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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT4G18960

Z-value: 0.55

Transcription factors associated with AT4G18960

Gene Symbol Gene ID Gene Info
AT4G18960
AT4G18960 K-box region and MADS-box transcription factor family protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AGarTal_v1_Chr4_+_10382856_103828560.097.6e-01Click!

Activity profile of AT4G18960 motif

Sorted Z-values of AT4G18960 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr1_-_4975705 1.63 AT1G14540.1
PER4
Peroxidase superfamily protein
Chr4_+_7439115 1.08 AT4G12550.1
AIR1
Auxin-Induced in Root cultures 1
Chr2_+_11773187 0.54 AT2G27550.1
ATC
centroradiali
Chr1_+_27759941 0.44 AT1G73830.1
AT1G73830.2
BEE3
BR enhanced expression 3
Chr5_-_7496990 0.43 AT5G22570.1
WRKY38
WRKY DNA-binding protein 38
Chr3_-_20121314 0.40 AT3G54340.1
AP3
K-box region and MADS-box transcription factor family protein
Chr1_-_8596098 0.39 AT1G24260.2
AT1G24260.3
AT1G24260.1
SEP3
K-box region and MADS-box transcription factor family protein
Chr2_+_17820114 0.36 AT2G42830.1
AT2G42830.2
SHP2
K-box region and MADS-box transcription factor family protein
Chr4_+_10382856 0.34 AT4G18960.2
AT4G18960.4
AT4G18960.1
AT4G18960.3
AG
K-box region and MADS-box transcription factor family protein
Chr4_-_17316374 0.33 AT4G36740.2
AT4G36740.1
HB40
homeobox protein 40
Chr2_-_7810811 0.32 AT2G17950.1
WUS
Homeodomain-like superfamily protein
Chr4_+_11480321 0.32 AT4G21590.1
AT4G21590.2
ENDO3
endonuclease 3
Chr5_+_16370368 0.31 AT5G40860.2
AT5G40860.1
AT5G40860
transmembrane protein
Chr5_-_3876990 0.30 AT5G12000.2
AT5G12000.1
AT5G12000
kinase with adenine nucleotide alpha hydrolases-like domain-containing protein
Chr2_+_6801803 0.28 AT2G15590.2
AT2G15590.1
AT2G15590
spire, putative (DUF1685)
Chr3_+_8242256 0.28 AT3G23130.1
SUP
C2H2 and C2HC zinc fingers superfamily protein
Chr2_+_13396042 0.26 AT2G31430.1
PMEI5
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr2_-_761013 0.26 AT2G02710.2
AT2G02710.3
AT2G02710.4
AT2G02710.1
PLPB
PAS/LOV protein B
Chr4_-_12027421 0.25 AT4G22950.3
AGL19
AGAMOUS-like 19
Chr3_+_5800272 0.24 AT3G17010.1
REM22
AP2/B3-like transcriptional factor family protein
Chr4_+_5811115 0.23 AT4G09100.1
AT4G09100
RING/U-box superfamily protein
Chr1_+_415074 0.23 AT1G02190.1
AT1G02190.2
AT1G02190
Fatty acid hydroxylase superfamily
Chr3_-_11009413 0.21 AT3G29020.1
AT3G29020.2
MYB110
myb domain protein 110
Chr4_-_12028004 0.20 AT4G22950.1
AT4G22950.2
AGL19
AGAMOUS-like 19
Chr1_+_17504714 0.19 AT1G47610.1
AT1G47610
Transducin/WD40 repeat-like superfamily protein
Chr3_+_3447568 0.18 AT3G11000.1
AT3G11000.2
AT3G11000
DCD (Development and Cell Death) domain protein
Chr1_-_26009141 0.16 AT1G69180.1
CRC
Plant-specific transcription factor YABBY family protein
Chr5_+_13596824 0.15 AT5G35390.1
PRK1
Leucine-rich repeat protein kinase family protein
Chr5_-_15834420 0.11 AT5G39540.1
AT5G39540
F-box associated ubiquitination effector family protein
Chr4_-_17838621 0.09 AT4G37940.4
AGL21
AGAMOUS-like 21
Chr4_-_17837584 0.06 AT4G37940.2
AGL21
AGAMOUS-like 21
Chr4_+_959964 0.05 AT4G02180.1
AT4G02180
DC1 domain-containing protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G18960

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0048832 specification of organ number(GO:0048832) specification of floral organ number(GO:0048833)
0.1 0.2 GO:0010254 nectary development(GO:0010254)
0.0 0.7 GO:0010093 specification of floral organ identity(GO:0010093)
0.0 0.3 GO:0090506 axillary shoot meristem initiation(GO:0090506)
0.0 0.3 GO:0006308 DNA catabolic process(GO:0006308)
0.0 0.3 GO:0048497 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.0 0.5 GO:0010048 vernalization response(GO:0010048)
0.0 1.1 GO:0010101 post-embryonic root morphogenesis(GO:0010101) lateral root morphogenesis(GO:0010102)
0.0 0.5 GO:0009910 negative regulation of flower development(GO:0009910)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0043765 T/G mismatch-specific endonuclease activity(GO:0043765)
0.0 1.6 GO:0004601 peroxidase activity(GO:0004601)