Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT4G21080
Z-value: 0.91
Transcription factors associated with AT4G21080
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G21080
|
AT4G21080 | Dof-type zinc finger domain-containing protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| DOF4.5 | arTal_v1_Chr4_-_11255351_11255351 | 0.13 | 6.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_1693548_1693548 Show fit | 1.21 |
AT3G05727.1
|
S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family |
|
| arTal_v1_Chr3_+_4729399_4729438 Show fit | 1.14 |
AT3G14210.1
AT3G14210.2 |
GDSL-like lipase/acylhydrolase superfamily protein |
|
| arTal_v1_Chr2_-_6493512_6493512 Show fit | 0.87 |
AT2G15020.1
|
hypothetical protein |
|
| arTal_v1_Chr2_+_538250_538250 Show fit | 0.85 |
AT2G02120.1
|
Scorpion toxin-like knottin superfamily protein |
|
| arTal_v1_Chr2_+_16216752_16216752 Show fit | 0.84 |
AT2G38800.1
|
Plant calmodulin-binding protein-like protein |
|
| arTal_v1_Chr5_-_19807853_19807853 Show fit | 0.83 |
AT5G48850.1
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
|
| arTal_v1_Chr3_-_21650347_21650347 Show fit | 0.82 |
AT3G58550.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_17199793_17199910 Show fit | 0.81 |
AT5G42900.1
AT5G42900.3 AT5G42900.2 |
cold regulated protein 27 |
|
| arTal_v1_Chr2_-_19370478_19370478 Show fit | 0.78 |
AT2G47180.1
|
galactinol synthase 1 |
|
| arTal_v1_Chr3_-_489467_489467 Show fit | 0.78 |
AT3G02380.1
|
CONSTANS-like 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G21080
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.3 | GO:0006412 | translation(GO:0006412) peptide biosynthetic process(GO:0043043) |
| 0.1 | 4.4 | GO:0019762 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.1 | 3.6 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.0 | 3.0 | GO:0018209 | peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209) |
| 0.2 | 2.9 | GO:0050779 | RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157) |
| 0.1 | 2.9 | GO:0072596 | protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596) |
| 0.2 | 2.5 | GO:0010100 | negative regulation of photomorphogenesis(GO:0010100) |
| 0.1 | 2.5 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.1 | 2.5 | GO:0019750 | chloroplast localization(GO:0019750) plastid localization(GO:0051644) |
| 0.1 | 2.5 | GO:0006897 | endocytosis(GO:0006897) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 80.9 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 31.7 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.1 | 10.0 | GO:0009579 | thylakoid(GO:0009579) |
| 0.1 | 8.6 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 7.7 | GO:0005911 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.0 | 7.6 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.1 | 7.0 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.0 | 5.4 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.1 | 4.9 | GO:0005875 | microtubule associated complex(GO:0005875) |
| 0.0 | 4.9 | GO:0005730 | nucleolus(GO:0005730) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.4 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.0 | 7.2 | GO:0043531 | ADP binding(GO:0043531) |
| 0.0 | 6.2 | GO:0008270 | zinc ion binding(GO:0008270) |
| 0.0 | 5.3 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 5.0 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.0 | 5.0 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.0 | 4.8 | GO:0004672 | protein kinase activity(GO:0004672) |
| 0.1 | 4.3 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.1 | 4.1 | GO:0042393 | histone binding(GO:0042393) |
| 0.0 | 4.0 | GO:0008092 | cytoskeletal protein binding(GO:0008092) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.3 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.2 | 1.2 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.2 | 0.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.2 | 0.7 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
| 0.2 | 0.6 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.2 | 0.6 | ST G ALPHA I PATHWAY | G alpha i Pathway |
| 0.1 | 0.6 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.1 | 0.5 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.1 | 0.5 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.1 | 0.4 | PID PDGFRA PATHWAY | PDGFR-alpha signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.3 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.3 | 1.2 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.0 | 1.2 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.3 | 1.0 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.3 | 1.0 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.1 | 0.9 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.0 | 0.9 | REACTOME INFLUENZA LIFE CYCLE | Genes involved in Influenza Life Cycle |
| 0.1 | 0.8 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.1 | 0.7 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.2 | 0.6 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |