Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT4G18880
Z-value: 0.69
Transcription factors associated with AT4G18880
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G18880
|
AT4G18880 | heat shock transcription factor A4A |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HSF A4A | arTal_v1_Chr4_-_10349902_10349902 | 0.14 | 6.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_21453980_21453980 Show fit | 0.74 |
AT5G52900.1
|
membrane-associated kinase regulator |
|
| arTal_v1_Chr2_+_3618058_3618058 Show fit | 0.45 |
AT2G08986.1
|
hypothetical protein |
|
| arTal_v1_Chr5_-_22133688_22133688 Show fit | 0.42 |
AT5G54510.1
|
Auxin-responsive GH3 family protein |
|
| arTal_v1_Chr1_-_4526204_4526204 Show fit | 0.37 |
AT1G13245.1
|
ROTUNDIFOLIA like 17 |
|
| arTal_v1_Chr2_-_13042586_13042586 Show fit | 0.37 |
AT2G30615.1
|
F-box/LRR protein |
|
| arTal_v1_Chr4_-_11519805_11519805 Show fit | 0.34 |
AT4G21680.1
|
NITRATE TRANSPORTER 1.8 |
|
| arTal_v1_Chr4_-_14627631_14627631 Show fit | 0.32 |
AT4G29905.1
|
hypothetical protein |
|
| arTal_v1_Chr5_-_2951701_2951701 Show fit | 0.32 |
AT5G09480.1
|
hydroxyproline-rich glycoprotein family protein |
|
| arTal_v1_Chr2_+_18253610_18253610 Show fit | 0.30 |
AT2G44130.1
|
Galactose oxidase/kelch repeat superfamily protein |
|
| arTal_v1_Chr3_+_6313471_6313471 Show fit | 0.30 |
AT3G18390.1
|
CRS1 / YhbY (CRM) domain-containing protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G18880
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | GO:0090065 | regulation of production of siRNA involved in RNA interference(GO:0090065) |
| 0.0 | 0.4 | GO:0046219 | tryptophan biosynthetic process(GO:0000162) indolalkylamine biosynthetic process(GO:0046219) |
| 0.0 | 0.4 | GO:0010252 | auxin homeostasis(GO:0010252) |
| 0.1 | 0.3 | GO:0071596 | ubiquitin-dependent protein catabolic process via the N-end rule pathway(GO:0071596) |
| 0.1 | 0.3 | GO:0071242 | cellular response to ammonium ion(GO:0071242) |
| 0.1 | 0.3 | GO:0009211 | deoxyribonucleoside triphosphate biosynthetic process(GO:0009202) pyrimidine deoxyribonucleoside triphosphate metabolic process(GO:0009211) pyrimidine deoxyribonucleotide metabolic process(GO:0009219) pyrimidine deoxyribonucleotide biosynthetic process(GO:0009221) 2'-deoxyribonucleotide biosynthetic process(GO:0009265) deoxyribose phosphate biosynthetic process(GO:0046385) |
| 0.0 | 0.3 | GO:0051553 | flavone biosynthetic process(GO:0051553) flavonol biosynthetic process(GO:0051555) |
| 0.0 | 0.3 | GO:0009697 | salicylic acid biosynthetic process(GO:0009697) |
| 0.1 | 0.2 | GO:0046704 | CDP metabolic process(GO:0046704) CDP biosynthetic process(GO:0046705) |
| 0.0 | 0.2 | GO:0006428 | isoleucyl-tRNA aminoacylation(GO:0006428) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | GO:0070390 | transcription export complex 2(GO:0070390) |
| 0.0 | 0.2 | GO:0031965 | nuclear membrane(GO:0031965) |
| 0.0 | 0.1 | GO:0009501 | amyloplast(GO:0009501) |
| 0.0 | 0.1 | GO:0031932 | TORC2 complex(GO:0031932) |
| 0.0 | 0.1 | GO:0032155 | equatorial microtubule organizing center(GO:0000923) gamma-tubulin large complex(GO:0000931) gamma-tubulin ring complex(GO:0008274) cell division site part(GO:0032155) |
| 0.0 | 0.1 | GO:0031414 | N-terminal protein acetyltransferase complex(GO:0031414) NatC complex(GO:0031417) |
| 0.0 | 0.1 | GO:0005968 | Rab-protein geranylgeranyltransferase complex(GO:0005968) |
| 0.0 | 0.1 | GO:0005776 | autophagosome(GO:0005776) |
| 0.0 | 0.1 | GO:0089701 | U2AF(GO:0089701) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | GO:0009041 | uridylate kinase activity(GO:0009041) |
| 0.1 | 0.4 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.0 | 0.3 | GO:0045431 | flavonol synthase activity(GO:0045431) |
| 0.1 | 0.2 | GO:0008661 | 1-deoxy-D-xylulose-5-phosphate synthase activity(GO:0008661) |
| 0.0 | 0.2 | GO:0004048 | anthranilate phosphoribosyltransferase activity(GO:0004048) |
| 0.0 | 0.2 | GO:0004049 | anthranilate synthase activity(GO:0004049) |
| 0.0 | 0.2 | GO:0004822 | isoleucine-tRNA ligase activity(GO:0004822) |
| 0.0 | 0.2 | GO:0003872 | 6-phosphofructokinase activity(GO:0003872) |
| 0.0 | 0.2 | GO:0016314 | phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity(GO:0016314) |
| 0.0 | 0.2 | GO:0070567 | cytidylyltransferase activity(GO:0070567) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.0 | 0.1 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.0 | 0.1 | PID BARD1 PATHWAY | BARD1 signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | REACTOME MTORC1 MEDIATED SIGNALLING | Genes involved in mTORC1-mediated signalling |
| 0.0 | 0.1 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.0 | 0.1 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
| 0.0 | 0.1 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.0 | 0.0 | REACTOME TRANSPORT OF MATURE TRANSCRIPT TO CYTOPLASM | Genes involved in Transport of Mature Transcript to Cytoplasm |