GSE130291:vernalization in Arabidopsis thaliana
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT4G29230
|
AT4G29230 | NAC domain containing protein 75 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
NAC075 | arTal_v1_Chr4_+_14409772_14409871 | -0.33 | 2.5e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr4_+_13128394_13128394 Show fit | 1.56 |
AT4G25810.1
|
xyloglucan endotransglycosylase 6 |
|
arTal_v1_Chr4_-_14827211_14827211 Show fit | 1.38 |
AT4G30280.1
|
xyloglucan endotransglucosylase/hydrolase 18 |
|
arTal_v1_Chr2_+_19568464_19568464 Show fit | 1.06 |
AT2G47770.1
|
TSPO(outer membrane tryptophan-rich sensory protein)-like protein |
|
arTal_v1_Chr5_-_17331646_17331646 Show fit | 1.05 |
AT5G43170.1
|
zinc-finger protein 3 |
|
arTal_v1_Chr1_-_27940309_27940369 Show fit | 0.94 |
AT1G74310.1
AT1G74310.2 |
heat shock protein 101 |
|
arTal_v1_Chr4_-_9754161_9754161 Show fit | 0.92 |
AT4G17490.1
|
ethylene responsive element binding factor 6 |
|
arTal_v1_Chr1_-_59215_59215 Show fit | 0.90 |
AT1G01120.1
|
3-ketoacyl-CoA synthase 1 |
|
arTal_v1_Chr1_-_749034_749034 Show fit | 0.84 |
AT1G03106.1
|
hypothetical protein |
|
arTal_v1_Chr2_-_8088302_8088302 Show fit | 0.81 |
AT2G18650.1
|
RING/U-box superfamily protein |
|
arTal_v1_Chr4_+_13275200_13275200 Show fit | 0.81 |
AT4G26200.1
|
1-amino-cyclopropane-1-carboxylate synthase 7 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.2 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
0.1 | 2.5 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
0.0 | 2.1 | GO:0010200 | response to chitin(GO:0010200) |
0.3 | 1.9 | GO:0010581 | regulation of starch biosynthetic process(GO:0010581) |
0.0 | 1.7 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
0.1 | 1.6 | GO:0030497 | fatty acid elongation(GO:0030497) |
0.0 | 1.6 | GO:0019722 | calcium-mediated signaling(GO:0019722) |
0.0 | 1.5 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
0.1 | 1.4 | GO:0007264 | small GTPase mediated signal transduction(GO:0007264) |
0.0 | 1.3 | GO:0009932 | cell tip growth(GO:0009932) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.0 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.0 | 3.4 | GO:0009505 | plant-type cell wall(GO:0009505) |
0.0 | 1.4 | GO:0042995 | cell projection(GO:0042995) |
0.4 | 1.2 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
0.0 | 1.2 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.0 | 1.0 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
0.0 | 0.7 | GO:0005880 | nuclear microtubule(GO:0005880) |
0.0 | 0.6 | GO:0005762 | mitochondrial large ribosomal subunit(GO:0005762) |
0.0 | 0.6 | GO:0000145 | exocyst(GO:0000145) |
0.0 | 0.6 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 2.5 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
0.1 | 2.4 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
0.1 | 2.3 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
0.5 | 1.9 | GO:0080042 | ADP-glucose pyrophosphohydrolase activity(GO:0080042) |
0.1 | 1.9 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
0.1 | 1.6 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
0.1 | 1.3 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
0.2 | 1.2 | GO:0004535 | poly(A)-specific ribonuclease activity(GO:0004535) |
0.1 | 1.0 | GO:0016621 | cinnamoyl-CoA reductase activity(GO:0016621) |
0.1 | 0.9 | GO:0009922 | fatty acid elongase activity(GO:0009922) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.4 | PID P73PATHWAY | p73 transcription factor network |
0.1 | 0.3 | PID AURORA A PATHWAY | Aurora A signaling |
0.1 | 0.3 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.1 | 0.2 | PID ARF 3PATHWAY | Arf1 pathway |
0.1 | 0.2 | PID AVB3 OPN PATHWAY | Osteopontin-mediated events |
0.0 | 0.2 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.0 | 0.1 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.3 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
0.1 | 0.3 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
0.1 | 0.3 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
0.0 | 0.3 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
0.1 | 0.2 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
0.1 | 0.2 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
0.0 | 0.2 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
0.0 | 0.2 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
0.0 | 0.2 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
0.0 | 0.2 | REACTOME SIGNALING BY PDGF | Genes involved in Signaling by PDGF |