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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G25490
Z-value: 0.68
Transcription factors associated with AT4G25490
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G25490
|
AT4G25490 | C-repeat/DRE binding factor 1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| CBF1 | arTal_v1_Chr4_-_13022996_13022996 | 0.25 | 3.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_6840281_6840281 Show fit | 0.69 |
AT3G19680.1
|
hypothetical protein (DUF1005) |
|
| arTal_v1_Chr1_+_6130025_6130025 Show fit | 0.68 |
AT1G17810.1
|
beta-tonoplast intrinsic protein |
|
| arTal_v1_Chr1_+_18542061_18542061 Show fit | 0.58 |
AT1G50040.1
|
formin-like protein, putative (DUF1005) |
|
| arTal_v1_Chr1_+_1244947_1244947 Show fit | 0.54 |
AT1G04560.1
|
AWPM-19-like family protein |
|
| arTal_v1_Chr1_-_8559066_8559066 Show fit | 0.54 |
AT1G24170.1
|
Nucleotide-diphospho-sugar transferases superfamily protein |
|
| arTal_v1_Chr3_+_20354351_20354351 Show fit | 0.52 |
AT3G54940.3
AT3G54940.2 |
Papain family cysteine protease |
|
| arTal_v1_Chr1_-_20458631_20458631 Show fit | 0.51 |
AT1G54860.1
|
Glycoprotein membrane precursor GPI-anchored |
|
| arTal_v1_Chr1_+_3777236_3777236 Show fit | 0.51 |
AT1G11260.1
|
sugar transporter 1 |
|
| arTal_v1_Chr3_-_7656053_7656053 Show fit | 0.50 |
AT3G21720.1
|
isocitrate lyase |
|
| arTal_v1_Chr4_-_18206684_18206684 Show fit | 0.49 |
AT4G39070.1
|
B-box zinc finger family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G25490
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.1 | GO:0006097 | glyoxylate cycle(GO:0006097) |
| 0.0 | 1.1 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) negative regulation of response to alcohol(GO:1901420) |
| 0.0 | 0.9 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.0 | 0.9 | GO:0045168 | cell-cell signaling involved in cell fate commitment(GO:0045168) |
| 0.1 | 0.8 | GO:0010344 | seed oilbody biogenesis(GO:0010344) |
| 0.1 | 0.8 | GO:0070298 | negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298) |
| 0.0 | 0.8 | GO:0019915 | lipid storage(GO:0019915) |
| 0.0 | 0.8 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.1 | 0.7 | GO:0010158 | abaxial cell fate specification(GO:0010158) |
| 0.0 | 0.7 | GO:0006487 | protein N-linked glycosylation(GO:0006487) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 8.4 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 1.0 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 0.8 | GO:0016324 | apical plasma membrane(GO:0016324) |
| 0.0 | 0.7 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.0 | 0.7 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.2 | 0.5 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.1 | 0.5 | GO:0033063 | Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063) |
| 0.0 | 0.5 | GO:0030131 | clathrin adaptor complex(GO:0030131) |
| 0.1 | 0.4 | GO:0030139 | endocytic vesicle(GO:0030139) |
| 0.0 | 0.4 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.2 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
| 0.1 | 1.1 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.0 | 1.1 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 1.1 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.1 | 0.9 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.0 | 0.9 | GO:0015145 | monosaccharide transmembrane transporter activity(GO:0015145) |
| 0.0 | 0.9 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 0.9 | GO:0015385 | sodium:proton antiporter activity(GO:0015385) |
| 0.0 | 0.9 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.0 | 0.8 | GO:0047196 | long-chain-alcohol O-fatty-acyltransferase activity(GO:0047196) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.2 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.0 | 0.2 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.0 | 0.2 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.1 | 0.1 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.0 | 0.1 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.0 | 0.1 | PID ATR PATHWAY | ATR signaling pathway |
| 0.0 | 0.1 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.0 | 0.3 | REACTOME EXTENSION OF TELOMERES | Genes involved in Extension of Telomeres |
| 0.1 | 0.2 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.1 | 0.2 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
| 0.1 | 0.2 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.0 | 0.2 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.0 | 0.2 | REACTOME MITOTIC G2 G2 M PHASES | Genes involved in Mitotic G2-G2/M phases |
| 0.0 | 0.2 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.0 | 0.1 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |
| 0.0 | 0.1 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |