GSE130291:vernalization in Arabidopsis thaliana
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT4G25470
|
AT4G25470 | C-repeat/DRE binding factor 2 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
CBF2 | arTal_v1_Chr4_-_13016235_13016235 | 0.56 | 3.6e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr2_-_17712290_17712330 Show fit | 5.11 |
AT2G42540.2
AT2G42540.4 AT2G42540.1 AT2G42540.3 |
cold-regulated 15a |
|
arTal_v1_Chr5_+_5209717_5209717 Show fit | 4.28 |
AT5G15960.1
|
stress-responsive protein (KIN1) / stress-induced protein (KIN1) |
|
arTal_v1_Chr5_+_21240717_21240717 Show fit | 3.96 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
arTal_v1_Chr2_-_17710433_17710433 Show fit | 3.92 |
AT2G42530.1
|
cold regulated 15b |
|
arTal_v1_Chr1_+_3019639_3019639 Show fit | 3.91 |
AT1G09350.1
|
galactinol synthase 3 |
|
arTal_v1_Chr5_+_5211719_5211719 Show fit | 3.70 |
AT5G15970.1
|
stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6) |
|
arTal_v1_Chr1_+_3020221_3020221 Show fit | 3.69 |
AT1G09350.2
|
galactinol synthase 3 |
|
arTal_v1_Chr1_-_5765798_5765798 Show fit | 3.34 |
AT1G16850.1
|
transmembrane protein |
|
arTal_v1_Chr4_-_15954803_15954803 Show fit | 3.22 |
AT4G33070.1
|
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein |
|
arTal_v1_Chr4_+_14954204_14954204 Show fit | 2.93 |
AT4G30650.1
|
Low temperature and salt responsive protein family |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 18.6 | GO:0009631 | cold acclimation(GO:0009631) |
0.3 | 9.4 | GO:0006012 | galactose metabolic process(GO:0006012) |
1.5 | 7.4 | GO:0072708 | response to sorbitol(GO:0072708) |
0.7 | 6.7 | GO:0009819 | drought recovery(GO:0009819) |
0.1 | 6.0 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
0.2 | 5.9 | GO:0055072 | iron ion homeostasis(GO:0055072) |
0.0 | 5.2 | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process(GO:0043161) |
0.1 | 4.9 | GO:0006101 | tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101) |
0.1 | 4.7 | GO:0006972 | hyperosmotic response(GO:0006972) |
0.3 | 4.0 | GO:0009608 | response to symbiont(GO:0009608) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 40.9 | GO:0005829 | cytosol(GO:0005829) |
0.0 | 18.9 | GO:0005794 | Golgi apparatus(GO:0005794) |
0.0 | 12.0 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
0.0 | 7.0 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
0.0 | 6.1 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
0.1 | 5.1 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
0.0 | 4.0 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
0.0 | 3.9 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
0.0 | 3.5 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
0.1 | 3.2 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 9.3 | GO:0048029 | monosaccharide binding(GO:0048029) |
1.0 | 8.9 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
0.5 | 8.6 | GO:0016157 | sucrose synthase activity(GO:0016157) |
0.3 | 5.1 | GO:0005381 | iron ion transmembrane transporter activity(GO:0005381) |
0.4 | 4.1 | GO:0000293 | ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723) |
0.0 | 4.0 | GO:0042803 | protein homodimerization activity(GO:0042803) |
0.8 | 3.9 | GO:0008964 | phosphoenolpyruvate carboxylase activity(GO:0008964) |
0.2 | 3.8 | GO:0022821 | potassium ion antiporter activity(GO:0022821) |
0.1 | 3.8 | GO:0015562 | efflux transmembrane transporter activity(GO:0015562) |
0.1 | 2.9 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.8 | PID ATR PATHWAY | ATR signaling pathway |
0.1 | 0.3 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
0.1 | 0.2 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 0.2 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
0.0 | 0.2 | PID AP1 PATHWAY | AP-1 transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 1.5 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
0.2 | 0.9 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |
0.1 | 0.8 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
0.1 | 0.7 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
0.2 | 0.5 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
0.1 | 0.3 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.1 | 0.2 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
0.0 | 0.2 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
0.0 | 0.2 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |