Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT4G24020
Z-value: 2.55
Transcription factors associated with AT4G24020
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G24020
|
AT4G24020 | NIN like protein 7 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NLP7 | arTal_v1_Chr4_+_12479528_12479528 | 0.11 | 7.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_14753088_14753088 Show fit | 6.68 |
AT5G37260.1
|
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr3_+_5025383_5025383 Show fit | 4.98 |
AT3G14940.2
|
phosphoenolpyruvate carboxylase 3 |
|
| arTal_v1_Chr3_+_5025184_5025184 Show fit | 4.94 |
AT3G14940.1
|
phosphoenolpyruvate carboxylase 3 |
|
| arTal_v1_Chr5_+_1461786_1461786 Show fit | 4.17 |
AT5G04960.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr1_+_4342209_4342282 Show fit | 4.06 |
AT1G12740.1
AT1G12740.2 AT1G12740.3 AT1G12740.4 |
cytochrome P450, family 87, subfamily A, polypeptide 2 |
|
| arTal_v1_Chr4_-_14542565_14542565 Show fit | 4.03 |
AT4G29690.1
|
Alkaline-phosphatase-like family protein |
|
| arTal_v1_Chr2_+_13987669_13987669 Show fit | 3.95 |
AT2G32960.1
|
Phosphotyrosine protein phosphatases superfamily protein |
|
| arTal_v1_Chr1_-_3167924_3167924 Show fit | 3.93 |
AT1G09780.1
|
Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent |
|
| arTal_v1_Chr3_+_22298373_22298380 Show fit | 3.89 |
AT3G60330.2
AT3G60330.3 |
H[+]-ATPase 7 |
|
| arTal_v1_Chr3_+_22298549_22298578 Show fit | 3.87 |
AT3G60330.4
AT3G60330.1 |
H[+]-ATPase 7 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G24020
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 16.3 | GO:0006099 | tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101) |
| 0.1 | 8.3 | GO:0006470 | protein dephosphorylation(GO:0006470) |
| 0.2 | 8.0 | GO:0051453 | regulation of cellular pH(GO:0030641) regulation of intracellular pH(GO:0051453) |
| 0.0 | 7.5 | GO:0009909 | regulation of flower development(GO:0009909) |
| 0.0 | 6.5 | GO:0009409 | response to cold(GO:0009409) |
| 1.5 | 4.6 | GO:0015742 | alpha-ketoglutarate transport(GO:0015742) |
| 0.1 | 4.1 | GO:0010268 | brassinosteroid homeostasis(GO:0010268) |
| 0.0 | 4.0 | GO:0016311 | dephosphorylation(GO:0016311) |
| 0.6 | 3.9 | GO:0019320 | hexose catabolic process(GO:0019320) |
| 0.1 | 3.4 | GO:0006730 | one-carbon metabolic process(GO:0006730) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 20.4 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 9.0 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 8.6 | GO:0005911 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.0 | 8.2 | GO:0005740 | mitochondrial envelope(GO:0005740) |
| 0.0 | 7.8 | GO:0005773 | vacuole(GO:0005773) |
| 0.0 | 5.6 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 4.6 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 3.9 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 3.4 | GO:0022626 | cytosolic ribosome(GO:0022626) |
| 0.3 | 3.3 | GO:0017119 | Golgi transport complex(GO:0017119) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.1 | 10.7 | GO:0008964 | phosphoenolpyruvate carboxylase activity(GO:0008964) |
| 0.2 | 7.3 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
| 0.2 | 6.6 | GO:0004724 | magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724) |
| 1.1 | 4.3 | GO:0016656 | monodehydroascorbate reductase (NADH) activity(GO:0016656) |
| 0.0 | 4.2 | GO:0019900 | kinase binding(GO:0019900) |
| 0.0 | 4.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 1.0 | 4.0 | GO:0036218 | dTTP diphosphatase activity(GO:0036218) |
| 1.0 | 3.9 | GO:0046537 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity(GO:0046537) |
| 0.1 | 3.9 | GO:0004725 | protein tyrosine phosphatase activity(GO:0004725) |
| 0.0 | 3.8 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.3 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.1 | 1.2 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 1.0 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 1.0 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.2 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.2 | 1.2 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.3 | 1.0 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
| 0.1 | 1.0 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.1 | 0.9 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |