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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G31060
Z-value: 0.79
Transcription factors associated with AT4G31060
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G31060
|
AT4G31060 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT4G31060 | arTal_v1_Chr4_+_15116148_15116148 | -0.05 | 8.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_17606924_17607050 Show fit | 0.63 |
AT4G37450.1
AT4G37450.2 |
arabinogalactan protein 18 |
|
| arTal_v1_Chr5_+_16768935_16768935 Show fit | 0.61 |
AT5G41900.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr3_-_8589754_8589754 Show fit | 0.60 |
AT3G23810.1
|
S-adenosyl-l-homocysteine (SAH) hydrolase 2 |
|
| arTal_v1_Chr3_-_565801_565801 Show fit | 0.59 |
AT3G02640.1
|
transmembrane protein |
|
| arTal_v1_Chr1_-_1307973_1307973 Show fit | 0.56 |
AT1G04680.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr2_-_17992047_17992047 Show fit | 0.53 |
AT2G43290.1
|
Calcium-binding EF-hand family protein |
|
| arTal_v1_Chr4_+_15401640_15401640 Show fit | 0.51 |
AT4G31840.1
|
early nodulin-like protein 15 |
|
| arTal_v1_Chr1_-_8501542_8501542 Show fit | 0.51 |
AT1G24020.1
|
MLP-like protein 423 |
|
| arTal_v1_Chr4_+_1032350_1032350 Show fit | 0.51 |
AT4G02330.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr1_-_8502065_8502065 Show fit | 0.51 |
AT1G24020.2
|
MLP-like protein 423 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G31060
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.7 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.0 | 1.7 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.0 | 1.1 | GO:2000012 | regulation of auxin polar transport(GO:2000012) |
| 0.0 | 1.1 | GO:0042026 | protein refolding(GO:0042026) |
| 0.0 | 1.1 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.0 | 1.1 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.1 | 1.0 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.1 | 0.8 | GO:0050691 | regulation of defense response to virus by host(GO:0050691) |
| 0.0 | 0.8 | GO:0046688 | response to copper ion(GO:0046688) |
| 0.1 | 0.7 | GO:0009554 | megasporogenesis(GO:0009554) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.4 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 2.8 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 1.7 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.0 | 1.5 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.1 | 0.9 | GO:0016363 | nuclear matrix(GO:0016363) |
| 0.0 | 0.9 | GO:0010008 | endosome membrane(GO:0010008) |
| 0.0 | 0.5 | GO:0000137 | Golgi cis cisterna(GO:0000137) |
| 0.0 | 0.5 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 0.4 | GO:0005640 | nuclear outer membrane(GO:0005640) |
| 0.0 | 0.4 | GO:0044815 | DNA packaging complex(GO:0044815) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.3 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.0 | 2.3 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.0 | 1.4 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.1 | 1.0 | GO:0002020 | protease binding(GO:0002020) |
| 0.0 | 1.0 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.0 | 0.9 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.0 | 0.8 | GO:0004864 | protein phosphatase inhibitor activity(GO:0004864) |
| 0.0 | 0.8 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 0.8 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
| 0.1 | 0.7 | GO:0016207 | 4-coumarate-CoA ligase activity(GO:0016207) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.1 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.0 | 0.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.0 | 0.3 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.2 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.0 | 0.2 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.0 | 0.1 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.1 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |