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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G28500
Z-value: 0.55
Transcription factors associated with AT4G28500
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G28500
|
AT4G28500 | NAC domain containing protein 73 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC073 | arTal_v1_Chr4_+_14082660_14082660 | -0.34 | 2.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_27940309_27940369 Show fit | 0.68 |
AT1G74310.1
AT1G74310.2 |
heat shock protein 101 |
|
| arTal_v1_Chr3_+_18941925_18941925 Show fit | 0.56 |
AT3G50980.1
|
dehydrin xero 1 |
|
| arTal_v1_Chr2_-_19512728_19512728 Show fit | 0.51 |
AT2G47560.1
|
RING/U-box superfamily protein |
|
| arTal_v1_Chr1_+_10371675_10371675 Show fit | 0.47 |
AT1G29660.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr5_+_25721733_25721733 Show fit | 0.47 |
AT5G64310.1
|
arabinogalactan protein 1 |
|
| arTal_v1_Chr5_+_18905258_18905272 Show fit | 0.47 |
AT5G46590.1
AT5G46590.2 |
NAC domain containing protein 96 |
|
| arTal_v1_Chr3_-_3003454_3003454 Show fit | 0.43 |
AT3G09780.1
|
CRINKLY4 related 1 |
|
| arTal_v1_Chr1_-_20015038_20015038 Show fit | 0.43 |
AT1G53625.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_6038692_6038698 Show fit | 0.42 |
AT1G17560.2
AT1G17560.1 |
Ribosomal protein L14p/L23e family protein |
|
| arTal_v1_Chr5_-_21207697_21207716 Show fit | 0.42 |
AT5G52220.1
AT5G52220.2 |
chromosome transmission fidelity-like protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G28500
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.6 | GO:0045727 | positive regulation of translation(GO:0045727) |
| 0.0 | 0.5 | GO:0009789 | positive regulation of abscisic acid-activated signaling pathway(GO:0009789) |
| 0.1 | 0.4 | GO:0010501 | RNA secondary structure unwinding(GO:0010501) |
| 0.1 | 0.4 | GO:0009759 | indole glucosinolate biosynthetic process(GO:0009759) |
| 0.0 | 0.4 | GO:0080060 | integument development(GO:0080060) |
| 0.0 | 0.4 | GO:0010158 | abaxial cell fate specification(GO:0010158) |
| 0.0 | 0.4 | GO:0007064 | mitotic sister chromatid cohesion(GO:0007064) |
| 0.0 | 0.4 | GO:0042761 | very long-chain fatty acid biosynthetic process(GO:0042761) |
| 0.1 | 0.3 | GO:0071258 | cellular response to gravity(GO:0071258) |
| 0.0 | 0.3 | GO:0051365 | cellular response to potassium ion starvation(GO:0051365) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | GO:0031390 | Ctf18 RFC-like complex(GO:0031390) |
| 0.0 | 0.4 | GO:0005762 | mitochondrial large ribosomal subunit(GO:0005762) |
| 0.0 | 0.3 | GO:0000312 | plastid small ribosomal subunit(GO:0000312) |
| 0.0 | 0.3 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.0 | 0.2 | GO:0009531 | secondary cell wall(GO:0009531) |
| 0.0 | 0.1 | GO:0031314 | extrinsic component of mitochondrial inner membrane(GO:0031314) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | GO:0016621 | cinnamoyl-CoA reductase activity(GO:0016621) |
| 0.0 | 0.5 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
| 0.0 | 0.4 | GO:0070180 | large ribosomal subunit rRNA binding(GO:0070180) |
| 0.1 | 0.3 | GO:0003852 | 2-isopropylmalate synthase activity(GO:0003852) |
| 0.1 | 0.3 | GO:0005354 | galactose transmembrane transporter activity(GO:0005354) |
| 0.0 | 0.3 | GO:0005089 | Rho guanyl-nucleotide exchange factor activity(GO:0005089) |
| 0.0 | 0.3 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 0.3 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 0.1 | 0.2 | GO:0015185 | L-alanine transmembrane transporter activity(GO:0015180) gamma-aminobutyric acid transmembrane transporter activity(GO:0015185) alanine transmembrane transporter activity(GO:0022858) |
| 0.0 | 0.2 | GO:0051980 | iron chelate transmembrane transporter activity(GO:0015603) iron-nicotianamine transmembrane transporter activity(GO:0051980) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.2 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.3 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.1 | 0.2 | REACTOME REGULATION OF HYPOXIA INDUCIBLE FACTOR HIF BY OXYGEN | Genes involved in Regulation of Hypoxia-inducible Factor (HIF) by Oxygen |
| 0.1 | 0.2 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |