ISMARA results: AT4G23980

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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT4G23980

Z-value: 0.21

Transcription factors associated with AT4G23980

Gene Symbol	Gene ID	Gene Info
AT4G23980 TAIR	AT4G23980	auxin response factor 9

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
ARF9	arTal_v1_Chr4_+_12451143_12451198	0.27	3.5e-01	Click!

Activity profile of AT4G23980 motif

Sorted Z-values of AT4G23980 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
arTal_v1_Chr5_-_5741500_5741500 Show fit	0.22	AT5G17420.1	IRX3 TAIR Show fit	Cellulose synthase family protein
arTal_v1_Chr4_-_10316886_10316886 Show fit	0.19	AT4G18780.1	IRX1 TAIR Show fit	cellulose synthase family protein
arTal_v1_Chr3_+_3203988_3203988 Show fit	0.17	AT3G10340.1	PAL4 TAIR Show fit	phenylalanine ammonia-lyase 4
arTal_v1_Chr4_-_16063070_16063251 Show fit	0.15	AT4G33330.2 AT4G33330.1 AT4G33330.5 AT4G33330.3 AT4G33330.4	PGSIP3 TAIR Show fit	plant glycogenin-like starch initiation protein 3
arTal_v1_Chr5_+_5084524_5084695 Show fit	0.15	AT5G15630.1 AT5G15630.2 AT5G15630.3 AT5G15630.4 AT5G15630.5	IRX6 TAIR Show fit	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
arTal_v1_Chr5_+_17714390_17714390 Show fit	0.09	AT5G44030.2 AT5G44030.1	CESA4 TAIR Show fit	cellulose synthase A4
arTal_v1_Chr5_+_17715687_17715687 Show fit	0.05	AT5G44030.3	CESA4 TAIR Show fit	cellulose synthase A4
arTal_v1_Chr3_-_2578276_2578276 Show fit	0.05	AT3G08500.1	MYB83 TAIR Show fit	myb domain protein 83
arTal_v1_Chr5_+_24396981_24396981 Show fit	0.02	AT5G60690.1	REV TAIR Show fit	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
arTal_v1_Chr5_-_4065075_4065075 Show fit	0.00	AT5G12870.1	MYB46 TAIR Show fit	myb domain protein 46

Showing 1 to 10 of 10 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G23980

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Total log-likelihood	Term	Description
0.2	GO:0010116	positive regulation of abscisic acid biosynthetic process(GO:0010116)
0.2	GO:0010395	rhamnogalacturonan I metabolic process(GO:0010395)
0.2	GO:0009800	cinnamic acid biosynthetic process(GO:0009800)
0.1	GO:0010413	glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.1	GO:0052324	plant-type cell wall cellulose biosynthetic process(GO:0052324)

Showing 1 to 5 of 5 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0010330	cellulose synthase complex(GO:0010330)

Showing 1 to 1 of 1 entries

Gene overrepresentation in molecular function category:

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Total log-likelihood	Term	Description
0.6	GO:0016760	cellulose synthase (UDP-forming) activity(GO:0016760)
0.2	GO:0045548	phenylalanine ammonia-lyase activity(GO:0045548)
0.1	GO:0080116	glucuronoxylan glucuronosyltransferase activity(GO:0080116)

Showing 1 to 3 of 3 entries

Results for AT4G23980

Z-value: 0.21

Transcription factors associated with AT4G23980

Activity-expression correlation:

Activity profile of AT4G23980 motif

Sorted Z-values of AT4G23980 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G23980

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: