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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G23550
Z-value: 2.29
Transcription factors associated with AT4G23550
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G23550
|
AT4G23550 | WRKY family transcription factor |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY29 | arTal_v1_Chr4_+_12291632_12291632 | 0.75 | 2.2e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_8075037_8075037 Show fit | 4.55 |
AT1G22810.1
|
Integrase-type DNA-binding superfamily protein |
|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 4.04 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr5_-_15849108_15849141 Show fit | 3.80 |
AT5G39580.2
AT5G39580.1 |
Peroxidase superfamily protein |
|
| arTal_v1_Chr1_-_4975705_4975705 Show fit | 3.40 |
AT1G14540.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr5_-_14566439_14566439 Show fit | 3.34 |
AT5G36925.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_17008528_17008528 Show fit | 3.30 |
AT3G46280.1
|
kinase-like protein |
|
| arTal_v1_Chr1_+_24292372_24292490 Show fit | 2.96 |
AT1G65390.1
AT1G65390.3 AT1G65390.2 |
phloem protein 2 A5 |
|
| arTal_v1_Chr1_+_6697874_6697874 Show fit | 2.94 |
AT1G19380.1
|
sugar, putative (DUF1195) |
|
| arTal_v1_Chr3_-_8290164_8290164 Show fit | 2.81 |
AT3G23230.1
|
Integrase-type DNA-binding superfamily protein |
|
| arTal_v1_Chr4_+_18519599_18519599 Show fit | 2.69 |
AT4G39940.1
|
APS-kinase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G23550
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 17.4 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 13.8 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 6.9 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 6.4 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.3 | 5.1 | GO:0015865 | purine nucleotide transport(GO:0015865) |
| 0.1 | 4.4 | GO:0042631 | cellular response to water deprivation(GO:0042631) |
| 0.0 | 4.3 | GO:0050832 | defense response to fungus(GO:0050832) |
| 0.1 | 4.1 | GO:0048544 | recognition of pollen(GO:0048544) |
| 0.6 | 3.9 | GO:0009759 | indole glucosinolate biosynthetic process(GO:0009759) |
| 0.1 | 3.6 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 52.2 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 11.5 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 9.6 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 3.9 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.1 | 3.7 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 3.1 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 2.8 | GO:0005740 | mitochondrial envelope(GO:0005740) |
| 0.1 | 2.3 | GO:0009986 | cell surface(GO:0009986) |
| 0.1 | 2.2 | GO:0000145 | exocyst(GO:0000145) |
| 0.1 | 2.1 | GO:0031012 | extracellular matrix(GO:0031012) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 16.5 | GO:0005516 | calmodulin binding(GO:0005516) |
| 0.0 | 10.1 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 8.1 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.1 | 6.8 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.2 | 3.9 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.1 | 3.8 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.1 | 3.8 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
| 0.4 | 3.7 | GO:0005471 | ATP:ADP antiporter activity(GO:0005471) |
| 0.1 | 3.7 | GO:0015171 | amino acid transmembrane transporter activity(GO:0015171) |
| 0.1 | 3.3 | GO:0004724 | magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.0 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.8 | PID P73PATHWAY | p73 transcription factor network |
| 0.1 | 0.7 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.2 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 2.0 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.3 | 1.0 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.1 | 0.9 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 0.8 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.0 | 0.8 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 0.6 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.1 | 0.6 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.1 | 0.6 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.0 | 0.6 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.1 | 0.4 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |