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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G18890
Z-value: 0.92
Transcription factors associated with AT4G18890
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G18890
|
AT4G18890 | BES1/BZR1 homolog 3 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| BEH3 | arTal_v1_Chr4_+_10352386_10352386 | -0.69 | 6.2e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_3288087_3288087 Show fit | 1.07 |
AT1G10070.3
AT1G10070.2 AT1G10070.1 |
branched-chain amino acid transaminase 2 |
|
| arTal_v1_Chr1_+_18542061_18542061 Show fit | 0.80 |
AT1G50040.1
|
formin-like protein, putative (DUF1005) |
|
| arTal_v1_Chr1_+_5274271_5274271 Show fit | 0.73 |
AT1G15330.1
|
Cystathionine beta-synthase (CBS) protein |
|
| arTal_v1_Chr5_+_22716917_22716917 Show fit | 0.71 |
AT5G56100.1
|
glycine-rich protein / oleosin |
|
| arTal_v1_Chr5_+_26266180_26266266 Show fit | 0.66 |
AT5G65690.1
AT5G65690.2 AT5G65690.3 AT5G65690.4 |
phosphoenolpyruvate carboxykinase 2 |
|
| arTal_v1_Chr4_+_15230008_15230008 Show fit | 0.62 |
AT4G31380.1
|
flowering-promoting factor-like protein |
|
| arTal_v1_Chr1_+_26400694_26400790 Show fit | 0.61 |
AT1G70090.1
AT1G70090.2 |
glucosyl transferase family 8 |
|
| arTal_v1_Chr1_-_1559917_1559917 Show fit | 0.59 |
AT1G05340.1
|
cysteine-rich TM module stress tolerance protein |
|
| arTal_v1_Chr2_+_13658888_13659004 Show fit | 0.58 |
AT2G32150.1
AT2G32150.2 AT2G32150.3 |
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
|
| arTal_v1_Chr1_-_30202349_30202349 Show fit | 0.57 |
AT1G80340.1
|
gibberellin 3-oxidase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G18890
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.3 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
| 0.2 | 1.1 | GO:0009099 | valine biosynthetic process(GO:0009099) |
| 0.1 | 0.9 | GO:0080163 | regulation of protein serine/threonine phosphatase activity(GO:0080163) |
| 0.0 | 0.8 | GO:0009686 | gibberellin biosynthetic process(GO:0009686) |
| 0.1 | 0.7 | GO:0042149 | cellular response to glucose starvation(GO:0042149) |
| 0.1 | 0.7 | GO:1904276 | regulation of wax biosynthetic process(GO:1904276) positive regulation of wax biosynthetic process(GO:1904278) |
| 0.0 | 0.7 | GO:0019915 | lipid storage(GO:0019915) |
| 0.0 | 0.7 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.1 | 0.6 | GO:0080065 | 4-alpha-methyl-delta7-sterol oxidation(GO:0080065) |
| 0.0 | 0.6 | GO:0009958 | positive gravitropism(GO:0009958) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.2 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 0.7 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.2 | 0.5 | GO:0034274 | Atg12-Atg5-Atg16 complex(GO:0034274) |
| 0.0 | 0.5 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 0.4 | GO:0031355 | intrinsic component of plastid outer membrane(GO:0031354) integral component of plastid outer membrane(GO:0031355) intrinsic component of chloroplast outer membrane(GO:0031358) integral component of chloroplast outer membrane(GO:0031359) |
| 0.0 | 0.2 | GO:0019773 | proteasome core complex, alpha-subunit complex(GO:0019773) |
| 0.0 | 0.1 | GO:0031417 | N-terminal protein acetyltransferase complex(GO:0031414) NatC complex(GO:0031417) |
| 0.0 | 0.1 | GO:0005687 | U4 snRNP(GO:0005687) |
| 0.0 | 0.1 | GO:0071556 | integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) lumenal side of membrane(GO:0098576) |
| 0.0 | 0.1 | GO:0098554 | integral component of cytoplasmic side of endoplasmic reticulum membrane(GO:0071458) cytoplasmic side of endoplasmic reticulum membrane(GO:0098554) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.3 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
| 0.2 | 1.1 | GO:0052656 | L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656) |
| 0.0 | 0.9 | GO:0004864 | protein phosphatase inhibitor activity(GO:0004864) |
| 0.2 | 0.7 | GO:0016707 | gibberellin 3-beta-dioxygenase activity(GO:0016707) |
| 0.1 | 0.7 | GO:0004679 | AMP-activated protein kinase activity(GO:0004679) |
| 0.1 | 0.7 | GO:0003680 | AT DNA binding(GO:0003680) |
| 0.1 | 0.6 | GO:0004611 | phosphoenolpyruvate carboxykinase activity(GO:0004611) |
| 0.1 | 0.6 | GO:0000254 | C-4 methylsterol oxidase activity(GO:0000254) |
| 0.0 | 0.6 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.1 | 0.5 | GO:0045549 | 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.3 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.0 | 0.1 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.1 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |