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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT4G21030

Z-value: 0.84

Transcription factors associated with AT4G21030

Gene Symbol Gene ID Gene Info
AT4G21030
AT4G21030 Dof-type zinc finger domain-containing protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ATDOF4.2arTal_v1_Chr4_+_11231414_11231414-0.497.7e-02Click!

Activity profile of AT4G21030 motif

Sorted Z-values of AT4G21030 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr5_+_15878698 1.42 AT5G39660.1
AT5G39660.3
AT5G39660.2
CDF2
cycling DOF factor 2
Chr1_+_28829243 1.17 AT1G76800.1
AT1G76800
Vacuolar iron transporter (VIT) family protein
Chr5_-_5759817 1.11 AT5G17460.3
AT5G17460.2
AT5G17460.1
AT5G17460
glutamyl-tRNA (Gln) amidotransferase subunit C
Chr3_-_17506124 1.04 AT3G47500.1
CDF3
cycling DOF factor 3
Chr5_-_10092686 0.99 AT5G28080.7
AT5G28080.1
AT5G28080.6
AT5G28080.2
AT5G28080.5
AT5G28080.3
AT5G28080.4
AT5G28080.8
WNK9
Protein kinase superfamily protein
Chr3_+_2441565 0.94 AT3G07650.4
AT3G07650.1
AT3G07650.3
AT3G07650.2
COL9
CONSTANS-like 9
Chr2_+_12004658 0.93 AT2G28160.1
AT2G28160.2
FRU
FER-like regulator of iron uptake
Chr3_-_4762457 0.90 AT3G14280.1
AT3G14280
LL-diaminopimelate aminotransferase
Chr4_-_13761603 0.88 AT4G27560.1
AT4G27560
UDP-Glycosyltransferase superfamily protein
Chr3_+_8172479 0.83 AT3G23000.1
CIPK7
CBL-interacting protein kinase 7
Chr3_-_23046153 0.82 AT3G62270.1
AT3G62270
HCO3- transporter family
Chr5_-_24083528 0.79 AT5G59780.2
AT5G59780.1
AT5G59780.3
MYB59
myb domain protein 59
Chr5_+_4286740 0.78 AT5G13370.1
AT5G13370
Auxin-responsive GH3 family protein
Chr5_+_20070489 0.77 AT5G49480.1
CP1
Ca2+-binding protein 1
Chr5_+_20949291 0.77 AT5G51570.1
AT5G51570
SPFH/Band 7/PHB domain-containing membrane-associated protein family
Chr1_-_29002135 0.76 AT1G77180.1
AT1G77180.3
AT1G77180.2
SKIP
chromatin protein family
Chr4_-_1197630 0.75 AT4G02710.1
NET1C
Kinase interacting (KIP1-like) family protein
Chr3_+_22635803 0.74 AT3G61160.3
AT3G61160.6
AT3G61160.5
AT3G61160.4
AT3G61160.2
AT3G61160.1
AT3G61160
Protein kinase superfamily protein
Chr5_+_23940745 0.74 AT5G59350.1
AT5G59350.2
AT5G59350.3
AT5G59350
transmembrane protein
Chr1_+_11479763 0.74 AT1G31970.1
STRS1
DEA(D/H)-box RNA helicase family protein
Chr1_-_26540818 0.73 AT1G70420.1
AT1G70420
DNA ligase-like protein, putative (DUF1645)
Chr5_-_19302117 0.73 AT5G47610.1
AT5G47610
RING/U-box superfamily protein
Chr3_-_10011712 0.72 AT3G27150.2
AT3G27150.1
AT3G27150
Galactose oxidase/kelch repeat superfamily protein
Chr1_-_20563269 0.71 AT1G55110.2
AT1G55110.1
AT1G55110.3
IDD7
indeterminate(ID)-domain 7
Chr3_-_22915393 0.70 AT3G61890.1
HB-12
homeobox 12
Chr4_-_15614544 0.68 AT4G32340.1
AT4G32340
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_4688018 0.66 AT1G13670.1
AT1G13670
hypothetical protein
Chr1_-_28117405 0.65 AT1G74840.2
AT1G74840.1
AT1G74840
Homeodomain-like superfamily protein
Chr1_+_18310428 0.65 AT1G49470.1
AT1G49470
transmembrane epididymal protein (DUF716)
Chr3_+_22039476 0.63 AT3G59670.1
AT3G59670
elongation factor
Chr1_+_19996205 0.63 AT1G53590.1
NTMC2T6.1
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr2_+_505375 0.61 AT2G02070.1
AT2G02070.2
IDD5
indeterminate(ID)-domain 5
Chr3_-_16558169 0.56 AT3G45210.1
AT3G45210
transcription initiation factor TFIID subunit (Protein of unknown function, DUF584)
Chr4_+_8823725 0.55 AT4G15420.1
AT4G15420
Ubiquitin fusion degradation UFD1 family protein
Chr5_-_21429447 0.55 AT5G52870.2
AT5G52870.1
MAKR5
membrane-associated kinase regulator
Chr4_+_12431097 0.55 AT4G23920.1
UGE2
UDP-D-glucose/UDP-D-galactose 4-epimerase 2
Chr5_+_16297465 0.54 AT5G40720.1
AT5G40720.3
AT5G40720
C3H4 type zinc finger protein (DUF23)
Chr1_+_18416474 0.53 AT1G49760.2
AT1G49760.1
PAB8
poly(A) binding protein 8
Chr1_+_26032827 0.53 AT1G69250.2
AT1G69250
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein
Chr1_+_26032637 0.52 AT1G69250.1
AT1G69250
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein
Chr4_+_8823402 0.51 AT4G15420.2
AT4G15420
Ubiquitin fusion degradation UFD1 family protein
Chr5_-_5759449 0.51 AT5G17460.4
AT5G17460.5
AT5G17460
glutamyl-tRNA (Gln) amidotransferase subunit C
Chr3_-_6416591 0.51 AT3G18640.2
AT3G18640.1
AT3G18640
Zinc finger C-x8-C-x5-C-x3-H type family protein
Chr3_-_3044919 0.51 AT3G09920.3
AT3G09920.1
AT3G09920.2
AT3G09920.4
PIP5K9
phosphatidyl inositol monophosphate 5 kinase
Chr4_+_17695496 0.50 AT4G37660.1
AT4G37660
Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein
Chr2_-_13373862 0.50 AT2G31360.1
ADS2
16:0delta9 desaturase 2
Chr2_-_13374018 0.50 AT2G31360.2
ADS2
16:0delta9 desaturase 2
Chr3_+_2016246 0.50 AT3G06510.1
AT3G06510.2
SFR2
Glycosyl hydrolase superfamily protein
Chr1_+_218834 0.49 AT1G01600.1
CYP86A4
cytochrome P450, family 86, subfamily A, polypeptide 4
Chr3_-_4330218 0.48 AT3G13330.1
PA200
proteasome activating protein 200
Chr1_+_28631223 0.48 AT1G76320.2
AT1G76320.3
AT1G76320.4
AT1G76320.1
FRS4
FAR1-related sequence 4
Chr3_+_18672102 0.48 AT3G50350.2
AT3G50350
membrane insertase, putative (DUF1685)
Chr4_-_386479 0.48 AT4G00900.2
ECA2
ER-type Ca2+-ATPase 2
Chr5_-_7560190 0.47 AT5G22740.1
CSLA02
cellulose synthase-like A02
Chr4_-_8879327 0.47 AT4G15550.1
IAGLU
indole-3-acetate beta-D-glucosyltransferase
Chr3_-_1192659 0.47 AT3G04470.1
AT3G04470
Ankyrin repeat family protein
Chr4_+_15141068 0.47 AT4G31140.1
AT4G31140
O-Glycosyl hydrolases family 17 protein
Chr4_+_10633619 0.47 AT4G19510.3
AT4G19510.4
AT4G19510.5
AT4G19510.6
AT4G19510.8
AT4G19510.7
AT4G19510.9
AT4G19510.1
AT4G19510.10
AT4G19510.2
AT4G19510
Disease resistance protein (TIR-NBS-LRR class)
Chr4_-_386850 0.45 AT4G00900.1
ECA2
ER-type Ca2+-ATPase 2
Chr3_-_23004292 0.45 AT3G62120.2
AT3G62120.1
AT3G62120.3
AT3G62120
Class II aaRS and biotin synthetases superfamily protein
Chr1_+_28865314 0.45 AT1G76880.1
AT1G76880
Duplicated homeodomain-like superfamily protein
Chr3_+_4608076 0.45 AT3G13960.1
GRF5
growth-regulating factor 5
Chr2_+_7382805 0.45 AT2G16990.2
AT2G16990.5
AT2G16990.4
AT2G16990.3
AT2G16990.1
AT2G16990.7
AT2G16990.6
AT2G16990.8
AT2G16990
Major facilitator superfamily protein
Chr5_-_24456115 0.45 AT5G60790.1
ABCF1
ABC transporter family protein
Chr2_+_19486842 0.45 AT2G47490.1
NDT1
NAD+ transporter 1
Chr3_-_3608092 0.44 AT3G11450.1
AT3G11450
DnaJ and Myb-like DNA-binding domain-containing protein
Chr3_-_8718211 0.44 AT3G24140.1
AT3G24140.2
FMA
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr2_-_10666011 0.44 AT2G25070.1
AT2G25070.2
AT2G25070
Protein phosphatase 2C family protein
Chr5_+_24147099 0.44 AT5G59980.1
AT5G59980.2
AT5G59980.3
AT5G59980.4
GAF1
Polymerase/histidinol phosphatase-like protein
Chr3_+_18672906 0.44 AT3G50350.1
AT3G50350
membrane insertase, putative (DUF1685)
Chr1_-_1940463 0.43 AT1G06360.1
AT1G06360.2
AT1G06360
Fatty acid desaturase family protein
Chr4_+_6218319 0.43 AT4G09890.1
AT4G09890
mediator of RNA polymerase II transcription subunit, putative (DUF3511)
Chr1_-_6916823 0.42 AT1G19920.1
APS2
Pseudouridine synthase/archaeosine transglycosylase-like family protein
Chr1_+_24901882 0.42 AT1G66760.2
AT1G66760.1
AT1G66760.4
AT1G66760.3
AT1G66760
MATE efflux family protein
Chr2_+_8183638 0.41 AT2G18890.1
AT2G18890.3
AT2G18890
Protein kinase superfamily protein
Chr3_-_19281345 0.41 AT3G51950.3
AT3G51950.1
AT3G51950.2
AT3G51950
Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
Chr5_+_20753040 0.41 AT5G51050.1
APC2
Mitochondrial substrate carrier family protein
Chr2_-_10905267 0.41 AT2G25620.2
AT2G25620.1
DBP1
DNA-binding protein phosphatase 1
Chr2_+_13411940 0.41 AT2G31490.1
AT2G31490
neuronal acetylcholine receptor subunit alpha-5
Chr5_-_10943378 0.41 AT5G28920.1
AT5G28920
hypothetical protein
Chr1_-_29117344 0.40 AT1G77480.2
AT1G77480.1
AT1G77480
Eukaryotic aspartyl protease family protein
Chr5_-_629280 0.39 AT5G02770.1
MOS11
Protein MODIFIER OF SNC1 11
Chr3_-_19280823 0.39 AT3G51950.4
AT3G51950
Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
Chr1_+_20273567 0.39 AT1G54310.2
AT1G54310.1
AT1G54310
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_+_14129180 0.39 AT4G28600.2
AT4G28600.3
AT4G28600.1
NPGR2
no pollen germination related 2
Chr4_-_8188811 0.38 AT4G14200.1
AT4G14200
Pentatricopeptide repeat (PPR) superfamily protein
Chr5_+_2533581 0.38 AT5G07940.4
AT5G07940.1
AT5G07940.3
AT5G07940.5
AT5G07940.2
AT5G07940
dentin sialophosphoprotein-like protein
Chr5_+_25613096 0.38 AT5G63990.1
AT5G63990
Inositol monophosphatase family protein
Chr4_-_13106864 0.37 AT4G25730.1
AT4G25730
FtsJ-like methyltransferase family protein
Chr5_-_1556605 0.37 AT5G05240.1
AT5G05240
cation-transporting ATPase
Chr5_+_16297300 0.37 AT5G40720.2
AT5G40720
C3H4 type zinc finger protein (DUF23)
Chr5_-_7022113 0.37 AT5G20730.3
AT5G20730.1
AT5G20730.2
NPH4
Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein
Chr3_+_649814 0.36 AT3G02910.1
AT3G02910
AIG2-like (avirulence induced gene) family protein
Chr5_+_25613258 0.36 AT5G63990.2
AT5G63990
Inositol monophosphatase family protein
Chr5_-_4379356 0.36 AT5G13590.4
AT5G13590.2
AT5G13590.6
AT5G13590.5
AT5G13590.3
AT5G13590.1
AT5G13590
hypothetical protein
Chr2_-_10304812 0.36 AT2G24230.1
AT2G24230
Leucine-rich repeat protein kinase family protein
Chr2_+_12877799 0.36 AT2G30160.1
AT2G30160
Mitochondrial substrate carrier family protein
Chr5_+_24090645 0.36 AT5G59790.1
AT5G59790.2
AT5G59790
UPSTREAM OF FLC protein (DUF966)
Chr1_-_5782433 0.36 AT1G16900.1
EBS3
Alg9-like mannosyltransferase family
Chr4_-_13194124 0.36 AT4G25990.1
AT4G25990.3
CIL
CCT motif family protein
Chr5_+_26926551 0.35 AT5G67470.1
FH6
formin homolog 6
Chr1_-_706630 0.35 AT1G03040.2
AT1G03040.3
AT1G03040.1
AT1G03040
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_-_23281271 0.34 AT5G57480.1
AT5G57480
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_-_1140491 0.34 AT4G02590.2
AT4G02590.3
AT4G02590.1
UNE12
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr1_+_10491975 0.34 AT1G29950.2
AT1G29950
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_+_3369479 0.34 AT3G10760.1
AT3G10760
Homeodomain-like superfamily protein
Chr3_-_6416394 0.34 AT3G18640.3
AT3G18640
Zinc finger C-x8-C-x5-C-x3-H type family protein
Chr3_+_12591378 0.34 AT3G30841.1
AT3G30841.2
AT3G30841
Cofactor-independent phosphoglycerate mutase
Chr5_+_17324909 0.34 AT5G43150.1
AT5G43150
elongation factor
Chr2_+_12218019 0.33 AT2G28540.2
AT2G28540.1
AT2G28540
RNA binding (RRM/RBD/RNP motifs) family protein
Chr4_+_14677661 0.33 AT4G30020.2
AT4G30020.3
AT4G30020
PA-domain containing subtilase family protein
Chr3_-_949042 0.33 AT3G03770.2
AT3G03770
Leucine-rich repeat protein kinase family protein
Chr1_-_11630745 0.33 AT1G32240.2
AT1G32240.1
KAN2
Homeodomain-like superfamily protein
Chr3_-_948878 0.33 AT3G03770.3
AT3G03770
Leucine-rich repeat protein kinase family protein
Chr5_-_8910063 0.33 AT5G25590.1
AT5G25590
DNA ligase (DUF630 and DUF632)
Chr1_+_10491698 0.33 AT1G29950.1
AT1G29950
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_+_22662849 0.33 AT3G61220.1
AT3G61220.3
AT3G61220.2
SDR1
NAD(P)-binding Rossmann-fold superfamily protein
Chr3_-_7576623 0.32 AT3G21500.1
AT3G21500.3
AT3G21500.2
DXPS1
1-deoxy-D-xylulose 5-phosphate synthase 1
Chr3_-_7978635 0.32 AT3G22530.1
AT3G22530
heat shock protein
Chr3_-_949238 0.32 AT3G03770.1
AT3G03770
Leucine-rich repeat protein kinase family protein
Chr5_-_23803684 0.32 AT5G58950.1
AT5G58950
Protein kinase superfamily protein
Chr4_+_12985661 0.32 AT4G25410.1
AT4G25410
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr2_+_5951823 0.32 AT2G14110.1
AT2G14110.2
AT2G14110
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_+_27066948 0.32 AT1G71920.1
AT1G71920.2
AT1G71920.4
AT1G71920.5
AT1G71920.3
AT1G71920.6
HISN6B
HISTIDINE BIOSYNTHESIS 6B
Chr4_+_17904532 0.32 AT4G38170.1
FRS9
FAR1-related sequence 9
Chr1_+_28970714 0.32 AT1G77110.1
AT1G77110.2
PIN6
Auxin efflux carrier family protein
Chr5_-_556442 0.32 AT5G02500.2
HSC70-1
heat shock cognate protein 70-1
Chr2_+_8183879 0.32 AT2G18890.2
AT2G18890
Protein kinase superfamily protein
Chr5_-_25733313 0.32 AT5G64340.1
SAC51
transcription factor SAC51
Chr5_-_556623 0.31 AT5G02500.1
HSC70-1
heat shock cognate protein 70-1
Chr4_+_15993957 0.31 AT4G33160.2
AT4G33160.1
AT4G33160
F-box family protein
Chr3_-_18551327 0.31 AT3G50040.2
AT3G50040.3
AT3G50040.4
AT3G50040
hypothetical protein
Chr1_-_23286797 0.31 AT1G62870.1
AT1G62870
hypothetical protein
Chr1_-_11544166 0.31 AT1G32090.1
AT1G32090
early-responsive to dehydration stress protein (ERD4)
Chr5_-_19163918 0.31 AT5G47180.2
AT5G47180.1
AT5G47180
Plant VAMP (vesicle-associated membrane protein) family protein
Chr1_+_26597067 0.30 AT1G70550.2
AT1G70550.1
AT1G70550
NEP-interacting protein, putative (DUF239)
Chr1_-_20343554 0.30 AT1G54460.1
AT1G54460
TPX2 (targeting protein for Xklp2) protein family
Chr1_-_4503543 0.30 AT1G13195.2
AT1G13195.1
AT1G13195
RING/U-box superfamily protein
Chr1_+_29289873 0.29 AT1G77885.1
AT1G77885
hypothetical protein
Chr1_-_26977000 0.29 AT1G71710.1
AT1G71710
DNAse I-like superfamily protein
Chr5_+_23144947 0.29 AT5G57130.1
AT5G57130
Clp amino terminal domain-containing protein
Chr1_+_5702153 0.29 AT1G16680.1
AT1G16680
Chaperone DnaJ-domain superfamily protein
Chr5_+_9815500 0.29 AT5G27720.1
emb1644
Small nuclear ribonucleoprotein family protein
Chr1_-_21338756 0.28 AT1G57610.3
AT1G57610.4
AT1G57610
calcium uniporter (DUF607)
Chr2_-_16413206 0.28 AT2G39300.4
AT2G39300.2
AT2G39300
CAP-gly domain linker
Chr4_-_13193620 0.28 AT4G25990.2
CIL
CCT motif family protein
Chr1_+_23821453 0.28 AT1G64180.1
AT1G64180
intracellular protein transport protein USO1-like protein
Chr5_-_1555930 0.28 AT5G05240.2
AT5G05240
cation-transporting ATPase
Chr1_+_28085753 0.28 AT1G74750.3
AT1G74750.2
AT1G74750
Pentatricopeptide repeat (PPR) superfamily protein
Chr4_-_13690478 0.28 AT4G27340.2
AT4G27340.3
AT4G27340.1
AT4G27340
Met-10+ like family protein
Chr3_+_18800306 0.28 AT3G50630.1
AT3G50630.2
KRP2
KIP-related protein 2
Chr3_+_22895519 0.28 AT3G61850.2
AT3G61850.5
DAG1
Dof-type zinc finger DNA-binding family protein
Chr5_-_10543558 0.28 AT5G28540.1
BIP1
heat shock protein 70 (Hsp 70) family protein
Chr3_+_23424157 0.28 AT3G63440.1
CKX6
cytokinin oxidase/dehydrogenase 6
Chr1_-_20784017 0.28 AT1G55610.2
AT1G55610.1
BRL1
BRI1 like
Chr5_+_2716700 0.28 AT5G08430.2
AT5G08430
SWIB/MDM2 and Plus-3 and GYF domain-containing protein
Chr1_-_363142 0.27 AT1G02060.1
AT1G02060
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_-_21339034 0.27 AT1G57610.1
AT1G57610.2
AT1G57610
calcium uniporter (DUF607)
Chr1_-_11328818 0.27 AT1G31650.2
ROPGEF14
RHO guanyl-nucleotide exchange factor 14
Chr3_-_2067417 0.27 AT3G06620.1
AT3G06620
PAS domain-containing protein tyrosine kinase family protein
Chr1_-_24657638 0.27 AT1G66200.2
AT1G66200.3
AT1G66200.1
GSR2
hypothetical protein
Chr5_+_2716313 0.27 AT5G08430.1
AT5G08430
SWIB/MDM2 and Plus-3 and GYF domain-containing protein
Chr4_-_8794433 0.27 AT4G15390.1
AT4G15390.2
AT4G15390
HXXXD-type acyl-transferase family protein
Chr1_-_10184512 0.27 AT1G29160.1
AT1G29160
Dof-type zinc finger DNA-binding family protein
Chr3_-_5045520 0.26 AT3G14980.4
AT3G14980.5
AT3G14980.2
AT3G14980.1
AT3G14980.3
ROS4
Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein
Chr1_+_26782048 0.26 AT1G71010.1
FAB1C
FORMS APLOID AND BINUCLEATE CELLS 1C
Chr4_+_14678096 0.26 AT4G30020.4
AT4G30020
PA-domain containing subtilase family protein
Chr1_+_6224405 0.26 AT1G18090.1
AT1G18090.2
AT1G18090
5'-3' exonuclease family protein
Chr3_+_8152038 0.26 AT3G22970.2
AT3G22970.1
AT3G22970
hypothetical protein (DUF506)
Chr1_-_24996117 0.25 AT1G66970.2
AT1G66970.3
AT1G66970.1
SVL2
SHV3-like 2
Chr1_+_19180744 0.25 AT1G51720.1
AT1G51720.2
AT1G51720
Amino acid dehydrogenase family protein
Chr1_+_19181031 0.25 AT1G51720.4
AT1G51720.3
AT1G51720
Amino acid dehydrogenase family protein
Chr2_-_17720366 0.25 AT2G42570.1
TBL39
TRICHOME BIREFRINGENCE-LIKE 39
Chr1_+_26093026 0.25 AT1G69420.2
AT1G69420.1
AT1G69420
DHHC-type zinc finger family protein
Chr5_-_1866433 0.25 AT5G06160.1
ATO
splicing factor-like protein
Chr1_+_28086800 0.24 AT1G74750.4
AT1G74750
Pentatricopeptide repeat (PPR) superfamily protein
Chr3_-_596496 0.24 AT3G02750.1
AT3G02750.2
AT3G02750
Protein phosphatase 2C family protein
Chr5_+_22817480 0.24 AT5G56340.1
ATCRT1
RING/U-box superfamily protein
Chr3_-_8741725 0.24 AT3G24180.2
AT3G24180.1
AT3G24180
Beta-glucosidase, GBA2 type family protein
Chr3_-_2189387 0.24 AT3G06930.2
AT3G06930.1
PRMT4B
protein arginine methyltransferase 4B
Chr1_-_29468376 0.23 AT1G78320.2
AT1G78320.1
GSTU23
glutathione S-transferase TAU 23
Chr3_+_19429686 0.23 AT3G52420.1
OEP7
outer envelope membrane protein 7
Chr5_-_21362160 0.23 AT5G52660.1
AT5G52660.2
AT5G52660
Homeodomain-like superfamily protein
Chr3_-_595755 0.23 AT3G02750.3
AT3G02750
Protein phosphatase 2C family protein
Chr2_-_14200674 0.23 AT2G33530.1
scpl46
serine carboxypeptidase-like 46
Chr5_+_9803647 0.23 AT5G27690.1
AT5G27690
Heavy metal transport/detoxification superfamily protein
Chr1_-_25095526 0.22 AT1G67120.2
AT1G67120.1
AT1G67120
midasin-like protein
Chr2_+_6733534 0.22 AT2G15430.2
AT2G15430.1
AT2G15430.3
NRPB3
DNA-directed RNA polymerase family protein
Chr5_+_19683809 0.22 AT5G48560.1
AT5G48560.2
AT5G48560
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_-_21024131 0.22 AT3G56760.1
AT3G56760
Protein kinase superfamily protein
Chr3_+_7567565 0.22 AT3G21480.1
AT3G21480
BRCT domain-containing DNA repair protein
Chr1_-_11330791 0.22 AT1G31650.1
ROPGEF14
RHO guanyl-nucleotide exchange factor 14
Chr5_-_6338209 0.22 AT5G18980.1
AT5G18980.2
AT5G18980
ARM repeat superfamily protein
Chr4_-_12078877 0.22 AT4G23040.1
AT4G23040
Ubiquitin-like superfamily protein
Chr4_+_12488040 0.22 AT4G24040.1
TRE1
trehalase 1
Chr1_+_23082036 0.22 AT1G62380.1
ACO2
ACC oxidase 2
Chr5_+_17610972 0.22 AT5G43810.2
AT5G43810.3
AGO10
Stabilizer of iron transporter SufD / Polynucleotidyl transferase
Chr2_+_12363426 0.22 AT2G28810.2
AT2G28810.1
AT2G28810
Dof-type zinc finger DNA-binding family protein
Chr4_-_11021272 0.21 AT4G20430.2
AT4G20430.1
AT4G20430.3
AT4G20430
Subtilase family protein
Chr5_+_26836139 0.21 AT5G67260.1
AT5G67260.2
CYCD3%3B2
CYCLIN D3;2

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G21030

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 GO:0035865 cellular response to potassium ion(GO:0035865)
0.1 0.4 GO:0015904 tetracycline transport(GO:0015904) antibiotic transport(GO:0042891)
0.1 0.4 GO:0043132 NAD transport(GO:0043132)
0.1 0.4 GO:0010377 guard cell fate commitment(GO:0010377) response to low humidity(GO:0090547)
0.1 0.4 GO:0035019 somatic stem cell population maintenance(GO:0035019)
0.1 0.9 GO:0006542 glutamine biosynthetic process(GO:0006542)
0.1 0.9 GO:0048579 negative regulation of long-day photoperiodism, flowering(GO:0048579)
0.1 0.5 GO:0006537 glutamate biosynthetic process(GO:0006537)
0.1 0.2 GO:0045694 regulation of embryo sac egg cell differentiation(GO:0045694)
0.1 0.4 GO:0080121 AMP transport(GO:0080121)
0.1 0.2 GO:0007639 tissue homeostasis(GO:0001894) homeostasis of number of meristem cells(GO:0007639) homeostasis of number of cells(GO:0048872) homeostasis of number of cells within a tissue(GO:0048873)
0.1 0.2 GO:0019919 peptidyl-arginine methylation, to asymmetrical-dimethyl arginine(GO:0019919) histone arginine methylation(GO:0034969) peptidyl-arginine N-methylation(GO:0035246) peptidyl-arginine omega-N-methylation(GO:0035247)
0.1 0.3 GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly(GO:0010606)
0.1 0.3 GO:0030643 cellular phosphate ion homeostasis(GO:0030643) cellular trivalent inorganic anion homeostasis(GO:0072502)
0.1 0.2 GO:0044154 histone H3-K14 acetylation(GO:0044154)
0.1 0.2 GO:0019377 glycosylceramide metabolic process(GO:0006677) glucosylceramide metabolic process(GO:0006678) glucosylceramide catabolic process(GO:0006680) glycosphingolipid metabolic process(GO:0006687) glycolipid catabolic process(GO:0019377) glycosylceramide catabolic process(GO:0046477) glycosphingolipid catabolic process(GO:0046479) ceramide catabolic process(GO:0046514)
0.1 1.4 GO:0006636 unsaturated fatty acid biosynthetic process(GO:0006636)
0.1 2.5 GO:0048506 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.1 0.2 GO:0009727 detection of ethylene stimulus(GO:0009727)
0.1 0.2 GO:0015742 alpha-ketoglutarate transport(GO:0015742)
0.1 1.2 GO:0000103 sulfate assimilation(GO:0000103)
0.0 0.1 GO:0017145 stem cell division(GO:0017145)
0.0 0.8 GO:0010555 response to mannitol(GO:0010555)
0.0 0.2 GO:0009590 detection of gravity(GO:0009590)
0.0 0.1 GO:0040030 regulation of molecular function, epigenetic(GO:0040030) negative regulation of molecular function, epigenetic(GO:0045857)
0.0 0.4 GO:0016973 poly(A)+ mRNA export from nucleus(GO:0016973)
0.0 0.2 GO:0009647 skotomorphogenesis(GO:0009647)
0.0 0.4 GO:0071051 polyadenylation-dependent snoRNA 3'-end processing(GO:0071051)
0.0 0.2 GO:0009263 deoxyribonucleotide biosynthetic process(GO:0009263)
0.0 0.4 GO:0006490 oligosaccharide-lipid intermediate biosynthetic process(GO:0006490)
0.0 0.3 GO:0090158 endoplasmic reticulum membrane organization(GO:0090158)
0.0 0.9 GO:0042026 protein refolding(GO:0042026)
0.0 0.4 GO:0050688 regulation of immune effector process(GO:0002697) regulation of defense response to virus(GO:0050688)
0.0 0.3 GO:1904030 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.0 0.9 GO:0070588 calcium ion transmembrane transport(GO:0070588)
0.0 0.1 GO:0046901 tetrahydrofolylpolyglutamate biosynthetic process(GO:0046901)
0.0 0.1 GO:0009855 determination of bilateral symmetry(GO:0009855)
0.0 0.4 GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic(GO:0090502)
0.0 0.4 GO:0048359 mucilage metabolic process involved in seed coat development(GO:0048359)
0.0 0.3 GO:0052803 histidine biosynthetic process(GO:0000105) histidine metabolic process(GO:0006547) imidazole-containing compound metabolic process(GO:0052803)
0.0 0.3 GO:0010105 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.0 0.3 GO:0033962 cytoplasmic mRNA processing body assembly(GO:0033962)
0.0 0.2 GO:0006183 GTP biosynthetic process(GO:0006183)
0.0 0.6 GO:0006012 galactose metabolic process(GO:0006012)
0.0 0.1 GO:0019264 L-serine catabolic process(GO:0006565) glycine biosynthetic process from serine(GO:0019264) response to tetrahydrofolate(GO:1904481) cellular response to tetrahydrofolate(GO:1904482)
0.0 0.2 GO:0043966 histone H3 acetylation(GO:0043966)
0.0 0.4 GO:0009785 blue light signaling pathway(GO:0009785) intracellular receptor signaling pathway(GO:0030522)
0.0 0.2 GO:0052548 negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548)
0.0 0.0 GO:0010372 positive regulation of gibberellin biosynthetic process(GO:0010372)
0.0 0.5 GO:0010499 proteasomal ubiquitin-independent protein catabolic process(GO:0010499)
0.0 0.2 GO:0007143 female meiotic division(GO:0007143)
0.0 0.5 GO:0050826 response to freezing(GO:0050826)
0.0 0.2 GO:0046352 disaccharide catabolic process(GO:0046352)
0.0 0.4 GO:0046856 phosphatidylinositol dephosphorylation(GO:0046856)
0.0 0.3 GO:0010103 stomatal complex morphogenesis(GO:0010103)
0.0 0.1 GO:0018202 peptidyl-diphthamide metabolic process(GO:0017182) peptidyl-diphthamide biosynthetic process from peptidyl-histidine(GO:0017183) peptidyl-histidine modification(GO:0018202)
0.0 0.3 GO:0065001 polarity specification of adaxial/abaxial axis(GO:0009944) specification of axis polarity(GO:0065001)
0.0 0.4 GO:0080092 regulation of pollen tube growth(GO:0080092)
0.0 0.2 GO:0010375 stomatal complex patterning(GO:0010375)
0.0 0.2 GO:0048497 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.0 0.1 GO:0080119 ER body organization(GO:0080119)
0.0 0.2 GO:0048826 cotyledon morphogenesis(GO:0048826)
0.0 0.3 GO:0046854 lipid phosphorylation(GO:0046834) phosphatidylinositol phosphorylation(GO:0046854)
0.0 0.0 GO:0031468 nuclear envelope reassembly(GO:0031468)
0.0 0.8 GO:0010114 response to red light(GO:0010114)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0005655 nucleolar ribonuclease P complex(GO:0005655) multimeric ribonuclease P complex(GO:0030681)
0.1 0.3 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)
0.1 0.2 GO:0005775 vacuolar lumen(GO:0005775)
0.1 0.3 GO:1990124 messenger ribonucleoprotein complex(GO:1990124)
0.0 0.7 GO:0031359 intrinsic component of plastid outer membrane(GO:0031354) integral component of plastid outer membrane(GO:0031355) intrinsic component of chloroplast outer membrane(GO:0031358) integral component of chloroplast outer membrane(GO:0031359)
0.0 0.3 GO:0030014 CCR4-NOT complex(GO:0030014)
0.0 0.4 GO:0000176 nuclear exosome (RNase complex)(GO:0000176)
0.0 0.3 GO:0005688 U6 snRNP(GO:0005688)
0.0 0.8 GO:0005764 lysosome(GO:0005764)
0.0 0.1 GO:0000791 euchromatin(GO:0000791)
0.0 0.2 GO:0000418 DNA-directed RNA polymerase IV complex(GO:0000418)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0046480 galactolipid galactosyltransferase activity(GO:0046480)
0.2 0.5 GO:0016504 peptidase activator activity(GO:0016504)
0.2 1.4 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.1 0.7 GO:0004441 inositol-1,4-bisphosphate 1-phosphatase activity(GO:0004441)
0.1 0.9 GO:0004356 glutamate-ammonia ligase activity(GO:0004356)
0.1 0.5 GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
0.1 0.4 GO:0008493 tetracycline transporter activity(GO:0008493) toxin transporter activity(GO:0019534) antibiotic transporter activity(GO:0042895)
0.1 0.3 GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity(GO:0008661)
0.1 0.3 GO:0017070 U6 snRNA binding(GO:0017070)
0.1 0.3 GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity(GO:0046537)
0.1 0.4 GO:0004781 sulfate adenylyltransferase (ATP) activity(GO:0004781)
0.1 0.4 GO:0080122 AMP transmembrane transporter activity(GO:0080122)
0.1 0.2 GO:0015026 coreceptor activity(GO:0015026)
0.1 0.2 GO:0016277 [myelin basic protein]-arginine N-methyltransferase activity(GO:0016277)
0.1 0.3 GO:0004400 histidinol-phosphate transaminase activity(GO:0004400)
0.1 0.2 GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)
0.1 0.2 GO:0050736 O-malonyltransferase activity(GO:0050736)
0.1 0.2 GO:0019779 Atg8 ligase activity(GO:0019776) Atg8 activating enzyme activity(GO:0019779)
0.1 0.4 GO:0004376 glycolipid mannosyltransferase activity(GO:0004376)
0.1 0.2 GO:0004348 glucosylceramidase activity(GO:0004348)
0.1 0.7 GO:0002020 protease binding(GO:0002020)
0.1 0.4 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.1 0.5 GO:0016639 oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor(GO:0016639)
0.0 0.4 GO:0004526 ribonuclease P activity(GO:0004526)
0.0 0.2 GO:0047780 citrate dehydratase activity(GO:0047780)
0.0 0.4 GO:0035198 miRNA binding(GO:0035198)
0.0 0.5 GO:0003730 mRNA 3'-UTR binding(GO:0003730)
0.0 0.6 GO:0003978 UDP-glucose 4-epimerase activity(GO:0003978)
0.0 0.5 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.0 0.2 GO:0015141 succinate transmembrane transporter activity(GO:0015141)
0.0 0.8 GO:0036002 pre-mRNA binding(GO:0036002)
0.0 0.3 GO:0017108 5'-flap endonuclease activity(GO:0017108)
0.0 0.9 GO:0005388 calcium-transporting ATPase activity(GO:0005388)
0.0 0.5 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 0.2 GO:0003680 AT DNA binding(GO:0003680)
0.0 0.3 GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) protein serine/threonine kinase inhibitor activity(GO:0030291)
0.0 0.4 GO:0051184 cofactor transporter activity(GO:0051184)
0.0 0.3 GO:0016464 chloroplast protein-transporting ATPase activity(GO:0016464)
0.0 0.3 GO:0016307 1-phosphatidylinositol-3-phosphate 5-kinase activity(GO:0000285) phosphatidylinositol phosphate kinase activity(GO:0016307)
0.0 0.1 GO:0008686 GTP cyclohydrolase II activity(GO:0003935) 3,4-dihydroxy-2-butanone-4-phosphate synthase activity(GO:0008686)
0.0 0.2 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.0 0.8 GO:0004724 magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724)
0.0 0.5 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.0 0.4 GO:0034485 phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity(GO:0034485)
0.0 0.5 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.0 0.2 GO:0010385 double-stranded methylated DNA binding(GO:0010385)
0.0 0.3 GO:0008106 alcohol dehydrogenase (NADP+) activity(GO:0008106)
0.0 0.1 GO:0004372 glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905)
0.0 0.3 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.0 0.1 GO:0004326 tetrahydrofolylpolyglutamate synthase activity(GO:0004326)
0.0 0.3 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.0 0.4 GO:0045309 protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219)
0.0 0.1 GO:0010178 IAA-amino acid conjugate hydrolase activity(GO:0010178)
0.0 0.2 GO:0008137 NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.0 0.3 GO:0051787 misfolded protein binding(GO:0051787)
0.0 0.6 GO:0080044 quercetin 7-O-glucosyltransferase activity(GO:0080044)
0.0 0.7 GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228)
0.0 0.9 GO:0003724 RNA helicase activity(GO:0003724)
0.0 0.4 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.0 0.8 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.0 0.1 GO:0004575 sucrose alpha-glucosidase activity(GO:0004575)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 ST ADRENERGIC Adrenergic Pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 REACTOME CITRIC ACID CYCLE TCA CYCLE Genes involved in Citric acid cycle (TCA cycle)