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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G31800
Z-value: 2.33
Transcription factors associated with AT4G31800
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G31800
|
AT4G31800 | WRKY DNA-binding protein 18 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY18 | arTal_v1_Chr4_+_15383633_15383633 | 0.34 | 2.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_2992618_2992618 Show fit | 2.31 |
AT4G05631.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_209208_209208 Show fit | 2.01 |
AT1G01580.1
|
ferric reduction oxidase 2 |
|
| arTal_v1_Chr1_+_208995_208995 Show fit | 1.99 |
AT1G01580.2
|
ferric reduction oxidase 2 |
|
| arTal_v1_Chr4_+_10707344_10707378 Show fit | 1.97 |
AT4G19690.2
AT4G19690.1 |
iron-regulated transporter 1 |
|
| arTal_v1_Chr5_-_19807853_19807853 Show fit | 1.77 |
AT5G48850.1
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
|
| arTal_v1_Chr4_-_11850436_11850436 Show fit | 1.71 |
AT4G22490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_+_15451988_15451988 Show fit | 1.70 |
AT4G31940.1
|
cytochrome P450, family 82, subfamily C, polypeptide 4 |
|
| arTal_v1_Chr5_-_1459039_1459039 Show fit | 1.67 |
AT5G04950.1
|
nicotianamine synthase 1 |
|
| arTal_v1_Chr2_+_16216752_16216752 Show fit | 1.66 |
AT2G38800.1
|
Plant calmodulin-binding protein-like protein |
|
| arTal_v1_Chr3_+_6023844_6023929 Show fit | 1.61 |
AT3G17609.2
AT3G17609.3 AT3G17609.4 AT3G17609.1 |
HY5-homolog |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G31800
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 18.0 | GO:0018209 | peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209) |
| 0.1 | 17.0 | GO:0006412 | translation(GO:0006412) |
| 0.0 | 14.1 | GO:0006468 | protein phosphorylation(GO:0006468) |
| 0.2 | 8.0 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.1 | 7.8 | GO:0006457 | protein folding(GO:0006457) |
| 0.2 | 6.3 | GO:0055072 | iron ion homeostasis(GO:0055072) |
| 0.2 | 5.6 | GO:0009582 | detection of external stimulus(GO:0009581) detection of abiotic stimulus(GO:0009582) |
| 0.0 | 5.5 | GO:0046686 | response to cadmium ion(GO:0046686) |
| 0.2 | 4.9 | GO:0010218 | response to far red light(GO:0010218) |
| 0.2 | 4.8 | GO:0009306 | protein secretion(GO:0009306) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 181.9 | GO:0005829 | cytosol(GO:0005829) |
| 0.1 | 62.1 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.0 | 45.3 | GO:0009536 | plastid(GO:0009536) |
| 0.0 | 35.5 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.1 | 26.4 | GO:0055044 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.1 | 19.4 | GO:0009579 | thylakoid(GO:0009579) |
| 0.1 | 15.0 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.0 | 15.0 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.1 | 10.9 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 10.7 | GO:0005635 | nuclear envelope(GO:0005635) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 34.4 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.1 | 31.2 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.1 | 21.3 | GO:0043531 | ADP binding(GO:0043531) |
| 0.0 | 14.0 | GO:0008270 | zinc ion binding(GO:0008270) |
| 0.1 | 13.9 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.3 | 11.7 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.0 | 11.4 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.2 | 10.0 | GO:0009931 | calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857) |
| 0.0 | 9.1 | GO:0004672 | protein kinase activity(GO:0004672) |
| 0.0 | 7.4 | GO:0005509 | calcium ion binding(GO:0005509) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 2.9 | ST DIFFERENTIATION PATHWAY IN PC12 CELLS | Differentiation Pathway in PC12 Cells; this is a specific case of PAC1 Receptor Pathway. |
| 0.5 | 1.8 | SIG BCR SIGNALING PATHWAY | Members of the BCR signaling pathway |
| 0.2 | 1.7 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.5 | 1.6 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.4 | 1.5 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.1 | 1.5 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.5 | 1.4 | PID ENDOTHELIN PATHWAY | Endothelins |
| 0.1 | 0.9 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.9 | PID ATR PATHWAY | ATR signaling pathway |
| 0.2 | 0.8 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 4.3 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
| 1.2 | 3.6 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.6 | 3.2 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.3 | 3.0 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.6 | 2.2 | REACTOME PROLONGED ERK ACTIVATION EVENTS | Genes involved in Prolonged ERK activation events |
| 0.5 | 2.2 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.3 | 2.1 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.4 | 1.8 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.3 | 1.8 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.4 | 1.7 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |