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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G26030
Z-value: 0.99
Transcription factors associated with AT4G26030
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G26030
|
AT4G26030 | C2H2-like zinc finger protein |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_19807853_19807853 Show fit | 1.36 |
AT5G48850.1
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
|
| arTal_v1_Chr5_-_7828724_7828724 Show fit | 1.06 |
AT5G23240.1
|
DNAJ heat shock N-terminal domain-containing protein |
|
| arTal_v1_Chr1_-_1337849_1337849 Show fit | 0.99 |
AT1G04770.1
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
|
| arTal_v1_Chr5_-_9164816_9164884 Show fit | 0.95 |
AT5G26220.2
AT5G26220.1 |
ChaC-like family protein |
|
| arTal_v1_Chr4_-_12745352_12745352 Show fit | 0.92 |
AT4G24700.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_9829261_9829261 Show fit | 0.86 |
AT1G28135.1
|
hypothetical protein |
|
| arTal_v1_Chr4_+_2189515_2189515 Show fit | 0.81 |
AT4G04410.1
|
|
|
| arTal_v1_Chr2_+_16216752_16216752 Show fit | 0.75 |
AT2G38800.1
|
Plant calmodulin-binding protein-like protein |
|
| arTal_v1_Chr5_-_6850237_6850237 Show fit | 0.74 |
AT5G20280.1
|
sucrose phosphate synthase 1F |
|
| arTal_v1_Chr1_+_18132545_18132545 Show fit | 0.73 |
AT1G49010.1
|
Duplicated homeodomain-like superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G26030
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.1 | GO:0006357 | regulation of transcription from RNA polymerase II promoter(GO:0006357) |
| 0.1 | 3.0 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.0 | 2.9 | GO:0046777 | protein autophosphorylation(GO:0046777) |
| 0.1 | 2.8 | GO:0009902 | chloroplast relocation(GO:0009902) establishment of plastid localization(GO:0051667) |
| 0.2 | 1.8 | GO:0010188 | response to microbial phytotoxin(GO:0010188) |
| 0.1 | 1.8 | GO:0045037 | protein import into chloroplast stroma(GO:0045037) |
| 0.1 | 1.7 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 0.1 | 1.7 | GO:0000413 | protein peptidyl-prolyl isomerization(GO:0000413) |
| 0.3 | 1.6 | GO:0031116 | positive regulation of microtubule polymerization(GO:0031116) |
| 0.0 | 1.6 | GO:0048510 | regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 12.7 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 12.0 | GO:0031976 | plastid thylakoid(GO:0031976) |
| 0.0 | 5.5 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.1 | 3.6 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 3.3 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 2.1 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.0 | 1.8 | GO:0016592 | mediator complex(GO:0016592) |
| 0.0 | 1.7 | GO:0005667 | transcription factor complex(GO:0005667) |
| 0.1 | 1.6 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
| 0.1 | 1.6 | GO:0005771 | multivesicular body(GO:0005771) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.5 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 3.5 | GO:0003713 | transcription coactivator activity(GO:0003713) |
| 0.1 | 3.1 | GO:0004176 | ATP-dependent peptidase activity(GO:0004176) |
| 0.0 | 2.6 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 0.0 | 2.4 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.1 | 2.3 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.3 | 2.1 | GO:0016781 | phosphotransferase activity, paired acceptors(GO:0016781) |
| 0.1 | 1.8 | GO:0003887 | DNA-directed DNA polymerase activity(GO:0003887) |
| 0.0 | 1.7 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.0 | 1.6 | GO:0003682 | chromatin binding(GO:0003682) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.1 | 0.3 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.0 | 0.3 | PID E2F PATHWAY | E2F transcription factor network |
| 0.0 | 0.3 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.2 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.1 | 0.2 | PID REELIN PATHWAY | Reelin signaling pathway |
| 0.1 | 0.2 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.1 | 0.2 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
| 0.1 | 0.1 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
| 0.0 | 0.1 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.9 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.1 | 0.6 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.0 | 0.6 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.2 | 0.5 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.2 | 0.5 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.1 | 0.3 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.3 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.0 | 0.3 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.0 | 0.3 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.0 | 0.2 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |