ISMARA results: AT4G23810

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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT4G23810

Z-value: 0.30

Transcription factors associated with AT4G23810

Gene Symbol	Gene ID	Gene Info
AT4G23810 TAIR	AT4G23810	WRKY family transcription factor

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
WRKY53	arTal_v1_Chr4_-_12393982_12393982	0.40	1.5e-01	Click!

Activity profile of AT4G23810 motif

Sorted Z-values of AT4G23810 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
arTal_v1_Chr4_-_13016235_13016235 Show fit	0.58	AT4G25470.1	CBF2 TAIR Show fit	C-repeat/DRE binding factor 2
arTal_v1_Chr4_+_10707344_10707378 Show fit	0.30	AT4G19690.2 AT4G19690.1	IRT1 TAIR Show fit	iron-regulated transporter 1
arTal_v1_Chr5_-_17331646_17331646 Show fit	0.28	AT5G43170.1	ZF3 TAIR Show fit	zinc-finger protein 3
arTal_v1_Chr5_+_4828499_4828641 Show fit	0.22	AT5G14930.2 AT5G14930.3 AT5G14930.1	SAG101 TAIR Show fit	senescence-associated gene 101
arTal_v1_Chr4_+_15382777_15382777 Show fit	0.21	AT4G31800.1	WRKY18 TAIR Show fit	WRKY DNA-binding protein 18
arTal_v1_Chr3_+_8309209_8309210 Show fit	0.20	AT3G23250.1 AT3G23250.2	MYB15 TAIR Show fit	myb domain protein 15
arTal_v1_Chr4_+_15383197_15383197 Show fit	0.20	AT4G31800.3	WRKY18 TAIR Show fit	WRKY DNA-binding protein 18
arTal_v1_Chr4_+_15383633_15383633 Show fit	0.19	AT4G31800.2	WRKY18 TAIR Show fit	WRKY DNA-binding protein 18
arTal_v1_Chr1_-_23019494_23019494 Show fit	0.18	AT1G62300.1	WRKY6 TAIR Show fit	WRKY family transcription factor
arTal_v1_Chr4_-_524249_524249 Show fit	0.16	AT4G01250.1	WRKY22 TAIR Show fit	WRKY family transcription factor

Showing 1 to 10 of 42 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G23810

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.8	GO:0050691	regulation of defense response to virus by host(GO:0050691)
0.1	0.3	GO:0015675	nickel cation transport(GO:0015675)
0.0	0.2	GO:0080029	cellular response to boron-containing substance levels(GO:0080029)
0.0	0.1	GO:2001009	regulation of plant-type cell wall cellulose biosynthetic process(GO:2001009)
0.0	0.1	GO:0046506	sulfolipid metabolic process(GO:0046505) sulfolipid biosynthetic process(GO:0046506)
0.0	0.1	GO:0046898	response to cycloheximide(GO:0046898) cellular response to external biotic stimulus(GO:0071217)
0.0	0.1	GO:0015919	peroxisomal membrane transport(GO:0015919)

Showing 1 to 7 of 7 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	GO:0015086	manganese ion transmembrane transporter activity(GO:0005384) cadmium ion transmembrane transporter activity(GO:0015086)
0.0	0.2	GO:0031420	pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)

Showing 1 to 2 of 2 entries