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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G26640
Z-value: 1.07
Transcription factors associated with AT4G26640
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G26640
|
AT4G26640 | WRKY family transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY20 | arTal_v1_Chr4_-_13441884_13441884 | -0.87 | 5.8e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 2.75 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr1_-_8075037_8075037 Show fit | 2.40 |
AT1G22810.1
|
Integrase-type DNA-binding superfamily protein |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 2.22 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_-_4975705_4975705 Show fit | 2.08 |
AT1G14540.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr1_-_27569823_27569823 Show fit | 1.98 |
AT1G73330.1
|
drought-repressed 4 |
|
| arTal_v1_Chr5_-_19040456_19040456 Show fit | 1.98 |
AT5G46900.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr2_+_8097420_8097420 Show fit | 1.55 |
AT2G18690.2
AT2G18690.1 |
transmembrane protein |
|
| arTal_v1_Chr5_-_14566439_14566439 Show fit | 1.52 |
AT5G36925.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_27998821_27998821 Show fit | 1.48 |
AT1G74500.1
|
activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 |
|
| arTal_v1_Chr5_+_4335595_4335595 Show fit | 1.47 |
AT5G13490.2
|
ADP/ATP carrier 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G26640
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 10.4 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.0 | 3.8 | GO:0010200 | response to chitin(GO:0010200) |
| 0.2 | 3.6 | GO:0015865 | purine nucleotide transport(GO:0015865) |
| 0.1 | 2.7 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.0 | 2.7 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.0 | 2.7 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.2 | 2.1 | GO:0009939 | positive regulation of gibberellic acid mediated signaling pathway(GO:0009939) |
| 0.2 | 2.0 | GO:0010466 | negative regulation of peptidase activity(GO:0010466) regulation of peptidase activity(GO:0052547) |
| 0.0 | 1.9 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.0 | 1.7 | GO:0042546 | cell wall biogenesis(GO:0042546) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 26.6 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 3.6 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 3.4 | GO:0005740 | mitochondrial envelope(GO:0005740) |
| 0.1 | 1.9 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 1.9 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 1.4 | GO:0005811 | lipid particle(GO:0005811) |
| 0.0 | 1.3 | GO:0005615 | extracellular space(GO:0005615) extracellular region part(GO:0044421) |
| 0.0 | 1.0 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 0.9 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 0.6 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.6 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.0 | 3.5 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.1 | 3.0 | GO:0030414 | peptidase inhibitor activity(GO:0030414) |
| 0.3 | 2.9 | GO:0005471 | ATP:ADP antiporter activity(GO:0005471) |
| 0.1 | 2.7 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.3 | 2.6 | GO:0004715 | non-membrane spanning protein tyrosine kinase activity(GO:0004715) |
| 0.0 | 2.6 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 2.1 | GO:0004724 | magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724) |
| 0.0 | 1.8 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.1 | 1.6 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.6 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 0.6 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.0 | 0.5 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.1 | 0.4 | PID P73PATHWAY | p73 transcription factor network |
| 0.0 | 0.2 | PID ATR PATHWAY | ATR signaling pathway |
| 0.0 | 0.1 | PID IL12 2PATHWAY | IL12-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.9 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.1 | 0.6 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.1 | 0.5 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.1 | 0.4 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.1 | 0.3 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.0 | 0.3 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.0 | 0.1 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.0 | 0.1 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.1 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |