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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G32730
Z-value: 1.10
Transcription factors associated with AT4G32730
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G32730
|
AT4G32730 | Homeodomain-like protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| PC-MYB1 | arTal_v1_Chr4_+_15790133_15790133 | 0.43 | 1.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 1.60 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr1_+_5872024_5872024 Show fit | 1.49 |
AT1G17180.1
|
glutathione S-transferase TAU 25 |
|
| arTal_v1_Chr4_-_15954803_15954803 Show fit | 1.42 |
AT4G33070.1
|
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein |
|
| arTal_v1_Chr1_+_3019639_3019639 Show fit | 1.37 |
AT1G09350.1
|
galactinol synthase 3 |
|
| arTal_v1_Chr4_+_10707344_10707378 Show fit | 1.29 |
AT4G19690.2
AT4G19690.1 |
iron-regulated transporter 1 |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 1.28 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr1_+_3020221_3020221 Show fit | 1.27 |
AT1G09350.2
|
galactinol synthase 3 |
|
| arTal_v1_Chr5_+_19481897_19481897 Show fit | 1.22 |
AT5G48070.1
|
xyloglucan endotransglucosylase/hydrolase 20 |
|
| arTal_v1_Chr3_-_82182_82182 Show fit | 1.16 |
AT3G01260.1
|
Galactose mutarotase-like superfamily protein |
|
| arTal_v1_Chr3_-_21085245_21085245 Show fit | 1.16 |
AT3G56970.1
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G32730
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 6.1 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.1 | 4.0 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 0.1 | 3.1 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.0 | 2.8 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.5 | 2.6 | GO:0072708 | response to sorbitol(GO:0072708) |
| 0.2 | 2.1 | GO:0009804 | coumarin metabolic process(GO:0009804) |
| 0.3 | 2.0 | GO:0010106 | cellular response to iron ion starvation(GO:0010106) |
| 0.2 | 1.9 | GO:1902222 | L-phenylalanine catabolic process(GO:0006559) erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process(GO:1902222) |
| 0.0 | 1.9 | GO:0019758 | S-glycoside biosynthetic process(GO:0016144) glycosinolate biosynthetic process(GO:0019758) glucosinolate biosynthetic process(GO:0019761) |
| 0.1 | 1.7 | GO:0000027 | ribosomal large subunit assembly(GO:0000027) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 15.0 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 13.3 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.1 | 8.4 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 5.8 | GO:0055044 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.0 | 4.6 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 4.2 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.0 | 4.0 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.2 | 2.1 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.1 | 1.5 | GO:0098554 | integral component of cytoplasmic side of endoplasmic reticulum membrane(GO:0071458) cytoplasmic side of endoplasmic reticulum membrane(GO:0098554) |
| 0.3 | 1.4 | GO:0033597 | mitotic checkpoint complex(GO:0033597) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.4 | GO:0003924 | GTPase activity(GO:0003924) |
| 0.0 | 3.5 | GO:0042626 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492) |
| 0.0 | 3.4 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.3 | 3.1 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 0.0 | 2.8 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.2 | 2.7 | GO:0010329 | auxin efflux transmembrane transporter activity(GO:0010329) |
| 0.2 | 2.6 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.3 | 2.5 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.0 | 2.5 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.1 | 2.1 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.3 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.2 | 1.0 | ST DIFFERENTIATION PATHWAY IN PC12 CELLS | Differentiation Pathway in PC12 Cells; this is a specific case of PAC1 Receptor Pathway. |
| 0.2 | 0.5 | PID BCR 5PATHWAY | BCR signaling pathway |
| 0.2 | 0.5 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.5 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.4 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.1 | 0.4 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.0 | 0.4 | PID ATR PATHWAY | ATR signaling pathway |
| 0.2 | 0.3 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.1 | 0.3 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.2 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.3 | 1.0 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.2 | 0.7 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.1 | 0.7 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.1 | 0.6 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 0.6 | REACTOME ACTIVATION OF ATR IN RESPONSE TO REPLICATION STRESS | Genes involved in Activation of ATR in response to replication stress |
| 0.2 | 0.5 | REACTOME PHOSPHORYLATION OF CD3 AND TCR ZETA CHAINS | Genes involved in Phosphorylation of CD3 and TCR zeta chains |
| 0.1 | 0.5 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
| 0.1 | 0.5 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 0.5 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |