GSE130291:vernalization in Arabidopsis thaliana
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT4G21030
|
AT4G21030 | Dof-type zinc finger domain-containing protein |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
ATDOF4.2 | arTal_v1_Chr4_+_11231414_11231414 | -0.49 | 7.7e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
Chr5_+_15878698 | 1.42 |
AT5G39660.1
AT5G39660.3 AT5G39660.2 |
CDF2
|
cycling DOF factor 2 |
Chr1_+_28829243 | 1.17 |
AT1G76800.1
|
AT1G76800
|
Vacuolar iron transporter (VIT) family protein |
Chr5_-_5759817 | 1.11 |
AT5G17460.3
AT5G17460.2 AT5G17460.1 |
AT5G17460
|
glutamyl-tRNA (Gln) amidotransferase subunit C |
Chr3_-_17506124 | 1.04 |
AT3G47500.1
|
CDF3
|
cycling DOF factor 3 |
Chr5_-_10092686 | 0.99 |
AT5G28080.7
AT5G28080.1 AT5G28080.6 AT5G28080.2 AT5G28080.5 AT5G28080.3 AT5G28080.4 AT5G28080.8 |
WNK9
|
Protein kinase superfamily protein |
Chr3_+_2441565 | 0.94 |
AT3G07650.4
AT3G07650.1 AT3G07650.3 AT3G07650.2 |
COL9
|
CONSTANS-like 9 |
Chr2_+_12004658 | 0.93 |
AT2G28160.1
AT2G28160.2 |
FRU
|
FER-like regulator of iron uptake |
Chr3_-_4762457 | 0.90 |
AT3G14280.1
|
AT3G14280
|
LL-diaminopimelate aminotransferase |
Chr4_-_13761603 | 0.88 |
AT4G27560.1
|
AT4G27560
|
UDP-Glycosyltransferase superfamily protein |
Chr3_+_8172479 | 0.83 |
AT3G23000.1
|
CIPK7
|
CBL-interacting protein kinase 7 |
Chr3_-_23046153 | 0.82 |
AT3G62270.1
|
AT3G62270
|
HCO3- transporter family |
Chr5_-_24083528 | 0.79 |
AT5G59780.2
AT5G59780.1 AT5G59780.3 |
MYB59
|
myb domain protein 59 |
Chr5_+_4286740 | 0.78 |
AT5G13370.1
|
AT5G13370
|
Auxin-responsive GH3 family protein |
Chr5_+_20070489 | 0.77 |
AT5G49480.1
|
CP1
|
Ca2+-binding protein 1 |
Chr5_+_20949291 | 0.77 |
AT5G51570.1
|
AT5G51570
|
SPFH/Band 7/PHB domain-containing membrane-associated protein family |
Chr1_-_29002135 | 0.76 |
AT1G77180.1
AT1G77180.3 AT1G77180.2 |
SKIP
|
chromatin protein family |
Chr4_-_1197630 | 0.75 |
AT4G02710.1
|
NET1C
|
Kinase interacting (KIP1-like) family protein |
Chr3_+_22635803 | 0.74 |
AT3G61160.3
AT3G61160.6 AT3G61160.5 AT3G61160.4 AT3G61160.2 AT3G61160.1 |
AT3G61160
|
Protein kinase superfamily protein |
Chr5_+_23940745 | 0.74 |
AT5G59350.1
AT5G59350.2 AT5G59350.3 |
AT5G59350
|
transmembrane protein |
Chr1_+_11479763 | 0.74 |
AT1G31970.1
|
STRS1
|
DEA(D/H)-box RNA helicase family protein |
Chr1_-_26540818 | 0.73 |
AT1G70420.1
|
AT1G70420
|
DNA ligase-like protein, putative (DUF1645) |
Chr5_-_19302117 | 0.73 |
AT5G47610.1
|
AT5G47610
|
RING/U-box superfamily protein |
Chr3_-_10011712 | 0.72 |
AT3G27150.2
AT3G27150.1 |
AT3G27150
|
Galactose oxidase/kelch repeat superfamily protein |
Chr1_-_20563269 | 0.71 |
AT1G55110.2
AT1G55110.1 AT1G55110.3 |
IDD7
|
indeterminate(ID)-domain 7 |
Chr3_-_22915393 | 0.70 |
AT3G61890.1
|
HB-12
|
homeobox 12 |
Chr4_-_15614544 | 0.68 |
AT4G32340.1
|
AT4G32340
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
Chr1_+_4688018 | 0.66 |
AT1G13670.1
|
AT1G13670
|
hypothetical protein |
Chr1_-_28117405 | 0.65 |
AT1G74840.2
AT1G74840.1 |
AT1G74840
|
Homeodomain-like superfamily protein |
Chr1_+_18310428 | 0.65 |
AT1G49470.1
|
AT1G49470
|
transmembrane epididymal protein (DUF716) |
Chr3_+_22039476 | 0.63 |
AT3G59670.1
|
AT3G59670
|
elongation factor |
Chr1_+_19996205 | 0.63 |
AT1G53590.1
|
NTMC2T6.1
|
Calcium-dependent lipid-binding (CaLB domain) family protein |
Chr2_+_505375 | 0.61 |
AT2G02070.1
AT2G02070.2 |
IDD5
|
indeterminate(ID)-domain 5 |
Chr3_-_16558169 | 0.56 |
AT3G45210.1
|
AT3G45210
|
transcription initiation factor TFIID subunit (Protein of unknown function, DUF584) |
Chr4_+_8823725 | 0.55 |
AT4G15420.1
|
AT4G15420
|
Ubiquitin fusion degradation UFD1 family protein |
Chr5_-_21429447 | 0.55 |
AT5G52870.2
AT5G52870.1 |
MAKR5
|
membrane-associated kinase regulator |
Chr4_+_12431097 | 0.55 |
AT4G23920.1
|
UGE2
|
UDP-D-glucose/UDP-D-galactose 4-epimerase 2 |
Chr5_+_16297465 | 0.54 |
AT5G40720.1
AT5G40720.3 |
AT5G40720
|
C3H4 type zinc finger protein (DUF23) |
Chr1_+_18416474 | 0.53 |
AT1G49760.2
AT1G49760.1 |
PAB8
|
poly(A) binding protein 8 |
Chr1_+_26032827 | 0.53 |
AT1G69250.2
|
AT1G69250
|
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein |
Chr1_+_26032637 | 0.52 |
AT1G69250.1
|
AT1G69250
|
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein |
Chr4_+_8823402 | 0.51 |
AT4G15420.2
|
AT4G15420
|
Ubiquitin fusion degradation UFD1 family protein |
Chr5_-_5759449 | 0.51 |
AT5G17460.4
AT5G17460.5 |
AT5G17460
|
glutamyl-tRNA (Gln) amidotransferase subunit C |
Chr3_-_6416591 | 0.51 |
AT3G18640.2
AT3G18640.1 |
AT3G18640
|
Zinc finger C-x8-C-x5-C-x3-H type family protein |
Chr3_-_3044919 | 0.51 |
AT3G09920.3
AT3G09920.1 AT3G09920.2 AT3G09920.4 |
PIP5K9
|
phosphatidyl inositol monophosphate 5 kinase |
Chr4_+_17695496 | 0.50 |
AT4G37660.1
|
AT4G37660
|
Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein |
Chr2_-_13373862 | 0.50 |
AT2G31360.1
|
ADS2
|
16:0delta9 desaturase 2 |
Chr2_-_13374018 | 0.50 |
AT2G31360.2
|
ADS2
|
16:0delta9 desaturase 2 |
Chr3_+_2016246 | 0.50 |
AT3G06510.1
AT3G06510.2 |
SFR2
|
Glycosyl hydrolase superfamily protein |
Chr1_+_218834 | 0.49 |
AT1G01600.1
|
CYP86A4
|
cytochrome P450, family 86, subfamily A, polypeptide 4 |
Chr3_-_4330218 | 0.48 |
AT3G13330.1
|
PA200
|
proteasome activating protein 200 |
Chr1_+_28631223 | 0.48 |
AT1G76320.2
AT1G76320.3 AT1G76320.4 AT1G76320.1 |
FRS4
|
FAR1-related sequence 4 |
Chr3_+_18672102 | 0.48 |
AT3G50350.2
|
AT3G50350
|
membrane insertase, putative (DUF1685) |
Chr4_-_386479 | 0.48 |
AT4G00900.2
|
ECA2
|
ER-type Ca2+-ATPase 2 |
Chr5_-_7560190 | 0.47 |
AT5G22740.1
|
CSLA02
|
cellulose synthase-like A02 |
Chr4_-_8879327 | 0.47 |
AT4G15550.1
|
IAGLU
|
indole-3-acetate beta-D-glucosyltransferase |
Chr3_-_1192659 | 0.47 |
AT3G04470.1
|
AT3G04470
|
Ankyrin repeat family protein |
Chr4_+_15141068 | 0.47 |
AT4G31140.1
|
AT4G31140
|
O-Glycosyl hydrolases family 17 protein |
Chr4_+_10633619 | 0.47 |
AT4G19510.3
AT4G19510.4 AT4G19510.5 AT4G19510.6 AT4G19510.8 AT4G19510.7 AT4G19510.9 AT4G19510.1 AT4G19510.10 AT4G19510.2 |
AT4G19510
|
Disease resistance protein (TIR-NBS-LRR class) |
Chr4_-_386850 | 0.45 |
AT4G00900.1
|
ECA2
|
ER-type Ca2+-ATPase 2 |
Chr3_-_23004292 | 0.45 |
AT3G62120.2
AT3G62120.1 AT3G62120.3 |
AT3G62120
|
Class II aaRS and biotin synthetases superfamily protein |
Chr1_+_28865314 | 0.45 |
AT1G76880.1
|
AT1G76880
|
Duplicated homeodomain-like superfamily protein |
Chr3_+_4608076 | 0.45 |
AT3G13960.1
|
GRF5
|
growth-regulating factor 5 |
Chr2_+_7382805 | 0.45 |
AT2G16990.2
AT2G16990.5 AT2G16990.4 AT2G16990.3 AT2G16990.1 AT2G16990.7 AT2G16990.6 AT2G16990.8 |
AT2G16990
|
Major facilitator superfamily protein |
Chr5_-_24456115 | 0.45 |
AT5G60790.1
|
ABCF1
|
ABC transporter family protein |
Chr2_+_19486842 | 0.45 |
AT2G47490.1
|
NDT1
|
NAD+ transporter 1 |
Chr3_-_3608092 | 0.44 |
AT3G11450.1
|
AT3G11450
|
DnaJ and Myb-like DNA-binding domain-containing protein |
Chr3_-_8718211 | 0.44 |
AT3G24140.1
AT3G24140.2 |
FMA
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Chr2_-_10666011 | 0.44 |
AT2G25070.1
AT2G25070.2 |
AT2G25070
|
Protein phosphatase 2C family protein |
Chr5_+_24147099 | 0.44 |
AT5G59980.1
AT5G59980.2 AT5G59980.3 AT5G59980.4 |
GAF1
|
Polymerase/histidinol phosphatase-like protein |
Chr3_+_18672906 | 0.44 |
AT3G50350.1
|
AT3G50350
|
membrane insertase, putative (DUF1685) |
Chr1_-_1940463 | 0.43 |
AT1G06360.1
AT1G06360.2 |
AT1G06360
|
Fatty acid desaturase family protein |
Chr4_+_6218319 | 0.43 |
AT4G09890.1
|
AT4G09890
|
mediator of RNA polymerase II transcription subunit, putative (DUF3511) |
Chr1_-_6916823 | 0.42 |
AT1G19920.1
|
APS2
|
Pseudouridine synthase/archaeosine transglycosylase-like family protein |
Chr1_+_24901882 | 0.42 |
AT1G66760.2
AT1G66760.1 AT1G66760.4 AT1G66760.3 |
AT1G66760
|
MATE efflux family protein |
Chr2_+_8183638 | 0.41 |
AT2G18890.1
AT2G18890.3 |
AT2G18890
|
Protein kinase superfamily protein |
Chr3_-_19281345 | 0.41 |
AT3G51950.3
AT3G51950.1 AT3G51950.2 |
AT3G51950
|
Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein |
Chr5_+_20753040 | 0.41 |
AT5G51050.1
|
APC2
|
Mitochondrial substrate carrier family protein |
Chr2_-_10905267 | 0.41 |
AT2G25620.2
AT2G25620.1 |
DBP1
|
DNA-binding protein phosphatase 1 |
Chr2_+_13411940 | 0.41 |
AT2G31490.1
|
AT2G31490
|
neuronal acetylcholine receptor subunit alpha-5 |
Chr5_-_10943378 | 0.41 |
AT5G28920.1
|
AT5G28920
|
hypothetical protein |
Chr1_-_29117344 | 0.40 |
AT1G77480.2
AT1G77480.1 |
AT1G77480
|
Eukaryotic aspartyl protease family protein |
Chr5_-_629280 | 0.39 |
AT5G02770.1
|
MOS11
|
Protein MODIFIER OF SNC1 11 |
Chr3_-_19280823 | 0.39 |
AT3G51950.4
|
AT3G51950
|
Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein |
Chr1_+_20273567 | 0.39 |
AT1G54310.2
AT1G54310.1 |
AT1G54310
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
Chr4_+_14129180 | 0.39 |
AT4G28600.2
AT4G28600.3 AT4G28600.1 |
NPGR2
|
no pollen germination related 2 |
Chr4_-_8188811 | 0.38 |
AT4G14200.1
|
AT4G14200
|
Pentatricopeptide repeat (PPR) superfamily protein |
Chr5_+_2533581 | 0.38 |
AT5G07940.4
AT5G07940.1 AT5G07940.3 AT5G07940.5 AT5G07940.2 |
AT5G07940
|
dentin sialophosphoprotein-like protein |
Chr5_+_25613096 | 0.38 |
AT5G63990.1
|
AT5G63990
|
Inositol monophosphatase family protein |
Chr4_-_13106864 | 0.37 |
AT4G25730.1
|
AT4G25730
|
FtsJ-like methyltransferase family protein |
Chr5_-_1556605 | 0.37 |
AT5G05240.1
|
AT5G05240
|
cation-transporting ATPase |
Chr5_+_16297300 | 0.37 |
AT5G40720.2
|
AT5G40720
|
C3H4 type zinc finger protein (DUF23) |
Chr5_-_7022113 | 0.37 |
AT5G20730.3
AT5G20730.1 AT5G20730.2 |
NPH4
|
Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein |
Chr3_+_649814 | 0.36 |
AT3G02910.1
|
AT3G02910
|
AIG2-like (avirulence induced gene) family protein |
Chr5_+_25613258 | 0.36 |
AT5G63990.2
|
AT5G63990
|
Inositol monophosphatase family protein |
Chr5_-_4379356 | 0.36 |
AT5G13590.4
AT5G13590.2 AT5G13590.6 AT5G13590.5 AT5G13590.3 AT5G13590.1 |
AT5G13590
|
hypothetical protein |
Chr2_-_10304812 | 0.36 |
AT2G24230.1
|
AT2G24230
|
Leucine-rich repeat protein kinase family protein |
Chr2_+_12877799 | 0.36 |
AT2G30160.1
|
AT2G30160
|
Mitochondrial substrate carrier family protein |
Chr5_+_24090645 | 0.36 |
AT5G59790.1
AT5G59790.2 |
AT5G59790
|
UPSTREAM OF FLC protein (DUF966) |
Chr1_-_5782433 | 0.36 |
AT1G16900.1
|
EBS3
|
Alg9-like mannosyltransferase family |
Chr4_-_13194124 | 0.36 |
AT4G25990.1
AT4G25990.3 |
CIL
|
CCT motif family protein |
Chr5_+_26926551 | 0.35 |
AT5G67470.1
|
FH6
|
formin homolog 6 |
Chr1_-_706630 | 0.35 |
AT1G03040.2
AT1G03040.3 AT1G03040.1 |
AT1G03040
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Chr5_-_23281271 | 0.34 |
AT5G57480.1
|
AT5G57480
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Chr4_-_1140491 | 0.34 |
AT4G02590.2
AT4G02590.3 AT4G02590.1 |
UNE12
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Chr1_+_10491975 | 0.34 |
AT1G29950.2
|
AT1G29950
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Chr3_+_3369479 | 0.34 |
AT3G10760.1
|
AT3G10760
|
Homeodomain-like superfamily protein |
Chr3_-_6416394 | 0.34 |
AT3G18640.3
|
AT3G18640
|
Zinc finger C-x8-C-x5-C-x3-H type family protein |
Chr3_+_12591378 | 0.34 |
AT3G30841.1
AT3G30841.2 |
AT3G30841
|
Cofactor-independent phosphoglycerate mutase |
Chr5_+_17324909 | 0.34 |
AT5G43150.1
|
AT5G43150
|
elongation factor |
Chr2_+_12218019 | 0.33 |
AT2G28540.2
AT2G28540.1 |
AT2G28540
|
RNA binding (RRM/RBD/RNP motifs) family protein |
Chr4_+_14677661 | 0.33 |
AT4G30020.2
AT4G30020.3 |
AT4G30020
|
PA-domain containing subtilase family protein |
Chr3_-_949042 | 0.33 |
AT3G03770.2
|
AT3G03770
|
Leucine-rich repeat protein kinase family protein |
Chr1_-_11630745 | 0.33 |
AT1G32240.2
AT1G32240.1 |
KAN2
|
Homeodomain-like superfamily protein |
Chr3_-_948878 | 0.33 |
AT3G03770.3
|
AT3G03770
|
Leucine-rich repeat protein kinase family protein |
Chr5_-_8910063 | 0.33 |
AT5G25590.1
|
AT5G25590
|
DNA ligase (DUF630 and DUF632) |
Chr1_+_10491698 | 0.33 |
AT1G29950.1
|
AT1G29950
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Chr3_+_22662849 | 0.33 |
AT3G61220.1
AT3G61220.3 AT3G61220.2 |
SDR1
|
NAD(P)-binding Rossmann-fold superfamily protein |
Chr3_-_7576623 | 0.32 |
AT3G21500.1
AT3G21500.3 AT3G21500.2 |
DXPS1
|
1-deoxy-D-xylulose 5-phosphate synthase 1 |
Chr3_-_7978635 | 0.32 |
AT3G22530.1
|
AT3G22530
|
heat shock protein |
Chr3_-_949238 | 0.32 |
AT3G03770.1
|
AT3G03770
|
Leucine-rich repeat protein kinase family protein |
Chr5_-_23803684 | 0.32 |
AT5G58950.1
|
AT5G58950
|
Protein kinase superfamily protein |
Chr4_+_12985661 | 0.32 |
AT4G25410.1
|
AT4G25410
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Chr2_+_5951823 | 0.32 |
AT2G14110.1
AT2G14110.2 |
AT2G14110
|
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
Chr1_+_27066948 | 0.32 |
AT1G71920.1
AT1G71920.2 AT1G71920.4 AT1G71920.5 AT1G71920.3 AT1G71920.6 |
HISN6B
|
HISTIDINE BIOSYNTHESIS 6B |
Chr4_+_17904532 | 0.32 |
AT4G38170.1
|
FRS9
|
FAR1-related sequence 9 |
Chr1_+_28970714 | 0.32 |
AT1G77110.1
AT1G77110.2 |
PIN6
|
Auxin efflux carrier family protein |
Chr5_-_556442 | 0.32 |
AT5G02500.2
|
HSC70-1
|
heat shock cognate protein 70-1 |
Chr2_+_8183879 | 0.32 |
AT2G18890.2
|
AT2G18890
|
Protein kinase superfamily protein |
Chr5_-_25733313 | 0.32 |
AT5G64340.1
|
SAC51
|
transcription factor SAC51 |
Chr5_-_556623 | 0.31 |
AT5G02500.1
|
HSC70-1
|
heat shock cognate protein 70-1 |
Chr4_+_15993957 | 0.31 |
AT4G33160.2
AT4G33160.1 |
AT4G33160
|
F-box family protein |
Chr3_-_18551327 | 0.31 |
AT3G50040.2
AT3G50040.3 AT3G50040.4 |
AT3G50040
|
hypothetical protein |
Chr1_-_23286797 | 0.31 |
AT1G62870.1
|
AT1G62870
|
hypothetical protein |
Chr1_-_11544166 | 0.31 |
AT1G32090.1
|
AT1G32090
|
early-responsive to dehydration stress protein (ERD4) |
Chr5_-_19163918 | 0.31 |
AT5G47180.2
AT5G47180.1 |
AT5G47180
|
Plant VAMP (vesicle-associated membrane protein) family protein |
Chr1_+_26597067 | 0.30 |
AT1G70550.2
AT1G70550.1 |
AT1G70550
|
NEP-interacting protein, putative (DUF239) |
Chr1_-_20343554 | 0.30 |
AT1G54460.1
|
AT1G54460
|
TPX2 (targeting protein for Xklp2) protein family |
Chr1_-_4503543 | 0.30 |
AT1G13195.2
AT1G13195.1 |
AT1G13195
|
RING/U-box superfamily protein |
Chr1_+_29289873 | 0.29 |
AT1G77885.1
|
AT1G77885
|
hypothetical protein |
Chr1_-_26977000 | 0.29 |
AT1G71710.1
|
AT1G71710
|
DNAse I-like superfamily protein |
Chr5_+_23144947 | 0.29 |
AT5G57130.1
|
AT5G57130
|
Clp amino terminal domain-containing protein |
Chr1_+_5702153 | 0.29 |
AT1G16680.1
|
AT1G16680
|
Chaperone DnaJ-domain superfamily protein |
Chr5_+_9815500 | 0.29 |
AT5G27720.1
|
emb1644
|
Small nuclear ribonucleoprotein family protein |
Chr1_-_21338756 | 0.28 |
AT1G57610.3
AT1G57610.4 |
AT1G57610
|
calcium uniporter (DUF607) |
Chr2_-_16413206 | 0.28 |
AT2G39300.4
AT2G39300.2 |
AT2G39300
|
CAP-gly domain linker |
Chr4_-_13193620 | 0.28 |
AT4G25990.2
|
CIL
|
CCT motif family protein |
Chr1_+_23821453 | 0.28 |
AT1G64180.1
|
AT1G64180
|
intracellular protein transport protein USO1-like protein |
Chr5_-_1555930 | 0.28 |
AT5G05240.2
|
AT5G05240
|
cation-transporting ATPase |
Chr1_+_28085753 | 0.28 |
AT1G74750.3
AT1G74750.2 |
AT1G74750
|
Pentatricopeptide repeat (PPR) superfamily protein |
Chr4_-_13690478 | 0.28 |
AT4G27340.2
AT4G27340.3 AT4G27340.1 |
AT4G27340
|
Met-10+ like family protein |
Chr3_+_18800306 | 0.28 |
AT3G50630.1
AT3G50630.2 |
KRP2
|
KIP-related protein 2 |
Chr3_+_22895519 | 0.28 |
AT3G61850.2
AT3G61850.5 |
DAG1
|
Dof-type zinc finger DNA-binding family protein |
Chr5_-_10543558 | 0.28 |
AT5G28540.1
|
BIP1
|
heat shock protein 70 (Hsp 70) family protein |
Chr3_+_23424157 | 0.28 |
AT3G63440.1
|
CKX6
|
cytokinin oxidase/dehydrogenase 6 |
Chr1_-_20784017 | 0.28 |
AT1G55610.2
AT1G55610.1 |
BRL1
|
BRI1 like |
Chr5_+_2716700 | 0.28 |
AT5G08430.2
|
AT5G08430
|
SWIB/MDM2 and Plus-3 and GYF domain-containing protein |
Chr1_-_363142 | 0.27 |
AT1G02060.1
|
AT1G02060
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
Chr1_-_21339034 | 0.27 |
AT1G57610.1
AT1G57610.2 |
AT1G57610
|
calcium uniporter (DUF607) |
Chr1_-_11328818 | 0.27 |
AT1G31650.2
|
ROPGEF14
|
RHO guanyl-nucleotide exchange factor 14 |
Chr3_-_2067417 | 0.27 |
AT3G06620.1
|
AT3G06620
|
PAS domain-containing protein tyrosine kinase family protein |
Chr1_-_24657638 | 0.27 |
AT1G66200.2
AT1G66200.3 AT1G66200.1 |
GSR2
|
hypothetical protein |
Chr5_+_2716313 | 0.27 |
AT5G08430.1
|
AT5G08430
|
SWIB/MDM2 and Plus-3 and GYF domain-containing protein |
Chr4_-_8794433 | 0.27 |
AT4G15390.1
AT4G15390.2 |
AT4G15390
|
HXXXD-type acyl-transferase family protein |
Chr1_-_10184512 | 0.27 |
AT1G29160.1
|
AT1G29160
|
Dof-type zinc finger DNA-binding family protein |
Chr3_-_5045520 | 0.26 |
AT3G14980.4
AT3G14980.5 AT3G14980.2 AT3G14980.1 AT3G14980.3 |
ROS4
|
Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein |
Chr1_+_26782048 | 0.26 |
AT1G71010.1
|
FAB1C
|
FORMS APLOID AND BINUCLEATE CELLS 1C |
Chr4_+_14678096 | 0.26 |
AT4G30020.4
|
AT4G30020
|
PA-domain containing subtilase family protein |
Chr1_+_6224405 | 0.26 |
AT1G18090.1
AT1G18090.2 |
AT1G18090
|
5'-3' exonuclease family protein |
Chr3_+_8152038 | 0.26 |
AT3G22970.2
AT3G22970.1 |
AT3G22970
|
hypothetical protein (DUF506) |
Chr1_-_24996117 | 0.25 |
AT1G66970.2
AT1G66970.3 AT1G66970.1 |
SVL2
|
SHV3-like 2 |
Chr1_+_19180744 | 0.25 |
AT1G51720.1
AT1G51720.2 |
AT1G51720
|
Amino acid dehydrogenase family protein |
Chr1_+_19181031 | 0.25 |
AT1G51720.4
AT1G51720.3 |
AT1G51720
|
Amino acid dehydrogenase family protein |
Chr2_-_17720366 | 0.25 |
AT2G42570.1
|
TBL39
|
TRICHOME BIREFRINGENCE-LIKE 39 |
Chr1_+_26093026 | 0.25 |
AT1G69420.2
AT1G69420.1 |
AT1G69420
|
DHHC-type zinc finger family protein |
Chr5_-_1866433 | 0.25 |
AT5G06160.1
|
ATO
|
splicing factor-like protein |
Chr1_+_28086800 | 0.24 |
AT1G74750.4
|
AT1G74750
|
Pentatricopeptide repeat (PPR) superfamily protein |
Chr3_-_596496 | 0.24 |
AT3G02750.1
AT3G02750.2 |
AT3G02750
|
Protein phosphatase 2C family protein |
Chr5_+_22817480 | 0.24 |
AT5G56340.1
|
ATCRT1
|
RING/U-box superfamily protein |
Chr3_-_8741725 | 0.24 |
AT3G24180.2
AT3G24180.1 |
AT3G24180
|
Beta-glucosidase, GBA2 type family protein |
Chr3_-_2189387 | 0.24 |
AT3G06930.2
AT3G06930.1 |
PRMT4B
|
protein arginine methyltransferase 4B |
Chr1_-_29468376 | 0.23 |
AT1G78320.2
AT1G78320.1 |
GSTU23
|
glutathione S-transferase TAU 23 |
Chr3_+_19429686 | 0.23 |
AT3G52420.1
|
OEP7
|
outer envelope membrane protein 7 |
Chr5_-_21362160 | 0.23 |
AT5G52660.1
AT5G52660.2 |
AT5G52660
|
Homeodomain-like superfamily protein |
Chr3_-_595755 | 0.23 |
AT3G02750.3
|
AT3G02750
|
Protein phosphatase 2C family protein |
Chr2_-_14200674 | 0.23 |
AT2G33530.1
|
scpl46
|
serine carboxypeptidase-like 46 |
Chr5_+_9803647 | 0.23 |
AT5G27690.1
|
AT5G27690
|
Heavy metal transport/detoxification superfamily protein |
Chr1_-_25095526 | 0.22 |
AT1G67120.2
AT1G67120.1 |
AT1G67120
|
midasin-like protein |
Chr2_+_6733534 | 0.22 |
AT2G15430.2
AT2G15430.1 AT2G15430.3 |
NRPB3
|
DNA-directed RNA polymerase family protein |
Chr5_+_19683809 | 0.22 |
AT5G48560.1
AT5G48560.2 |
AT5G48560
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Chr3_-_21024131 | 0.22 |
AT3G56760.1
|
AT3G56760
|
Protein kinase superfamily protein |
Chr3_+_7567565 | 0.22 |
AT3G21480.1
|
AT3G21480
|
BRCT domain-containing DNA repair protein |
Chr1_-_11330791 | 0.22 |
AT1G31650.1
|
ROPGEF14
|
RHO guanyl-nucleotide exchange factor 14 |
Chr5_-_6338209 | 0.22 |
AT5G18980.1
AT5G18980.2 |
AT5G18980
|
ARM repeat superfamily protein |
Chr4_-_12078877 | 0.22 |
AT4G23040.1
|
AT4G23040
|
Ubiquitin-like superfamily protein |
Chr4_+_12488040 | 0.22 |
AT4G24040.1
|
TRE1
|
trehalase 1 |
Chr1_+_23082036 | 0.22 |
AT1G62380.1
|
ACO2
|
ACC oxidase 2 |
Chr5_+_17610972 | 0.22 |
AT5G43810.2
AT5G43810.3 |
AGO10
|
Stabilizer of iron transporter SufD / Polynucleotidyl transferase |
Chr2_+_12363426 | 0.22 |
AT2G28810.2
AT2G28810.1 |
AT2G28810
|
Dof-type zinc finger DNA-binding family protein |
Chr4_-_11021272 | 0.21 |
AT4G20430.2
AT4G20430.1 AT4G20430.3 |
AT4G20430
|
Subtilase family protein |
Chr5_+_26836139 | 0.21 |
AT5G67260.1
AT5G67260.2 |
CYCD3%3B2
|
CYCLIN D3;2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.8 | GO:0035865 | cellular response to potassium ion(GO:0035865) |
0.1 | 0.4 | GO:0015904 | tetracycline transport(GO:0015904) antibiotic transport(GO:0042891) |
0.1 | 0.4 | GO:0043132 | NAD transport(GO:0043132) |
0.1 | 0.4 | GO:0010377 | guard cell fate commitment(GO:0010377) response to low humidity(GO:0090547) |
0.1 | 0.4 | GO:0035019 | somatic stem cell population maintenance(GO:0035019) |
0.1 | 0.9 | GO:0006542 | glutamine biosynthetic process(GO:0006542) |
0.1 | 0.9 | GO:0048579 | negative regulation of long-day photoperiodism, flowering(GO:0048579) |
0.1 | 0.5 | GO:0006537 | glutamate biosynthetic process(GO:0006537) |
0.1 | 0.2 | GO:0045694 | regulation of embryo sac egg cell differentiation(GO:0045694) |
0.1 | 0.4 | GO:0080121 | AMP transport(GO:0080121) |
0.1 | 0.2 | GO:0007639 | tissue homeostasis(GO:0001894) homeostasis of number of meristem cells(GO:0007639) homeostasis of number of cells(GO:0048872) homeostasis of number of cells within a tissue(GO:0048873) |
0.1 | 0.2 | GO:0019919 | peptidyl-arginine methylation, to asymmetrical-dimethyl arginine(GO:0019919) histone arginine methylation(GO:0034969) peptidyl-arginine N-methylation(GO:0035246) peptidyl-arginine omega-N-methylation(GO:0035247) |
0.1 | 0.3 | GO:0010606 | positive regulation of cytoplasmic mRNA processing body assembly(GO:0010606) |
0.1 | 0.3 | GO:0030643 | cellular phosphate ion homeostasis(GO:0030643) cellular trivalent inorganic anion homeostasis(GO:0072502) |
0.1 | 0.2 | GO:0044154 | histone H3-K14 acetylation(GO:0044154) |
0.1 | 0.2 | GO:0019377 | glycosylceramide metabolic process(GO:0006677) glucosylceramide metabolic process(GO:0006678) glucosylceramide catabolic process(GO:0006680) glycosphingolipid metabolic process(GO:0006687) glycolipid catabolic process(GO:0019377) glycosylceramide catabolic process(GO:0046477) glycosphingolipid catabolic process(GO:0046479) ceramide catabolic process(GO:0046514) |
0.1 | 1.4 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
0.1 | 2.5 | GO:0048506 | regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510) |
0.1 | 0.2 | GO:0009727 | detection of ethylene stimulus(GO:0009727) |
0.1 | 0.2 | GO:0015742 | alpha-ketoglutarate transport(GO:0015742) |
0.1 | 1.2 | GO:0000103 | sulfate assimilation(GO:0000103) |
0.0 | 0.1 | GO:0017145 | stem cell division(GO:0017145) |
0.0 | 0.8 | GO:0010555 | response to mannitol(GO:0010555) |
0.0 | 0.2 | GO:0009590 | detection of gravity(GO:0009590) |
0.0 | 0.1 | GO:0040030 | regulation of molecular function, epigenetic(GO:0040030) negative regulation of molecular function, epigenetic(GO:0045857) |
0.0 | 0.4 | GO:0016973 | poly(A)+ mRNA export from nucleus(GO:0016973) |
0.0 | 0.2 | GO:0009647 | skotomorphogenesis(GO:0009647) |
0.0 | 0.4 | GO:0071051 | polyadenylation-dependent snoRNA 3'-end processing(GO:0071051) |
0.0 | 0.2 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
0.0 | 0.4 | GO:0006490 | oligosaccharide-lipid intermediate biosynthetic process(GO:0006490) |
0.0 | 0.3 | GO:0090158 | endoplasmic reticulum membrane organization(GO:0090158) |
0.0 | 0.9 | GO:0042026 | protein refolding(GO:0042026) |
0.0 | 0.4 | GO:0050688 | regulation of immune effector process(GO:0002697) regulation of defense response to virus(GO:0050688) |
0.0 | 0.3 | GO:1904030 | negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030) |
0.0 | 0.9 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
0.0 | 0.1 | GO:0046901 | tetrahydrofolylpolyglutamate biosynthetic process(GO:0046901) |
0.0 | 0.1 | GO:0009855 | determination of bilateral symmetry(GO:0009855) |
0.0 | 0.4 | GO:0090502 | RNA phosphodiester bond hydrolysis, endonucleolytic(GO:0090502) |
0.0 | 0.4 | GO:0048359 | mucilage metabolic process involved in seed coat development(GO:0048359) |
0.0 | 0.3 | GO:0052803 | histidine biosynthetic process(GO:0000105) histidine metabolic process(GO:0006547) imidazole-containing compound metabolic process(GO:0052803) |
0.0 | 0.3 | GO:0010105 | negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298) |
0.0 | 0.3 | GO:0033962 | cytoplasmic mRNA processing body assembly(GO:0033962) |
0.0 | 0.2 | GO:0006183 | GTP biosynthetic process(GO:0006183) |
0.0 | 0.6 | GO:0006012 | galactose metabolic process(GO:0006012) |
0.0 | 0.1 | GO:0019264 | L-serine catabolic process(GO:0006565) glycine biosynthetic process from serine(GO:0019264) response to tetrahydrofolate(GO:1904481) cellular response to tetrahydrofolate(GO:1904482) |
0.0 | 0.2 | GO:0043966 | histone H3 acetylation(GO:0043966) |
0.0 | 0.4 | GO:0009785 | blue light signaling pathway(GO:0009785) intracellular receptor signaling pathway(GO:0030522) |
0.0 | 0.2 | GO:0052548 | negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548) |
0.0 | 0.0 | GO:0010372 | positive regulation of gibberellin biosynthetic process(GO:0010372) |
0.0 | 0.5 | GO:0010499 | proteasomal ubiquitin-independent protein catabolic process(GO:0010499) |
0.0 | 0.2 | GO:0007143 | female meiotic division(GO:0007143) |
0.0 | 0.5 | GO:0050826 | response to freezing(GO:0050826) |
0.0 | 0.2 | GO:0046352 | disaccharide catabolic process(GO:0046352) |
0.0 | 0.4 | GO:0046856 | phosphatidylinositol dephosphorylation(GO:0046856) |
0.0 | 0.3 | GO:0010103 | stomatal complex morphogenesis(GO:0010103) |
0.0 | 0.1 | GO:0018202 | peptidyl-diphthamide metabolic process(GO:0017182) peptidyl-diphthamide biosynthetic process from peptidyl-histidine(GO:0017183) peptidyl-histidine modification(GO:0018202) |
0.0 | 0.3 | GO:0065001 | polarity specification of adaxial/abaxial axis(GO:0009944) specification of axis polarity(GO:0065001) |
0.0 | 0.4 | GO:0080092 | regulation of pollen tube growth(GO:0080092) |
0.0 | 0.2 | GO:0010375 | stomatal complex patterning(GO:0010375) |
0.0 | 0.2 | GO:0048497 | maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497) |
0.0 | 0.1 | GO:0080119 | ER body organization(GO:0080119) |
0.0 | 0.2 | GO:0048826 | cotyledon morphogenesis(GO:0048826) |
0.0 | 0.3 | GO:0046854 | lipid phosphorylation(GO:0046834) phosphatidylinositol phosphorylation(GO:0046854) |
0.0 | 0.0 | GO:0031468 | nuclear envelope reassembly(GO:0031468) |
0.0 | 0.8 | GO:0010114 | response to red light(GO:0010114) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.4 | GO:0005655 | nucleolar ribonuclease P complex(GO:0005655) multimeric ribonuclease P complex(GO:0030681) |
0.1 | 0.3 | GO:0034663 | endoplasmic reticulum chaperone complex(GO:0034663) |
0.1 | 0.2 | GO:0005775 | vacuolar lumen(GO:0005775) |
0.1 | 0.3 | GO:1990124 | messenger ribonucleoprotein complex(GO:1990124) |
0.0 | 0.7 | GO:0031359 | intrinsic component of plastid outer membrane(GO:0031354) integral component of plastid outer membrane(GO:0031355) intrinsic component of chloroplast outer membrane(GO:0031358) integral component of chloroplast outer membrane(GO:0031359) |
0.0 | 0.3 | GO:0030014 | CCR4-NOT complex(GO:0030014) |
0.0 | 0.4 | GO:0000176 | nuclear exosome (RNase complex)(GO:0000176) |
0.0 | 0.3 | GO:0005688 | U6 snRNP(GO:0005688) |
0.0 | 0.8 | GO:0005764 | lysosome(GO:0005764) |
0.0 | 0.1 | GO:0000791 | euchromatin(GO:0000791) |
0.0 | 0.2 | GO:0000418 | DNA-directed RNA polymerase IV complex(GO:0000418) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.5 | GO:0046480 | galactolipid galactosyltransferase activity(GO:0046480) |
0.2 | 0.5 | GO:0016504 | peptidase activator activity(GO:0016504) |
0.2 | 1.4 | GO:0009979 | 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979) |
0.1 | 0.7 | GO:0004441 | inositol-1,4-bisphosphate 1-phosphatase activity(GO:0004441) |
0.1 | 0.9 | GO:0004356 | glutamate-ammonia ligase activity(GO:0004356) |
0.1 | 0.5 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330) |
0.1 | 0.4 | GO:0008493 | tetracycline transporter activity(GO:0008493) toxin transporter activity(GO:0019534) antibiotic transporter activity(GO:0042895) |
0.1 | 0.3 | GO:0008661 | 1-deoxy-D-xylulose-5-phosphate synthase activity(GO:0008661) |
0.1 | 0.3 | GO:0017070 | U6 snRNA binding(GO:0017070) |
0.1 | 0.3 | GO:0046537 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity(GO:0046537) |
0.1 | 0.4 | GO:0004781 | sulfate adenylyltransferase (ATP) activity(GO:0004781) |
0.1 | 0.4 | GO:0080122 | AMP transmembrane transporter activity(GO:0080122) |
0.1 | 0.2 | GO:0015026 | coreceptor activity(GO:0015026) |
0.1 | 0.2 | GO:0016277 | [myelin basic protein]-arginine N-methyltransferase activity(GO:0016277) |
0.1 | 0.3 | GO:0004400 | histidinol-phosphate transaminase activity(GO:0004400) |
0.1 | 0.2 | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
0.1 | 0.2 | GO:0050736 | O-malonyltransferase activity(GO:0050736) |
0.1 | 0.2 | GO:0019779 | Atg8 ligase activity(GO:0019776) Atg8 activating enzyme activity(GO:0019779) |
0.1 | 0.4 | GO:0004376 | glycolipid mannosyltransferase activity(GO:0004376) |
0.1 | 0.2 | GO:0004348 | glucosylceramidase activity(GO:0004348) |
0.1 | 0.7 | GO:0002020 | protease binding(GO:0002020) |
0.1 | 0.4 | GO:0070696 | transmembrane receptor protein serine/threonine kinase binding(GO:0070696) |
0.1 | 0.5 | GO:0016639 | oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor(GO:0016639) |
0.0 | 0.4 | GO:0004526 | ribonuclease P activity(GO:0004526) |
0.0 | 0.2 | GO:0047780 | citrate dehydratase activity(GO:0047780) |
0.0 | 0.4 | GO:0035198 | miRNA binding(GO:0035198) |
0.0 | 0.5 | GO:0003730 | mRNA 3'-UTR binding(GO:0003730) |
0.0 | 0.6 | GO:0003978 | UDP-glucose 4-epimerase activity(GO:0003978) |
0.0 | 0.5 | GO:0047259 | glucomannan 4-beta-mannosyltransferase activity(GO:0047259) |
0.0 | 0.2 | GO:0015141 | succinate transmembrane transporter activity(GO:0015141) |
0.0 | 0.8 | GO:0036002 | pre-mRNA binding(GO:0036002) |
0.0 | 0.3 | GO:0017108 | 5'-flap endonuclease activity(GO:0017108) |
0.0 | 0.9 | GO:0005388 | calcium-transporting ATPase activity(GO:0005388) |
0.0 | 0.5 | GO:0016308 | 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308) |
0.0 | 0.2 | GO:0003680 | AT DNA binding(GO:0003680) |
0.0 | 0.3 | GO:0004861 | cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) protein serine/threonine kinase inhibitor activity(GO:0030291) |
0.0 | 0.4 | GO:0051184 | cofactor transporter activity(GO:0051184) |
0.0 | 0.3 | GO:0016464 | chloroplast protein-transporting ATPase activity(GO:0016464) |
0.0 | 0.3 | GO:0016307 | 1-phosphatidylinositol-3-phosphate 5-kinase activity(GO:0000285) phosphatidylinositol phosphate kinase activity(GO:0016307) |
0.0 | 0.1 | GO:0008686 | GTP cyclohydrolase II activity(GO:0003935) 3,4-dihydroxy-2-butanone-4-phosphate synthase activity(GO:0008686) |
0.0 | 0.2 | GO:0019139 | cytokinin dehydrogenase activity(GO:0019139) |
0.0 | 0.8 | GO:0004724 | magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724) |
0.0 | 0.5 | GO:0005089 | Rho guanyl-nucleotide exchange factor activity(GO:0005089) |
0.0 | 0.4 | GO:0034485 | phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity(GO:0034485) |
0.0 | 0.5 | GO:0042973 | glucan endo-1,3-beta-D-glucosidase activity(GO:0042973) |
0.0 | 0.2 | GO:0010385 | double-stranded methylated DNA binding(GO:0010385) |
0.0 | 0.3 | GO:0008106 | alcohol dehydrogenase (NADP+) activity(GO:0008106) |
0.0 | 0.1 | GO:0004372 | glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905) |
0.0 | 0.3 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
0.0 | 0.1 | GO:0004326 | tetrahydrofolylpolyglutamate synthase activity(GO:0004326) |
0.0 | 0.3 | GO:0010329 | auxin efflux transmembrane transporter activity(GO:0010329) |
0.0 | 0.4 | GO:0045309 | protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219) |
0.0 | 0.1 | GO:0010178 | IAA-amino acid conjugate hydrolase activity(GO:0010178) |
0.0 | 0.2 | GO:0008137 | NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136) |
0.0 | 0.3 | GO:0051787 | misfolded protein binding(GO:0051787) |
0.0 | 0.6 | GO:0080044 | quercetin 7-O-glucosyltransferase activity(GO:0080044) |
0.0 | 0.7 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.0 | 0.9 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.0 | 0.4 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
0.0 | 0.8 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.0 | 0.1 | GO:0004575 | sucrose alpha-glucosidase activity(GO:0004575) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.7 | ST ADRENERGIC | Adrenergic Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.2 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |