Project

GSE130291:vernalization in Arabidopsis thaliana

Navigation
Downloads

Results for AT4G31060

Z-value: 0.79

Transcription factors associated with AT4G31060

Gene Symbol Gene ID Gene Info
AT4G31060 Integrase-type DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT4G31060arTal_v1_Chr4_+_15116148_15116148-0.058.7e-01Click!

Activity profile of AT4G31060 motif

Sorted Z-values of AT4G31060 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_-_17606924 0.63 AT4G37450.1
AT4G37450.2
arabinogalactan protein 18
Chr5_+_16768935 0.61 AT5G41900.1
alpha/beta-Hydrolases superfamily protein
Chr3_-_8589754 0.60 AT3G23810.1
S-adenosyl-l-homocysteine (SAH) hydrolase 2
Chr3_-_565801 0.59 AT3G02640.1
transmembrane protein
Chr1_-_1307973 0.56 AT1G04680.1
Pectin lyase-like superfamily protein
Chr2_-_17992047 0.53 AT2G43290.1
Calcium-binding EF-hand family protein
Chr4_+_15401640 0.51 AT4G31840.1
early nodulin-like protein 15
Chr1_-_8501542 0.51 AT1G24020.1
MLP-like protein 423
Chr4_+_1032350 0.51 AT4G02330.1
Plant invertase/pectin methylesterase inhibitor superfamily
Chr1_-_8502065 0.51 AT1G24020.2
MLP-like protein 423
Chr1_-_9956960 0.50 AT1G28370.1
AT1G28370.2
ERF domain protein 11
Chr1_+_22073352 0.49 AT1G59970.1
Matrixin family protein
Chr4_-_7545512 0.47 AT4G12880.1
early nodulin-like protein 19
Chr5_+_17973775 0.47 AT5G44575.1
hypothetical protein
Chr4_-_14002069 0.47 AT4G28250.2
AT4G28250.3
AT4G28250.4
AT4G28250.1
expansin B3
Chr3_-_2905931 0.46 AT3G09440.4
AT3G09440.2
AT3G09440.1
Heat shock protein 70 (Hsp 70) family protein
Chr4_+_12137995 0.46 AT4G23180.1
AT4G23180.3
AT4G23180.2
cysteine-rich RLK (RECEPTOR-like protein kinase) 10
Chr1_-_28581315 0.45 AT1G76160.1
SKU5 similar 5
Chr3_-_2905729 0.45 AT3G09440.3
Heat shock protein 70 (Hsp 70) family protein
Chr2_+_11566288 0.45 AT2G27080.1
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr4_-_17979740 0.45 AT4G38400.1
AT4G38401.1
expansin-like A2
hypothetical protein
Chr2_+_10662190 0.44 AT2G25060.1
early nodulin-like protein 14
Chr1_+_24602033 0.44 AT1G66090.1
Disease resistance protein (TIR-NBS class)
Chr3_+_19417372 0.44 AT3G52370.2
AT3G52370.1
FASCICLIN-like arabinogalactan protein 15 precursor
Chr5_-_4986377 0.43 AT5G15350.1
early nodulin-like protein 17
Chr3_-_5954091 0.42 AT3G17390.1
S-adenosylmethionine synthetase family protein
Chr1_-_15607966 0.42 AT1G41830.1
SKU5-similar 6
Chr5_-_17289958 0.42 AT5G43070.1
WPP domain protein 1
Chr3_+_7507240 0.42 AT3G21330.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_-_1136397 0.41 AT3G04290.1
Li-tolerant lipase 1
Chr1_-_5684909 0.41 AT1G16630.1
transmembrane protein
Chr4_+_160643 0.41 AT4G00360.1
cytochrome P450, family 86, subfamily A, polypeptide 2
Chr2_+_14003128 0.40 AT2G32990.1
glycosyl hydrolase 9B8
Chr5_-_25843555 0.40 AT5G64660.1
CYS, MET, PRO, and GLY protein 2
Chr2_+_15059763 0.40 AT2G35860.1
FASCICLIN-like arabinogalactan protein 16 precursor
Chr4_-_7545326 0.40 AT4G12880.2
early nodulin-like protein 19
Chr3_+_983057 0.39 AT3G03850.1
SAUR-like auxin-responsive protein family
Chr5_-_16236 0.39 AT5G01040.1
laccase 8
Chr1_-_26515188 0.39 AT1G70370.2
AT1G70370.1
polygalacturonase 2
Chr1_+_23911024 0.38 AT1G64390.1
glycosyl hydrolase 9C2
Chr4_-_9754161 0.38 AT4G17490.1
ethylene responsive element binding factor 6
Chr1_+_27308513 0.38 AT1G72520.1
PLAT/LH2 domain-containing lipoxygenase family protein
Chr5_+_16202142 0.37 AT5G40460.1
cyclin-dependent kinase inhibitor SMR3-like protein
Chr1_-_23460884 0.37 AT1G63245.1
CLAVATA3/ESR-RELATED 14
Chr5_-_19040456 0.37 AT5G46900.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr2_+_11563933 0.37 AT2G27080.2
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr3_+_20296130 0.37 AT3G54810.2
Plant-specific GATA-type zinc finger transcription factor family protein
Chr3_+_20296416 0.36 AT3G54810.1
Plant-specific GATA-type zinc finger transcription factor family protein
Chr5_+_3799408 0.36 AT5G11790.2
AT5G11790.1
N-MYC downregulated-like 2
Chr3_+_11252807 0.36 AT3G29320.1
Glycosyl transferase, family 35
Chr5_+_25322975 0.36 AT5G63130.2
AT5G63130.1
Octicosapeptide/Phox/Bem1p family protein
Chr5_-_671687 0.35 AT5G02890.1
HXXXD-type acyl-transferase family protein
Chr4_-_846792 0.35 AT4G01950.1
AT4G01950.2
glycerol-3-phosphate acyltransferase 3
Chr3_+_10505711 0.35 AT3G28180.1
Cellulose-synthase-like C4
Chr4_-_8307934 0.35 AT4G14440.1
3-hydroxyacyl-CoA dehydratase 1
Chr5_-_8406132 0.35 AT5G24570.1
AT5G24575.1
hypothetical protein
hypothetical protein
Chr1_-_19458069 0.34 AT1G52240.1
rop guanine nucleotide exchange factor-like protein
Chr1_-_3880391 0.34 AT1G11545.1
xyloglucan endotransglucosylase/hydrolase 8
Chr4_+_9698940 0.34 AT4G17340.1
tonoplast intrinsic protein 2;2
Chr5_-_22560461 0.34 AT5G55730.2
AT5G55730.1
FASCICLIN-like arabinogalactan 1
Chr3_+_8586359 0.33 AT3G23805.1
ralf-like 24
Chr3_-_7656053 0.33 AT3G21720.1
isocitrate lyase
Chr5_-_8916856 0.33 AT5G25610.1
BURP domain-containing protein
Chr5_-_5137707 0.32 AT5G15740.1
O-fucosyltransferase family protein
Chr5_-_23127724 0.32 AT5G57123.1
hypothetical protein
Chr4_-_7493080 0.32 AT4G12730.1
FASCICLIN-like arabinogalactan 2
Chr3_+_17949416 0.32 AT3G48460.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_+_460395 0.32 AT4G01060.3
AT4G01060.2
AT4G01060.1
CAPRICE-like MYB3
Chr1_-_7043392 0.32 AT1G20340.1
Cupredoxin superfamily protein
Chr2_+_1676999 0.32 AT2G04780.2
FASCICLIN-like arabinoogalactan 7
Chr5_+_2680401 0.31 AT5G08330.1
TCP family transcription factor
Chr2_+_1676717 0.31 AT2G04780.1
FASCICLIN-like arabinoogalactan 7
Chr1_-_24023424 0.31 AT1G64640.1
early nodulin-like protein 8
Chr1_-_20706893 0.31 AT1G55450.2
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_+_5314817 0.31 AT3G15680.1
AT3G15680.2
Ran BP2/NZF zinc finger-like superfamily protein
Chr3_-_1822858 0.31 AT3G06030.1
NPK1-related protein kinase 3
Chr3_+_10517977 0.31 AT3G28200.1
Peroxidase superfamily protein
Chr5_+_15305847 0.31 AT5G38300.1
homeobox Hox-B3-like protein
Chr5_+_280674 0.31 AT5G01740.1
Nuclear transport factor 2 (NTF2) family protein
Chr1_-_19472582 0.31 AT1G52290.2
AT1G52290.1
Protein kinase superfamily protein
Chr1_-_20707071 0.31 AT1G55450.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_+_1041086 0.31 AT4G02360.1
transmembrane protein, putative (Protein of unknown function, DUF538)
Chr5_-_6413259 0.30 AT5G19110.1
AT5G19110.2
Eukaryotic aspartyl protease family protein
Chr1_-_18430497 0.30 AT1G49780.1
plant U-box 26
Chr4_+_6374734 0.30 AT4G10270.1
Wound-responsive family protein
Chr5_-_990630 0.30 AT5G03760.1
Nucleotide-diphospho-sugar transferases superfamily protein
Chr2_+_8940833 0.30 AT2G20750.2
AT2G20750.1
expansin B1
Chr5_+_26767599 0.30 AT5G67070.1
ralf-like 34
Chr2_-_17161293 0.29 AT2G41170.2
AT2G41170.1
AT2G41170.3
F-box family protein
Chr4_-_7780366 0.29 AT4G13370.1
serine/arginine repetitive matrix protein, putative (DUF936)
Chr4_-_6443554 0.29 AT4G10390.1
Protein kinase superfamily protein
Chr2_-_15797059 0.29 AT2G37660.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_+_2047634 0.29 AT1G06680.1
photosystem II subunit P-1
Chr4_-_16806830 0.29 AT4G35320.1
hypothetical protein
Chr5_-_1570609 0.29 AT5G05300.1
hypothetical protein
Chr1_+_2047886 0.29 AT1G06680.2
photosystem II subunit P-1
Chr2_+_14216771 0.29 AT2G33570.1
glycosyltransferase family protein (DUF23)
Chr5_-_21651626 0.29 AT5G53370.1
AT5G53370.2
pectin methylesterase PCR fragment F
Chr5_+_4826141 0.29 AT5G14920.1
AT5G14920.2
Gibberellin-regulated family protein
Chr5_+_9422879 0.29 AT5G26790.1
transmembrane protein
Chr1_-_8559066 0.28 AT1G24170.1
Nucleotide-diphospho-sugar transferases superfamily protein
Chr1_-_29239484 0.28 AT1G77760.1
nitrate reductase 1
Chr5_-_740319 0.28 AT5G03140.1
Concanavalin A-like lectin protein kinase family protein
Chr5_-_24987811 0.28 AT5G62210.1
Embryo-specific protein 3, (ATS3)
Chr2_+_17592038 0.28 AT2G42220.1
Rhodanese/Cell cycle control phosphatase superfamily protein
Chr5_+_2446669 0.28 AT5G07690.1
myb domain protein 29
Chr1_-_24139303 0.28 AT1G64980.3
AT1G64980.2
AT1G64980.1
Nucleotide-diphospho-sugar transferases superfamily protein
Chr4_+_15382777 0.28 AT4G31800.1
WRKY DNA-binding protein 18
Chr4_+_15383197 0.28 AT4G31800.3
WRKY DNA-binding protein 18
Chr1_+_12064323 0.28 AT1G33260.1
Protein kinase superfamily protein
Chr1_+_12064509 0.27 AT1G33260.2
Protein kinase superfamily protein
Chr3_+_9306776 0.27 AT3G25600.1
Calcium-binding EF-hand family protein
Chr4_-_17300367 0.27 AT4G36700.1
RmlC-like cupins superfamily protein
Chr4_-_17148496 0.27 AT4G36240.1
GATA transcription factor 7
Chr5_+_26172009 0.27 AT5G65470.1
O-fucosyltransferase family protein
Chr2_-_14222254 0.27 AT2G33580.1
Protein kinase superfamily protein
Chr2_-_13613573 0.27 AT2G31990.1
AT2G31990.3
AT2G31990.2
Exostosin family protein
Chr5_-_22232949 0.27 AT5G54720.1
Ankyrin repeat family protein
Chr3_-_19024352 0.27 AT3G51230.1
chalcone-flavanone isomerase family protein
Chr3_-_18594715 0.27 AT3G50140.1
AT3G50140.2
transmembrane protein, putative (DUF247)
Chr5_+_16236956 0.27 AT5G40540.1
AT5G40540.3
AT5G40540.2
AT5G40540.4
Protein kinase superfamily protein
Chr3_+_22745514 0.26 AT3G61470.1
photosystem I light harvesting complex protein
Chr5_+_6826365 0.26 AT5G20230.1
blue-copper-binding protein
Chr1_+_26814260 0.26 AT1G71100.1
Ribose 5-phosphate isomerase, type A protein
Chr4_-_17376279 0.25 AT4G36880.1
cysteine proteinase1
Chr3_-_18364956 0.25 AT3G49530.2
AT3G49530.1
NAC domain containing protein 62
Chr1_-_9458176 0.25 AT1G27210.1
ARM repeat superfamily protein
Chr2_+_2763449 0.25 AT2G06850.1
AT2G06850.2
xyloglucan endotransglucosylase/hydrolase 4
Chr5_-_19036938 0.25 AT5G46890.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr4_-_17181261 0.25 AT4G36360.2
beta-galactosidase 3
Chr1_-_7105869 0.25 AT1G20510.2
AT1G20510.3
AT1G20510.1
OPC-8:0 CoA ligase1
Chr3_+_19450506 0.25 AT3G52470.1
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr1_+_25018077 0.25 AT1G67035.2
AT1G67035.1
homeobox Hox-B3-like protein
Chr4_+_7042354 0.25 AT4G11660.1
winged-helix DNA-binding transcription factor family protein
Chr5_-_24932686 0.25 AT5G62070.1
IQ-domain 23
Chr4_-_17181466 0.25 AT4G36360.1
beta-galactosidase 3
Chr2_-_14216054 0.25 AT2G33560.1
AT2G33560.2
BUB1-related (BUB1: budding uninhibited by benzymidazol 1)
Chr1_-_3241863 0.24 AT1G09950.1
RESPONSE TO ABA AND SALT 1
Chr4_-_14883583 0.24 AT4G30440.1
UDP-D-glucuronate 4-epimerase 1
Chr1_-_28915102 0.24 AT1G76952.1
inflorescence deficient in abscission (IDA)-like 5
Chr5_-_26088277 0.24 AT5G65280.1
GCR2-like 1
Chr1_+_27521944 0.24 AT1G73190.1
Aquaporin-like superfamily protein
Chr1_+_95935 0.24 AT1G01225.1
NC domain-containing protein-like protein
Chr2_-_7594195 0.24 AT2G17480.1
Seven transmembrane MLO family protein
Chr5_-_17356706 0.24 AT5G43250.1
nuclear factor Y, subunit C13
Chr5_-_20307943 0.24 AT5G49920.1
Octicosapeptide/Phox/Bem1p family protein
Chr2_-_5051613 0.24 AT2G12462.1
sterile alpha motif (SAM) domain protein
Chr2_-_15474717 0.23 AT2G36870.2
AT2G36870.1
xyloglucan endotransglucosylase/hydrolase 32
Chr1_+_4274531 0.23 AT1G12550.1
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Chr1_-_4530222 0.23 AT1G13250.1
galacturonosyltransferase-like 3
Chr5_+_16815310 0.23 AT5G42050.1
DCD (Development and Cell Death) domain protein
Chr4_+_15101065 0.23 AT4G30996.1
ubiquitin-associated protein (DUF1068)
Chr5_-_1931782 0.23 AT5G06320.1
NDR1/HIN1-like 3
Chr4_+_15383633 0.23 AT4G31800.2
WRKY DNA-binding protein 18
Chr3_-_5845220 0.23 AT3G17130.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr3_+_22379740 0.23 AT3G60550.1
cyclin p3;2
Chr3_-_3677279 0.23 AT3G11650.1
NDR1/HIN1-like 2
Chr5_-_26970668 0.23 AT5G67640.1
hypothetical protein
Chr3_+_18249663 0.23 AT3G49220.2
AT3G49220.3
AT3G49220.1
Plant invertase/pectin methylesterase inhibitor superfamily
Chr1_+_22139170 0.23 AT1G60060.1
Serine/threonine-protein kinase WNK (With No Lysine)-like protein
Chr5_+_23883356 0.23 AT5G59180.1
DNA-directed RNA polymerase II
Chr1_+_18035967 0.23 AT1G48750.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr5_+_1952505 0.23 AT5G06390.1
FASCICLIN-like arabinogalactan protein 17 precursor
Chr3_-_20756690 0.23 AT3G55950.1
CRINKLY4 related 3
Chr1_+_25610723 0.22 AT1G68330.1
membrane-associated kinase regulator
Chr4_+_6049441 0.22 AT4G09570.1
calcium-dependent protein kinase 4
Chr2_-_8487996 0.22 AT2G19620.3
N-MYC downregulated-like 3
Chr5_-_21098959 0.22 AT5G51920.1
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Chr2_-_16237280 0.22 AT2G38870.1
Serine protease inhibitor, potato inhibitor I-type family protein
Chr5_+_18894378 0.22 AT5G46570.1
BR-signaling kinase 2
Chr3_-_19467455 0.22 AT3G52500.1
Eukaryotic aspartyl protease family protein
Chr3_+_17710160 0.22 AT3G47980.1
Integral membrane HPP family protein
Chr4_+_11545631 0.22 AT4G21740.1
transmembrane protein
Chr2_-_9062093 0.22 AT2G21140.1
proline-rich protein 2
Chr5_-_26087524 0.22 AT5G65280.2
GCR2-like 1
Chr1_+_20061405 0.22 AT1G53730.2
AT1G53730.1
STRUBBELIG-receptor family 6
Chr1_-_8961183 0.22 AT1G25510.1
Eukaryotic aspartyl protease family protein
Chr5_+_25191402 0.22 AT5G62720.1
Integral membrane HPP family protein
Chr1_-_1161982 0.22 AT1G04330.1
hypothetical protein
Chr1_+_8549191 0.22 AT1G24150.2
AT1G24150.1
formin homologue 4
Chr5_+_3509833 0.22 AT5G11060.1
homeobox protein knotted-1-like 4
Chr1_+_20499776 0.22 AT1G54960.1
AT1G54960.2
NPK1-related protein kinase 2
Chr5_+_3271767 0.22 AT5G10410.1
ENTH/ANTH/VHS superfamily protein
Chr2_-_8869229 0.22 AT2G20590.3
AT2G20590.2
AT2G20590.1
Reticulon family protein
Chr2_-_16545746 0.21 AT2G39700.1
expansin A4
Chr5_+_25881033 0.21 AT5G64740.1
cellulose synthase 6
Chr1_+_22139572 0.21 AT1G60060.2
Serine/threonine-protein kinase WNK (With No Lysine)-like protein
Chr3_-_18834834 0.21 AT3G50685.1
anti-muellerian hormone type-2 receptor
Chr3_+_5535124 0.21 AT3G16330.1
Avr9/Cf-9 rapidly elicited protein
Chr4_-_233652 0.21 AT4G00530.1
UvrABC system protein A
Chr5_+_25191860 0.21 AT5G62720.2
Integral membrane HPP family protein
Chr1_+_19173880 0.21 AT1G51700.1
DOF zinc finger protein 1
Chr1_+_4105223 0.21 AT1G12110.1
nitrate transporter 1.1
Chr5_+_526433 0.21 AT5G02430.1
Transducin/WD40 repeat-like superfamily protein
Chr5_+_26648897 0.21 AT5G66750.1
chromatin remodeling 1
Chr5_+_17864376 0.21 AT5G44350.1
ethylene-responsive nuclear protein-like protein
Chr1_-_6241510 0.21 AT1G18140.1
laccase 1
Chr1_+_21181585 0.21 AT1G56540.1
AT1G56540.2
Disease resistance protein (TIR-NBS-LRR class) family
Chr3_+_19569256 0.21 AT3G52800.1
AT3G52800.2
A20/AN1-like zinc finger family protein
Chr4_+_14368877 0.20 AT4G29140.1
MATE efflux family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G31060

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.


View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0033353 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
0.1 0.4 GO:0019586 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.1 0.3 GO:0060967 negative regulation of gene silencing by RNA(GO:0060967) negative regulation of RNA interference(GO:1900369)
0.1 0.5 GO:0006556 S-adenosylmethionine biosynthetic process(GO:0006556)
0.1 0.4 GO:0042759 long-chain fatty acid biosynthetic process(GO:0042759)
0.1 0.3 GO:0006097 glyoxylate cycle(GO:0006097)
0.1 0.4 GO:0010226 response to lithium ion(GO:0010226)
0.1 0.8 GO:0050691 regulation of defense response to virus by host(GO:0050691)
0.1 0.2 GO:0006883 cellular sodium ion homeostasis(GO:0006883) vacuolar sequestering(GO:0043181)
0.1 0.3 GO:0033306 phytol metabolic process(GO:0033306)
0.1 0.4 GO:0051574 positive regulation of histone H3-K9 methylation(GO:0051574)
0.1 0.4 GO:0005980 glycogen catabolic process(GO:0005980)
0.1 0.2 GO:1900151 regulation of nuclear-transcribed mRNA poly(A) tail shortening(GO:0060211) regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay(GO:1900151)
0.1 0.3 GO:0046208 spermine catabolic process(GO:0046208)
0.1 0.4 GO:0010438 cellular response to sulfur starvation(GO:0010438)
0.1 0.2 GO:0002698 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.1 0.2 GO:0032025 cell wall mannoprotein biosynthetic process(GO:0000032) mannoprotein metabolic process(GO:0006056) mannoprotein biosynthetic process(GO:0006057) cell wall glycoprotein biosynthetic process(GO:0031506) response to cobalt ion(GO:0032025)
0.1 0.7 GO:0009554 megasporogenesis(GO:0009554)
0.1 0.3 GO:0071323 cellular response to chitin(GO:0071323)
0.1 0.2 GO:0010289 homogalacturonan biosynthetic process(GO:0010289)
0.1 1.0 GO:0006949 syncytium formation(GO:0006949)
0.0 0.2 GO:0009143 nucleoside triphosphate catabolic process(GO:0009143)
0.0 0.1 GO:0042344 indole glucosinolate catabolic process(GO:0042344) indole-containing compound catabolic process(GO:0042436)
0.0 1.1 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.0 0.1 GO:0006011 UDP-glucose metabolic process(GO:0006011)
0.0 0.2 GO:0051754 meiotic sister chromatid cohesion, centromeric(GO:0051754)
0.0 0.5 GO:0080086 stamen filament development(GO:0080086)
0.0 0.4 GO:0009799 specification of symmetry(GO:0009799)
0.0 0.7 GO:0009969 xyloglucan biosynthetic process(GO:0009969)
0.0 1.7 GO:0045489 pectin biosynthetic process(GO:0045489)
0.0 0.3 GO:1902969 mitotic DNA replication(GO:1902969)
0.0 0.3 GO:0015689 molybdate ion transport(GO:0015689)
0.0 0.4 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.0 1.1 GO:0042026 protein refolding(GO:0042026)
0.0 0.8 GO:0046688 response to copper ion(GO:0046688)
0.0 0.1 GO:0043618 regulation of transcription from RNA polymerase II promoter in response to stress(GO:0043618)
0.0 0.4 GO:0010206 photosystem II repair(GO:0010206)
0.0 0.2 GO:0019408 dolichol biosynthetic process(GO:0019408)
0.0 0.3 GO:0009052 pentose-phosphate shunt, non-oxidative branch(GO:0009052)
0.0 0.3 GO:0007076 mitotic chromosome condensation(GO:0007076)
0.0 0.2 GO:0009094 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.0 0.2 GO:0006216 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.0 0.1 GO:0010253 UDP-rhamnose biosynthetic process(GO:0010253) UDP-rhamnose metabolic process(GO:0033478)
0.0 2.7 GO:0045490 pectin catabolic process(GO:0045490)
0.0 0.1 GO:0001887 selenium compound metabolic process(GO:0001887)
0.0 0.1 GO:0042149 cellular response to glucose starvation(GO:0042149)
0.0 0.5 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.0 0.1 GO:0050810 regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030)
0.0 0.2 GO:1904482 L-serine catabolic process(GO:0006565) glycine biosynthetic process from serine(GO:0019264) response to tetrahydrofolate(GO:1904481) cellular response to tetrahydrofolate(GO:1904482)
0.0 0.1 GO:0006809 nitric oxide biosynthetic process(GO:0006809)
0.0 0.1 GO:0015709 thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422)
0.0 0.1 GO:0000085 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
0.0 0.1 GO:0007142 male meiosis II(GO:0007142)
0.0 0.1 GO:0002188 translation reinitiation(GO:0002188)
0.0 0.2 GO:0006591 ornithine metabolic process(GO:0006591)
0.0 0.3 GO:0009423 chorismate biosynthetic process(GO:0009423)
0.0 0.2 GO:0043410 positive regulation of MAPK cascade(GO:0043410)
0.0 0.1 GO:1902457 negative regulation of stomatal opening(GO:1902457)
0.0 0.2 GO:0030261 chromosome condensation(GO:0030261)
0.0 0.2 GO:0006048 UDP-N-acetylglucosamine biosynthetic process(GO:0006048)
0.0 0.4 GO:0046341 CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341)
0.0 0.5 GO:0009645 response to low light intensity stimulus(GO:0009645)
0.0 0.1 GO:0051096 regulation of helicase activity(GO:0051095) positive regulation of helicase activity(GO:0051096)
0.0 0.1 GO:1900425 negative regulation of defense response to bacterium(GO:1900425)
0.0 0.1 GO:0018315 molybdenum incorporation into molybdenum-molybdopterin complex(GO:0018315) metal incorporation into metallo-molybdopterin complex(GO:0042040)
0.0 0.1 GO:0006569 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.0 0.1 GO:0045730 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.0 0.1 GO:0080001 mucilage extrusion from seed coat(GO:0080001)
0.0 0.1 GO:0033477 S-methylmethionine metabolic process(GO:0033477) S-methylmethionine cycle(GO:0033528)
0.0 0.2 GO:1901141 regulation of lignin biosynthetic process(GO:1901141)
0.0 0.1 GO:0019401 alditol biosynthetic process(GO:0019401)
0.0 0.1 GO:0010344 seed oilbody biogenesis(GO:0010344)
0.0 0.1 GO:0010047 fruit dehiscence(GO:0010047)
0.0 0.2 GO:1990937 xylan acetylation(GO:1990937)
0.0 0.1 GO:0032979 protein insertion into membrane from inner side(GO:0032978) protein insertion into mitochondrial membrane from inner side(GO:0032979) protein insertion into mitochondrial membrane(GO:0051204)
0.0 0.1 GO:0006554 lysine catabolic process(GO:0006554) L-lysine catabolic process to acetyl-CoA(GO:0019474) L-lysine catabolic process(GO:0019477) L-lysine catabolic process to acetyl-CoA via saccharopine(GO:0033512) L-lysine metabolic process(GO:0046440)
0.0 0.5 GO:0043622 cortical microtubule organization(GO:0043622)
0.0 0.1 GO:0009720 detection of hormone stimulus(GO:0009720) detection of endogenous stimulus(GO:0009726)
0.0 0.1 GO:0007187 G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger(GO:0007187) adenylate cyclase-modulating G-protein coupled receptor signaling pathway(GO:0007188)
0.0 0.2 GO:0009957 epidermal cell fate specification(GO:0009957)
0.0 0.1 GO:1990481 mRNA pseudouridine synthesis(GO:1990481)
0.0 1.1 GO:0007267 cell-cell signaling(GO:0007267)
0.0 0.2 GO:0010440 stomatal lineage progression(GO:0010440)
0.0 0.1 GO:0045039 protein import into mitochondrial inner membrane(GO:0045039)
0.0 0.2 GO:0010192 mucilage biosynthetic process(GO:0010192)
0.0 0.2 GO:0042753 positive regulation of circadian rhythm(GO:0042753)
0.0 0.0 GO:2000692 negative regulation of seed maturation(GO:2000692)
0.0 1.1 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.0 0.1 GO:0010115 regulation of abscisic acid biosynthetic process(GO:0010115)
0.0 0.4 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.0 0.1 GO:0009558 embryo sac cellularization(GO:0009558)
0.0 0.1 GO:0010338 leaf formation(GO:0010338)
0.0 0.1 GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864)
0.0 0.1 GO:0005513 detection of calcium ion(GO:0005513)
0.0 0.1 GO:0009099 valine biosynthetic process(GO:0009099)
0.0 0.3 GO:0010112 regulation of systemic acquired resistance(GO:0010112)
0.0 0.2 GO:0010227 floral organ abscission(GO:0010227)
0.0 0.2 GO:0000266 mitochondrial fission(GO:0000266)
0.0 0.1 GO:0030308 negative regulation of cell growth(GO:0030308)
0.0 0.3 GO:0009292 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.0 0.1 GO:0043155 photoinhibition(GO:0010205) negative regulation of photosynthesis, light reaction(GO:0043155)
0.0 0.6 GO:0006635 fatty acid beta-oxidation(GO:0006635)
0.0 0.1 GO:0051865 protein autoubiquitination(GO:0051865)
0.0 0.0 GO:0006571 tyrosine biosynthetic process(GO:0006571)
0.0 0.2 GO:0006465 signal peptide processing(GO:0006465)
0.0 0.2 GO:0009768 photosynthesis, light harvesting in photosystem I(GO:0009768)
0.0 0.2 GO:2000032 regulation of morphogenesis of a branching structure(GO:0060688) regulation of secondary shoot formation(GO:2000032)
0.0 0.2 GO:0046620 regulation of organ growth(GO:0046620)
0.0 0.1 GO:0052324 plant-type cell wall cellulose biosynthetic process(GO:0052324)
0.0 0.4 GO:0010025 wax biosynthetic process(GO:0010025)
0.0 0.2 GO:0052482 defense response by cell wall thickening(GO:0052482)
0.0 0.0 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.0 0.1 GO:0009688 abscisic acid biosynthetic process(GO:0009688) apocarotenoid biosynthetic process(GO:0043289) tertiary alcohol biosynthetic process(GO:1902645)
