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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT4G23810

Z-value: 0.30

Transcription factors associated with AT4G23810

Gene Symbol Gene ID Gene Info
AT4G23810
AT4G23810 WRKY family transcription factor

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
WRKY53arTal_v1_Chr4_-_12393982_123939820.401.5e-01Click!

Activity profile of AT4G23810 motif

Sorted Z-values of AT4G23810 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_-_13016235 0.58 AT4G25470.1
CBF2
C-repeat/DRE binding factor 2
Chr4_+_10707344 0.30 AT4G19690.2
AT4G19690.1
IRT1
iron-regulated transporter 1
Chr5_-_17331646 0.28 AT5G43170.1
ZF3
zinc-finger protein 3
Chr5_+_4828499 0.22 AT5G14930.2
AT5G14930.3
AT5G14930.1
SAG101
senescence-associated gene 101
Chr4_+_15382777 0.21 AT4G31800.1
WRKY18
WRKY DNA-binding protein 18
Chr3_+_8309209 0.20 AT3G23250.1
AT3G23250.2
MYB15
myb domain protein 15
Chr4_+_15383197 0.20 AT4G31800.3
WRKY18
WRKY DNA-binding protein 18
Chr4_+_15383633 0.19 AT4G31800.2
WRKY18
WRKY DNA-binding protein 18
Chr1_-_23019494 0.18 AT1G62300.1
WRKY6
WRKY family transcription factor
Chr4_-_524249 0.16 AT4G01250.1
WRKY22
WRKY family transcription factor
Chr4_+_12291632 0.14 AT4G23550.1
WRKY29
WRKY family transcription factor
Chr5_+_25236945 0.11 AT5G62880.2
AT5G62880.1
RAC10
RAC-like 10
Chr3_+_8295617 0.10 AT3G23240.1
ERF1
ethylene response factor 1
Chr5_+_19179881 0.09 AT5G47230.1
ERF5
ethylene responsive element binding factor 5
Chr3_-_20042340 0.09 AT3G54120.1
AT3G54120
Reticulon family protein
Chr5_+_5033933 0.08 AT5G15510.3
AT5G15510.1
AT5G15510.4
AT5G15510.2
AT5G15510
TPX2 (targeting protein for Xklp2) protein family
Chr5_+_21865268 0.08 AT5G53860.1
AT5G53860.4
AT5G53860.3
AT5G53860.5
emb2737
embryo defective 2737
Chr3_+_19648711 0.08 AT3G52990.1
AT3G52990
Pyruvate kinase family protein
Chr4_-_17123855 0.08 AT4G36180.1
AT4G36180
Leucine-rich receptor-like protein kinase family protein
Chr3_+_19648880 0.08 AT3G52990.2
AT3G52990
Pyruvate kinase family protein
Chr5_+_21865069 0.07 AT5G53860.2
emb2737
embryo defective 2737
Chr2_-_19166949 0.06 AT2G46680.2
AT2G46680.1
HB-7
homeobox 7
Chr5_-_878549 0.06 AT5G03500.1
AT5G03500.5
AT5G03500.4
AT5G03500.2
AT5G03500
Mediator complex, subunit Med7
Chr4_+_15935373 0.06 AT4G33030.1
SQD1
sulfoquinovosyldiacylglycerol 1
Chr2_+_19000180 0.06 AT2G46270.2
AT2G46270.1
AT2G46270.4
AT2G46270.3
GBF3
G-box binding factor 3
Chr5_-_878364 0.06 AT5G03500.3
AT5G03500.6
AT5G03500
Mediator complex, subunit Med7
Chr1_+_16616988 0.06 AT1G43850.1
AT1G43850.2
SEU
SEUSS transcriptional co-regulator
Chr5_-_345457 0.05 AT5G01890.1
AT5G01890
Leucine-rich receptor-like protein kinase family protein
Chr3_+_3304225 0.05 AT3G10572.1
AT3G10572.2
APEM9
3-phosphoinositide-dependent protein kinase-1
Chr4_+_13236448 0.05 AT4G26120.1
AT4G26120
Ankyrin repeat family protein / BTB/POZ domain-containing protein
Chr4_+_13236253 0.05 AT4G26120.2
AT4G26120
Ankyrin repeat family protein / BTB/POZ domain-containing protein
Chr4_-_9335968 0.05 AT4G16566.1
AT4G16566.2
AT4G16566.3
HINT4
histidine triad nucleotide-binding 4
Chr4_-_18334893 0.04 AT4G39410.1
WRKY13
WRKY DNA-binding protein 13
Chr5_-_878116 0.04 AT5G03500.7
AT5G03500
Mediator complex, subunit Med7
Chr2_+_85401 0.04 AT2G01120.1
AT2G01120.2
ORC4
origin recognition complex subunit 4
Chr1_-_10801093 0.04 AT1G30490.1
PHV
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Chr2_-_8329944 0.04 AT2G19190.1
FRK1
FLG22-induced receptor-like kinase 1
Chr3_+_3304965 0.03 AT3G10572.3
APEM9
3-phosphoinositide-dependent protein kinase-1
Chr2_+_15165213 0.03 AT2G36120.1
DOT1
Glycine-rich protein family
Chr1_+_141870 0.03 AT1G01360.1
RCAR1
regulatory component of ABA receptor 1
Chr5_+_19825078 0.02 AT5G48900.1
AT5G48900
Pectin lyase-like superfamily protein
Chr3_+_25355 0.00 AT3G01080.2
AT3G01080.3
AT3G01080.1
WRKY58
WRKY DNA-binding protein 58

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G23810

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.8 GO:0050691 regulation of defense response to virus by host(GO:0050691)
0.1 0.3 GO:0015675 nickel cation transport(GO:0015675)
0.0 0.2 GO:0080029 cellular response to boron-containing substance levels(GO:0080029)
0.0 0.1 GO:2001009 regulation of plant-type cell wall cellulose biosynthetic process(GO:2001009)
0.0 0.1 GO:0046506 sulfolipid metabolic process(GO:0046505) sulfolipid biosynthetic process(GO:0046506)
0.0 0.1 GO:0046898 response to cycloheximide(GO:0046898) cellular response to external biotic stimulus(GO:0071217)
0.0 0.1 GO:0015919 peroxisomal membrane transport(GO:0015919)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0015086 manganese ion transmembrane transporter activity(GO:0005384) cadmium ion transmembrane transporter activity(GO:0015086)
0.0 0.2 GO:0031420 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)