 nicotinamidase activity(GO:0008936)
0.0 0.1 GO:0052901 spermine:oxygen oxidoreductase (spermidine-forming) activity(GO:0052901)
0.0 0.1 GO:0080045 quercetin 3'-O-glucosyltransferase activity(GO:0080045)
0.0 0.4 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.0 0.2 GO:0004567 beta-mannosidase activity(GO:0004567)
0.0 0.2 GO:0022841 leak channel activity(GO:0022840) potassium ion leak channel activity(GO:0022841) narrow pore channel activity(GO:0022842)
0.0 0.3 GO:0015210 pyrimidine nucleobase transmembrane transporter activity(GO:0005350) uracil transmembrane transporter activity(GO:0015210)
0.0 0.2 GO:0030371 translation repressor activity(GO:0030371)
0.0 0.1 GO:0047635 L-alanine:2-oxoglutarate aminotransferase activity(GO:0004021) alanine-oxo-acid transaminase activity(GO:0047635)
0.0 0.3 GO:0003905 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.0 0.2 GO:0003997 acyl-CoA oxidase activity(GO:0003997)
0.0 0.4 GO:0043175 RNA polymerase II core binding(GO:0000993) RNA polymerase core enzyme binding(GO:0043175)
0.0 0.2 GO:0004126 cytidine deaminase activity(GO:0004126)
0.0 0.1 GO:0004793 threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732)
0.0 0.1 GO:0031071 cysteine desulfurase activity(GO:0031071)
0.0 0.2 GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0003830)
0.0 0.1 GO:0036218 dTTP diphosphatase activity(GO:0036218)
0.0 0.4 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 0.4 GO:0061608 nuclear import signal receptor activity(GO:0061608)
0.0 0.3 GO:0008169 C-methyltransferase activity(GO:0008169)
0.0 0.1 GO:0003852 2-isopropylmalate synthase activity(GO:0003852)
0.0 0.6 GO:0017069 snRNA binding(GO:0017069)
0.0 3.4 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.0 0.1 GO:0034513 box H/ACA snoRNA binding(GO:0034513)
0.0 0.1 GO:0004609 phosphatidylserine decarboxylase activity(GO:0004609)
0.0 0.1 GO:0016531 copper chaperone activity(GO:0016531)
0.0 0.3 GO:0047372 acylglycerol lipase activity(GO:0047372)
0.0 0.1 GO:0051669 levanase activity(GO:0031219) fructan beta-fructosidase activity(GO:0051669)
0.0 0.1 GO:0071614 linoleic acid epoxygenase activity(GO:0071614)
0.0 0.1 GO:0022858 L-alanine transmembrane transporter activity(GO:0015180) gamma-aminobutyric acid transmembrane transporter activity(GO:0015185) alanine transmembrane transporter activity(GO:0022858)
0.0 0.3 GO:0005452 inorganic anion exchanger activity(GO:0005452)
0.0 0.5 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.0 0.2 GO:0004045 aminoacyl-tRNA hydrolase activity(GO:0004045)
0.0 0.1 GO:0008174 mRNA methyltransferase activity(GO:0008174)
0.0 1.1 GO:0017137 Rab GTPase binding(GO:0017137)
0.0 0.1 GO:0004750 ribulose-phosphate 3-epimerase activity(GO:0004750)
0.0 0.2 GO:0043495 protein anchor(GO:0043495)
0.0 0.2 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
0.0 0.1 GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity(GO:0003983)
0.0 0.3 GO:0004930 G-protein coupled receptor activity(GO:0004930)
0.0 0.1 GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity(GO:0042132)
0.0 5.3 GO:0005509 calcium ion binding(GO:0005509)
0.0 0.2 GO:0030674 protein binding, bridging(GO:0030674)
0.0 0.2 GO:0032453 histone demethylase activity (H3-K4 specific)(GO:0032453) histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647)
0.0 0.1 GO:0030527 structural constituent of chromatin(GO:0030527)
0.0 0.2 GO:0047617 acyl-CoA hydrolase activity(GO:0047617)
0.0 0.4 GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702)
0.0 0.2 GO:0015295 sugar:proton symporter activity(GO:0005351) cation:sugar symporter activity(GO:0005402) solute:proton symporter activity(GO:0015295)
0.0 0.1 GO:0004807 triose-phosphate isomerase activity(GO:0004807)
0.0 0.3 GO:0030983 mismatched DNA binding(GO:0030983)
0.0 0.4 GO:0030276 clathrin binding(GO:0030276)
0.0 0.2 GO:0015175 neutral amino acid transmembrane transporter activity(GO:0015175)
0.0 0.2 GO:0070567 cytidylyltransferase activity(GO:0070567)
0.0 0.3 GO:0051117 ATPase binding(GO:0051117)
0.0 0.2 GO:0008061 chitin binding(GO:0008061)
0.0 0.1 GO:0003746 translation elongation factor activity(GO:0003746)
0.0 0.1 GO:0051723 protein methylesterase activity(GO:0051723)
0.0 0.3 GO:0008353 RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353)
0.0 0.1 GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds(GO:0016863)
0.0 0.2 GO:0051920 thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920)
0.0 0.3 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.0 0.2 GO:0016688 L-ascorbate peroxidase activity(GO:0016688)
0.0 2.2 GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709)
0.0 0.2 GO:0031491 nucleosome binding(GO:0031491)
0.0 0.1 GO:0035673 oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680)
0.0 0.6 GO:0003713 transcription coactivator activity(GO:0003713)
0.0 0.3 GO:0016251 obsolete general RNA polymerase II transcription factor activity(GO:0016251)
0.0 0.1 GO:0002151 G-quadruplex RNA binding(GO:0002151)
0.0 0.5 GO:0003714 transcription corepressor activity(GO:0003714)
0.0 0.2 GO:0015145 monosaccharide transmembrane transporter activity(GO:0015145)
0.0 0.1 GO:0016314 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity(GO:0016314)
0.0 0.1 GO:0016783 sulfurtransferase activity(GO:0016783)
0.0 0.1 GO:0004816 asparagine-tRNA ligase activity(GO:0004816)
0.0 0.3 GO:0097602 cullin family protein binding(GO:0097602)
0.0 0.0 GO:0004749 ribose phosphate diphosphokinase activity(GO:0004749)
0.0 0.2 GO:0002161 aminoacyl-tRNA editing activity(GO:0002161)
0.0 0.5 GO:0004707 MAP kinase activity(GO:0004707)
0.0 0.1 GO:0004326 tetrahydrofolylpolyglutamate synthase activity(GO:0004326)
0.0 0.3 GO:0019200 carbohydrate kinase activity(GO:0019200)
0.0 0.1 GO:0033613 activating transcription factor binding(GO:0033613)
0.0 0.4 GO:0051087 chaperone binding(GO:0051087)
0.0 0.4 GO:0015385 sodium:proton antiporter activity(GO:0015385)
0.0 2.0 GO:0003924 GTPase activity(GO:0003924)
0.0 0.2 GO:0003725 double-stranded RNA binding(GO:0003725)
0.0 0.1 GO:0009378 four-way junction helicase activity(GO:0009378)
0.0 0.3 GO:0016168 chlorophyll binding(GO:0016168)
0.0 0.4 GO:0032561 GTP binding(GO:0005525) guanyl nucleotide binding(GO:0019001) guanyl ribonucleotide binding(GO:0032561)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 PID CIRCADIAN PATHWAY Circadian rhythm pathway
0.0 0.1 PID P73PATHWAY p73 transcription factor network
0.0 0.2 PID MYC ACTIV PATHWAY Validated targets of C-MYC transcriptional activation

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 REACTOME L1CAM INTERACTIONS Genes involved in L1CAM interactions
0.1 0.4 REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA Genes involved in Processing of Capped Intron-Containing Pre-mRNA
0.1 0.2 REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression
0.0 0.3 REACTOME G0 AND EARLY G1 Genes involved in G0 and Early G1
0.0 0.2 REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism
0.0 0.1 REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Dopamine Neurotransmitter Release Cycle
0.0 0.1 REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS Genes involved in Golgi Associated Vesicle Biogenesis