0.0 0.1 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.9 GO:0016363 nuclear matrix(GO:0016363)
0.1 0.3 GO:0009514 glyoxysome(GO:0009514)
0.1 0.4 GO:0005640 nuclear outer membrane(GO:0005640)
0.1 0.2 GO:0010330 cellulose synthase complex(GO:0010330)
0.0 0.2 GO:0005828 kinetochore microtubule(GO:0005828)
0.0 0.1 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)
0.0 5.4 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.0 1.5 GO:0009543 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.0 2.8 GO:0000138 Golgi trans cisterna(GO:0000138)
0.0 1.7 GO:0005797 Golgi medial cisterna(GO:0005797)
0.0 0.2 GO:0000796 condensin complex(GO:0000796)
0.0 0.3 GO:0042555 MCM complex(GO:0042555)
0.0 0.4 GO:0044815 DNA packaging complex(GO:0044815)
0.0 0.1 GO:0042645 mitochondrial nucleoid(GO:0042645)
0.0 0.1 GO:0017053 transcriptional repressor complex(GO:0017053)
0.0 0.1 GO:0001405 presequence translocase-associated import motor(GO:0001405)
0.0 0.3 GO:0009522 photosystem I(GO:0009522)
0.0 0.1 GO:0000812 Swr1 complex(GO:0000812)
0.0 0.1 GO:0005832 chaperonin-containing T-complex(GO:0005832)
0.0 0.5 GO:0000137 Golgi cis cisterna(GO:0000137)
0.0 0.1 GO:0005834 heterotrimeric G-protein complex(GO:0005834)
0.0 0.5 GO:0010319 stromule(GO:0010319)
0.0 0.1 GO:0048188 Set1C/COMPASS complex(GO:0048188)
0.0 0.9 GO:0010008 endosome membrane(GO:0010008)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0016802 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
0.1 0.5 GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives(GO:0016856)
0.1 0.3 GO:0052901 spermine:oxygen oxidoreductase (spermidine-forming) activity(GO:0052901)
0.1 0.5 GO:0033843 xyloglucan 6-xylosyltransferase activity(GO:0033843)
0.1 0.4 GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
0.1 0.5 GO:0004478 methionine adenosyltransferase activity(GO:0004478)
0.1 0.6 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.1 0.4 GO:0016165 linoleate 13S-lipoxygenase activity(GO:0016165)
0.1 0.4 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.1 0.3 GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity(GO:0003849)
0.1 0.2 GO:0016618 hydroxypyruvate reductase activity(GO:0016618)
0.1 1.0 GO:0002020 protease binding(GO:0002020)
0.1 0.1 GO:0019187 beta-1,4-mannosyltransferase activity(GO:0019187) mannan synthase activity(GO:0051753)
0.1 0.3 GO:0031957 very long-chain fatty acid-CoA ligase activity(GO:0031957)
0.1 0.3 GO:0004751 ribose-5-phosphate isomerase activity(GO:0004751)
0.1 0.2 GO:0004476 mannose-6-phosphate isomerase activity(GO:0004476)
0.1 0.7 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 1.4 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 0.2 GO:0036218 dTTP diphosphatase activity(GO:0036218)
0.0 0.1 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.0 0.3 GO:0008022 protein C-terminus binding(GO:0008022)
0.0 0.1 GO:0047209 coniferyl-alcohol glucosyltransferase activity(GO:0047209)
0.0 0.1 GO:0010242 oxygen evolving activity(GO:0010242)
0.0 0.1 GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity(GO:0003983)
0.0 0.1 GO:0043140 ATP-dependent 3'-5' DNA helicase activity(GO:0043140) single-stranded DNA-dependent ATP-dependent 3'-5' DNA helicase activity(GO:1990518)
0.0 0.2 GO:0034722 gamma-glutamyl-peptidase activity(GO:0034722)
0.0 0.8 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.0 0.3 GO:0001671 ATPase activator activity(GO:0001671)
0.0 0.1 GO:0003962 cystathionine gamma-synthase activity(GO:0003962)
0.0 0.3 GO:0004366 glycerol-3-phosphate O-acyltransferase activity(GO:0004366)
0.0 0.0 GO:0004165 dodecenoyl-CoA delta-isomerase activity(GO:0004165)
0.0 0.3 GO:0015098 molybdate ion transmembrane transporter activity(GO:0015098)
0.0 0.5 GO:0004709 MAP kinase kinase kinase activity(GO:0004709)
0.0 0.2 GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity(GO:0003977)
0.0 1.0 GO:0008810 cellulase activity(GO:0008810)
0.0 0.2 GO:0070905 glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905)
0.0 0.2 GO:0045547 dehydrodolichyl diphosphate synthase activity(GO:0045547)
0.0 0.2 GO:0047769 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.0 0.1 GO:0045430 chalcone isomerase activity(GO:0045430)
0.0 0.1 GO:0004181 metallocarboxypeptidase activity(GO:0004181)
0.0 0.2 GO:0031492 nucleosomal DNA binding(GO:0031492)
0.0 0.7 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 0.9 GO:0008266 poly(U) RNA binding(GO:0008266)
0.0 0.2 GO:0008705 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085)
0.0 0.2 GO:0004126 cytidine deaminase activity(GO:0004126)
0.0 2.3 GO:0030599 pectinesterase activity(GO:0030599)
0.0 0.1 GO:0004679 AMP-activated protein kinase activity(GO:0004679)
0.0 0.4 GO:0016833 oxo-acid-lyase activity(GO:0016833)
0.0 0.1 GO:0015116 sulfate transmembrane transporter activity(GO:0015116) thiosulfate transmembrane transporter activity(GO:0015117)
0.0 0.1 GO:0047912 galacturonokinase activity(GO:0047912)
0.0 0.1 GO:0008177 succinate dehydrogenase (ubiquinone) activity(GO:0008177)
0.0 0.2 GO:0008121 ubiquinol-cytochrome-c reductase activity(GO:0008121) oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor(GO:0016681)
0.0 0.3 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.0 0.8 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.0 0.4 GO:0015248 sterol transporter activity(GO:0015248)
0.0 0.3 GO:0008061 chitin binding(GO:0008061)
0.0 0.1 GO:0001664 G-protein coupled receptor binding(GO:0001664) G-protein beta/gamma-subunit complex binding(GO:0031683)
0.0 0.8 GO:0045735 nutrient reservoir activity(GO:0045735)
0.0 0.3 GO:0070628 proteasome binding(GO:0070628)
0.0 0.2 GO:0003885 D-arabinono-1,4-lactone oxidase activity(GO:0003885)
0.0 0.2 GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682)
0.0 0.1 GO:0016985 mannan endo-1,4-beta-mannosidase activity(GO:0016985)
0.0 0.5 GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 0.7 GO:0016759 cellulose synthase activity(GO:0016759)
0.0 0.1 GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity(GO:0008898) betaine-homocysteine S-methyltransferase activity(GO:0047150)
0.0 0.5 GO:0004565 beta-galactosidase activity(GO:0004565)
0.0 0.1 GO:0035252 UDP-xylosyltransferase activity(GO:0035252)
0.0 0.1 GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity(GO:0004149) succinyltransferase activity(GO:0016748) S-succinyltransferase activity(GO:0016751)
0.0 0.5 GO:0005179 hormone activity(GO:0005179)
0.0 2.3 GO:0009055 electron carrier activity(GO:0009055)
0.0 0.2 GO:0016273 arginine N-methyltransferase activity(GO:0016273) protein-arginine N-methyltransferase activity(GO:0016274)
0.0 0.4 GO:0016168 chlorophyll binding(GO:0016168)
0.0 0.3 GO:0004568 chitinase activity(GO:0004568)
0.0 0.2 GO:0004144 diacylglycerol O-acyltransferase activity(GO:0004144)
0.0 0.2 GO:0008420 CTD phosphatase activity(GO:0008420)
0.0 0.2 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.0 0.1 GO:0052654 L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656)
0.0 0.2 GO:0016688 L-ascorbate peroxidase activity(GO:0016688)
0.0 0.1 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.0 0.3 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.0 0.2 GO:0031369 translation initiation factor binding(GO:0031369)
0.0 0.1 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.0 0.1 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.0 0.1 GO:0004792 thiosulfate sulfurtransferase activity(GO:0004792)
0.0 0.1 GO:0009378 four-way junction helicase activity(GO:0009378)
0.0 0.1 GO:0030151 molybdenum ion binding(GO:0030151)
0.0 0.1 GO:0001872 (1->3)-beta-D-glucan binding(GO:0001872)
0.0 0.1 GO:0000340 RNA 7-methylguanosine cap binding(GO:0000340)
0.0 0.7 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.0 0.1 GO:0070180 large ribosomal subunit rRNA binding(GO:0070180)
0.0 0.1 GO:0043495 protein anchor(GO:0043495)
0.0 0.1 GO:0010313 phytochrome binding(GO:0010313)
0.0 0.1 GO:0016531 copper chaperone activity(GO:0016531)
0.0 0.2 GO:0008143 poly(A) binding(GO:0008143)
0.0 0.0 GO:0015930 glutamate synthase activity(GO:0015930) glutamate synthase (NADH) activity(GO:0016040) glutamate synthase activity, NAD(P)H as acceptor(GO:0045181)
0.0 0.0 GO:0042895 tetracycline transporter activity(GO:0008493) toxin transporter activity(GO:0019534) antibiotic transporter activity(GO:0042895)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 ST WNT BETA CATENIN PATHWAY Wnt/beta-catenin Pathway
0.0 0.1 PID CMYB PATHWAY C-MYB transcription factor network
0.0 0.1 PID AP1 PATHWAY AP-1 transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
0.0 0.3 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines
0.0 0.2 REACTOME FORMATION OF INCISION COMPLEX IN GG NER Genes involved in Formation of incision complex in GG-NER
0.0 0.1 REACTOME INNATE IMMUNE SYSTEM Genes involved in Innate Immune System
0.0 0.1 REACTOME MITOCHONDRIAL PROTEIN IMPORT Genes involved in Mitochondrial Protein Import
0.0 0.2 REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism