GSE130291:vernalization in Arabidopsis thaliana
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT4G21030
|
AT4G21030 | Dof-type zinc finger domain-containing protein |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
ATDOF4.2 | arTal_v1_Chr4_+_11231414_11231414 | -0.49 | 7.7e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr5_+_15878698_15878726 Show fit | 1.42 |
AT5G39660.1
AT5G39660.3 AT5G39660.2 |
cycling DOF factor 2 |
|
arTal_v1_Chr1_+_28829243_28829243 Show fit | 1.17 |
AT1G76800.1
|
Vacuolar iron transporter (VIT) family protein |
|
arTal_v1_Chr5_-_5759817_5759817 Show fit | 1.11 |
AT5G17460.3
AT5G17460.2 AT5G17460.1 |
glutamyl-tRNA (Gln) amidotransferase subunit C |
|
arTal_v1_Chr3_-_17506124_17506124 Show fit | 1.04 |
AT3G47500.1
|
cycling DOF factor 3 |
|
arTal_v1_Chr5_-_10092686_10092721 Show fit | 0.99 |
AT5G28080.7
AT5G28080.1 AT5G28080.6 AT5G28080.2 AT5G28080.5 AT5G28080.3 AT5G28080.4 AT5G28080.8 |
Protein kinase superfamily protein |
|
arTal_v1_Chr3_+_2441565_2441657 Show fit | 0.94 |
AT3G07650.4
AT3G07650.1 AT3G07650.3 AT3G07650.2 |
CONSTANS-like 9 |
|
arTal_v1_Chr2_+_12004658_12004700 Show fit | 0.93 |
AT2G28160.1
AT2G28160.2 |
FER-like regulator of iron uptake |
|
arTal_v1_Chr3_-_4762457_4762457 Show fit | 0.90 |
AT3G14280.1
|
LL-diaminopimelate aminotransferase |
|
arTal_v1_Chr4_-_13761603_13761603 Show fit | 0.88 |
AT4G27560.1
|
UDP-Glycosyltransferase superfamily protein |
|
arTal_v1_Chr3_+_8172479_8172479 Show fit | 0.83 |
AT3G23000.1
|
CBL-interacting protein kinase 7 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.5 | GO:0048506 | regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510) |
0.1 | 1.4 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
0.1 | 1.2 | GO:0000103 | sulfate assimilation(GO:0000103) |
0.1 | 0.9 | GO:0006542 | glutamine biosynthetic process(GO:0006542) |
0.1 | 0.9 | GO:0048579 | negative regulation of long-day photoperiodism, flowering(GO:0048579) |
0.0 | 0.9 | GO:0042026 | protein refolding(GO:0042026) |
0.0 | 0.9 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
0.2 | 0.8 | GO:0035865 | cellular response to potassium ion(GO:0035865) |
0.0 | 0.8 | GO:0010555 | response to mannitol(GO:0010555) |
0.0 | 0.8 | GO:0010114 | response to red light(GO:0010114) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.8 | GO:0005764 | lysosome(GO:0005764) |
0.0 | 0.7 | GO:0031359 | intrinsic component of plastid outer membrane(GO:0031354) integral component of plastid outer membrane(GO:0031355) intrinsic component of chloroplast outer membrane(GO:0031358) integral component of chloroplast outer membrane(GO:0031359) |
0.1 | 0.4 | GO:0005655 | nucleolar ribonuclease P complex(GO:0005655) multimeric ribonuclease P complex(GO:0030681) |
0.0 | 0.4 | GO:0000176 | nuclear exosome (RNase complex)(GO:0000176) |
0.1 | 0.3 | GO:0034663 | endoplasmic reticulum chaperone complex(GO:0034663) |
0.1 | 0.3 | GO:1990124 | messenger ribonucleoprotein complex(GO:1990124) |
0.0 | 0.3 | GO:0030014 | CCR4-NOT complex(GO:0030014) |
0.0 | 0.3 | GO:0005688 | U6 snRNP(GO:0005688) |
0.1 | 0.2 | GO:0005775 | vacuolar lumen(GO:0005775) |
0.0 | 0.2 | GO:0000418 | DNA-directed RNA polymerase IV complex(GO:0000418) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.4 | GO:0009979 | 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979) |
0.1 | 0.9 | GO:0004356 | glutamate-ammonia ligase activity(GO:0004356) |
0.0 | 0.9 | GO:0005388 | calcium-transporting ATPase activity(GO:0005388) |
0.0 | 0.9 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.0 | 0.8 | GO:0036002 | pre-mRNA binding(GO:0036002) |
0.0 | 0.8 | GO:0004724 | magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724) |
0.0 | 0.8 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.1 | 0.7 | GO:0004441 | inositol-1,4-bisphosphate 1-phosphatase activity(GO:0004441) |
0.1 | 0.7 | GO:0002020 | protease binding(GO:0002020) |
0.0 | 0.7 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.7 | ST ADRENERGIC | Adrenergic Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.2 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |