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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G18880
Z-value: 0.69
Transcription factors associated with AT4G18880
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G18880
|
AT4G18880 | heat shock transcription factor A4A |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HSF A4A | arTal_v1_Chr4_-_10349902_10349902 | 0.14 | 6.4e-01 | Click! |
Activity profile of AT4G18880 motif
Sorted Z-values of AT4G18880 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| Chr5_-_21453980 | 0.74 |
AT5G52900.1
|
MAKR6
|
membrane-associated kinase regulator |
| Chr2_+_3618058 | 0.45 |
AT2G08986.1
|
AT2G08986
|
hypothetical protein |
| Chr5_-_22133688 | 0.42 |
AT5G54510.1
|
DFL1
|
Auxin-responsive GH3 family protein |
| Chr1_-_4526204 | 0.37 |
AT1G13245.1
|
RTFL17
|
ROTUNDIFOLIA like 17 |
| Chr2_-_13042586 | 0.37 |
AT2G30615.1
|
AT2G30615
|
F-box/LRR protein |
| Chr4_-_11519805 | 0.34 |
AT4G21680.1
|
NRT1.8
|
NITRATE TRANSPORTER 1.8 |
| Chr4_-_14627631 | 0.32 |
AT4G29905.1
|
AT4G29905
|
hypothetical protein |
| Chr5_-_2951701 | 0.32 |
AT5G09480.1
|
AT5G09480
|
hydroxyproline-rich glycoprotein family protein |
| Chr2_+_18253610 | 0.30 |
AT2G44130.1
|
AT2G44130
|
Galactose oxidase/kelch repeat superfamily protein |
| Chr3_+_6313471 | 0.30 |
AT3G18390.1
|
EMB1865
|
CRS1 / YhbY (CRM) domain-containing protein |
| Chr2_-_19114173 | 0.30 |
AT2G46550.3
AT2G46550.1 AT2G46550.2 |
AT2G46550
|
transmembrane protein |
| Chr5_+_6457026 | 0.29 |
AT5G19190.1
|
AT5G19190
|
hypothetical protein |
| Chr1_-_7553975 | 0.29 |
AT1G21550.1
|
AT1G21550
|
Calcium-binding EF-hand family protein |
| Chr5_-_25458639 | 0.29 |
AT5G63590.1
|
FLS3
|
flavonol synthase 3 |
| Chr1_+_4461738 | 0.28 |
AT1G13090.1
AT1G13090.2 |
CYP71B28
|
cytochrome P450, family 71, subfamily B, polypeptide 28 |
| Chr4_-_3950602 | 0.27 |
AT4G06700.1
|
AT4G06700
|
|
| Chr3_-_9911616 | 0.26 |
AT3G26890.3
AT3G26890.7 AT3G26890.6 AT3G26890.2 AT3G26890.1 AT3G26890.8 AT3G26890.5 AT3G26890.4 |
AT3G26890
|
meiosis chromosome segregation family protein |
| Chr1_+_6352325 | 0.26 |
AT1G18460.1
|
AT1G18460
|
alpha/beta-Hydrolases superfamily protein |
| Chr5_+_16043727 | 0.26 |
AT5G40100.1
|
AT5G40100
|
Disease resistance protein (TIR-NBS-LRR class) family |
| Chr1_+_635144 | 0.25 |
AT1G02860.3
AT1G02860.1 AT1G02860.2 |
NLA
|
SPX (SYG1/Pho81/XPR1) domain-containing protein |
| Chr2_-_17696023 | 0.25 |
AT2G42490.1
|
AT2G42490
|
Copper amine oxidase family protein |
| Chr1_-_23104756 | 0.25 |
AT1G62420.1
|
AT1G62420
|
DUF506 family protein (DUF506) |
| Chr3_-_2407634 | 0.24 |
AT3G07540.1
|
AT3G07540
|
Actin-binding FH2 (formin homology 2) family protein |
| Chr3_-_6901334 | 0.24 |
AT3G19850.1
|
AT3G19850
|
Phototropic-responsive NPH3 family protein |
| Chr1_+_11840910 | 0.23 |
AT1G32730.1
|
AT1G32730
|
electron carrier/iron ion-binding protein |
| Chr5_-_1722910 | 0.22 |
AT5G05730.2
AT5G05730.1 |
ASA1
|
anthranilate synthase alpha subunit 1 |
| Chr3_-_22244061 | 0.22 |
AT3G60180.2
AT3G60180.1 |
AT3G60180
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| Chr5_+_16452598 | 0.22 |
AT5G41110.3
AT5G41110.2 |
AT5G41110
|
meiosis chromosome segregation family protein |
| Chr5_-_20110638 | 0.22 |
AT5G49555.1
|
AT5G49555
|
FAD/NAD(P)-binding oxidoreductase family protein |
| Chr1_-_9406369 | 0.22 |
AT1G27090.1
|
AT1G27090
|
glycine-rich protein |
| Chr5_+_23663136 | 0.22 |
AT5G58540.3
AT5G58540.1 |
AT5G58540
|
Protein kinase superfamily protein |
| Chr5_-_5233036 | 0.21 |
AT5G16023.1
|
RTFL18
|
ROTUNDIFOLIA like 18 |
| Chr3_-_15559710 | 0.21 |
AT3G43654.1
|
AT3G43654
|
|
| Chr3_-_1975754 | 0.21 |
AT3G06440.2
AT3G06440.1 |
AT3G06440
|
Galactosyltransferase family protein |
| Chr1_+_25880323 | 0.21 |
AT1G68840.2
|
RAV2
|
related to ABI3/VP1 2 |
| Chr5_+_23663363 | 0.21 |
AT5G58540.2
|
AT5G58540
|
Protein kinase superfamily protein |
| Chr1_+_25880155 | 0.20 |
AT1G68840.1
|
RAV2
|
related to ABI3/VP1 2 |
| Chr3_+_10498177 | 0.20 |
AT3G28170.1
|
AT3G28170
|
hypothetical protein |
| Chr2_-_19512728 | 0.20 |
AT2G47560.1
|
AT2G47560
|
RING/U-box superfamily protein |
| Chr5_+_24761041 | 0.20 |
AT5G61580.1
AT5G61580.2 |
PFK4
|
phosphofructokinase 4 |
| Chr1_-_2316507 | 0.19 |
AT1G07530.1
|
SCL14
|
SCARECROW-like 14 |
| Chr1_+_3794243 | 0.19 |
AT1G11300.1
AT1G11300.2 |
AT1G11300
|
G-type lectin S-receptor-like Serine/Threonine-kinase |
| Chr2_+_6533687 | 0.19 |
AT2G15080.2
|
RLP19
|
receptor like protein 19 |
| Chr2_-_298215 | 0.19 |
AT2G01670.1
|
NUDT17
|
nudix hydrolase homolog 17 |
| Chr5_+_5957080 | 0.18 |
AT5G17990.1
|
TRP1
|
tryptophan biosynthesis 1 |
| Chr4_+_7932131 | 0.18 |
AT4G13620.1
|
AT4G13620
|
Integrase-type DNA-binding superfamily protein |
| Chr1_+_29103608 | 0.18 |
AT1G77460.3
AT1G77460.2 AT1G77460.1 AT1G77460.4 |
AT1G77460
|
CELLULOSE SYNTHASE INTERACTIVE 3 |
| Chr1_+_12977668 | 0.18 |
AT1G35340.4
AT1G35340.2 AT1G35340.1 AT1G35340.5 AT1G35340.3 AT1G35340.6 AT1G35340.7 |
AT1G35340
|
ATP-dependent protease La (LON) domain protein |
| Chr5_+_8773734 | 0.18 |
AT5G25280.1
AT5G25280.3 AT5G25280.2 |
AT5G25280
|
serine-rich protein-like protein |
| Chr1_+_18061356 | 0.18 |
AT1G48840.1
|
AT1G48840
|
heat-inducible transcription repressor (DUF639) |
| Chr3_+_18733021 | 0.17 |
AT3G50480.2
AT3G50480.1 |
HR4
|
homolog of RPW8 4 |
| Chr1_-_18626441 | 0.17 |
AT1G50280.1
AT1G50280.2 |
AT1G50280
|
Phototropic-responsive NPH3 family protein |
| Chr5_+_801947 | 0.17 |
AT5G03320.2
AT5G03320.1 |
AT5G03320
|
Protein kinase superfamily protein |
| Chr2_+_10890903 | 0.17 |
AT2G25590.1
|
AT2G25590
|
Plant Tudor-like protein |
| Chr1_+_29526861 | 0.17 |
AT1G78490.2
AT1G78490.1 |
CYP708A3
|
cytochrome P450, family 708, subfamily A, polypeptide 3 |
| Chr2_-_10727272 | 0.17 |
AT2G25180.1
|
RR12
|
response regulator 12 |
| Chr4_+_8883825 | 0.17 |
AT4G15560.1
|
CLA1
|
Deoxyxylulose-5-phosphate synthase |
| Chr1_+_20363393 | 0.17 |
AT1G54520.1
|
AT1G54520
|
myelin-associated oligodendrocyte basic protein |
| Chr2_+_6533261 | 0.17 |
AT2G15080.1
|
RLP19
|
receptor like protein 19 |
| Chr4_-_15841643 | 0.16 |
AT4G32820.2
AT4G32820.3 AT4G32820.1 |
AT4G32820
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
| Chr2_-_556131 | 0.16 |
AT2G02160.1
|
AT2G02160
|
CCCH-type zinc finger family protein |
| Chr4_+_5847312 | 0.16 |
AT4G09180.1
|
FBH2
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| Chr1_+_29400140 | 0.16 |
AT1G78130.1
|
UNE2
|
Major facilitator superfamily protein |
| Chr1_+_18730759 | 0.16 |
AT1G50580.1
|
AT1G50580
|
UDP-Glycosyltransferase superfamily protein |
| Chr2_+_16095235 | 0.16 |
AT2G38440.1
|
SCAR2
|
SCAR homolog 2 |
| Chr1_-_21911233 | 0.16 |
AT1G59640.2
AT1G59640.1 |
BPEp
|
transcription factor BIG PETAL P (BPE) |
| Chr1_-_21178974 | 0.15 |
AT1G56520.2
AT1G56520.5 AT1G56520.1 AT1G56520.3 AT1G56520.4 |
AT1G56520
|
Disease resistance protein (TIR-NBS-LRR class) family |
| Chr3_+_6731329 | 0.15 |
AT3G19420.1
|
PEN2
|
PTEN 2 |
| Chr5_+_23971217 | 0.15 |
AT5G59440.1
AT5G59440.3 |
ZEU1
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| Chr4_+_16394600 | 0.15 |
AT4G34250.1
|
KCS16
|
3-ketoacyl-CoA synthase 16 |
| Chr4_-_18464982 | 0.15 |
AT4G39790.1
|
AT4G39790
|
bZIP transcription factor, putative (DUF630 and DUF632) |
| Chr1_-_26076374 | 0.15 |
AT1G69360.1
|
AT1G69360
|
T-box transcription factor, putative (DUF863) |
| Chr3_-_22169984 | 0.15 |
AT3G60030.1
|
SPL12
|
squamosa promoter-binding protein-like 12 |
| Chr1_+_29253332 | 0.15 |
AT1G77800.3
AT1G77800.5 AT1G77800.6 AT1G77800.7 AT1G77800.4 AT1G77800.1 AT1G77800.2 |
AT1G77800
|
PHD finger family protein |
| Chr5_+_473868 | 0.14 |
AT5G02310.1
AT5G02310.2 |
PRT6
|
proteolysis 6 |
| Chr5_+_16451470 | 0.14 |
AT5G41110.1
|
AT5G41110
|
meiosis chromosome segregation family protein |
| Chr4_-_12658332 | 0.14 |
AT4G24490.2
AT4G24490.1 |
RGTA1
|
RAB geranylgeranyl transferase alpha subunit 1 |
| Chr1_-_11801407 | 0.14 |
AT1G32640.1
|
MYC2
|
Basic helix-loop-helix (bHLH) DNA-binding family protein |
| Chr3_+_151725 | 0.14 |
AT3G01400.1
|
AT3G01400
|
ARM repeat superfamily protein |
| Chr4_-_18361182 | 0.14 |
AT4G39470.1
|
AT4G39470
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
| Chr3_-_19935392 | 0.14 |
AT3G53810.1
|
AT3G53810
|
Concanavalin A-like lectin protein kinase family protein |
| Chr1_-_7781179 | 0.14 |
AT1G22060.2
|
AT1G22060
|
sporulation-specific protein |
| Chr5_+_1427117 | 0.14 |
AT5G04890.1
|
RTM2
|
HSP20-like chaperones superfamily protein |
| Chr3_+_16969245 | 0.14 |
AT3G46200.5
AT3G46200.6 |
NUDT9
|
nudix hydrolase homolog 9 |
| Chr2_+_18691664 | 0.14 |
AT2G45340.1
|
AT2G45340
|
Leucine-rich repeat protein kinase family protein |
| Chr4_-_7736745 | 0.14 |
AT4G13280.1
AT4G13280.2 |
TPS12
|
terpenoid synthase 12 |
| Chr4_-_17047315 | 0.14 |
AT4G36030.1
|
ARO3
|
armadillo repeat only 3 |
| Chr3_+_19376138 | 0.13 |
AT3G52250.1
AT3G52250.2 |
AT3G52250
|
Duplicated homeodomain-like superfamily protein |
| Chr4_-_1220934 | 0.13 |
AT4G02740.1
AT4G02740.2 |
AT4G02740
|
F-box/RNI-like superfamily protein |
| Chr2_+_19469571 | 0.13 |
AT2G47440.2
AT2G47440.1 |
AT2G47440
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
| Chr2_+_11000486 | 0.13 |
AT2G25790.1
|
AT2G25790
|
Leucine-rich receptor-like protein kinase family protein |
| Chr1_-_1611815 | 0.13 |
AT1G05470.2
AT1G05470.1 |
CVP2
|
DNAse I-like superfamily protein |
| Chr1_-_7781539 | 0.13 |
AT1G22060.1
|
AT1G22060
|
sporulation-specific protein |
| Chr3_+_4995426 | 0.13 |
AT3G14850.2
|
TBL41
|
TRICHOME BIREFRINGENCE-LIKE 41 |
| Chr3_+_13061048 | 0.13 |
AT3G32047.1
|
AT3G32047
|
Cytochrome P450 superfamily protein |
| Chr5_+_4593198 | 0.13 |
AT5G14230.2
|
AT5G14230
|
ankyrin |
| Chr5_+_474279 | 0.13 |
AT5G02310.3
|
PRT6
|
proteolysis 6 |
| Chr2_-_12651753 | 0.13 |
AT2G29570.1
|
PCNA2
|
proliferating cell nuclear antigen 2 |
| Chr1_-_18539995 | 0.13 |
AT1G50030.1
AT1G50030.2 |
TOR
|
target of rapamycin |
| Chr3_+_3978005 | 0.13 |
AT3G12550.5
AT3G12550.3 AT3G12550.4 AT3G12550.1 AT3G12550.2 |
FDM3
|
XH/XS domain-containing protein |
| Chr1_+_30175642 | 0.13 |
AT1G80260.2
AT1G80260.3 AT1G80260.1 |
emb1427
|
Spc97 / Spc98 family of spindle pole body (SBP) component |
| Chr3_+_16968423 | 0.13 |
AT3G46200.2
AT3G46200.3 AT3G46200.1 AT3G46200.4 |
NUDT9
|
nudix hydrolase homolog 9 |
| Chr5_-_23236572 | 0.13 |
AT5G57350.2
AT5G57350.4 AT5G57350.1 |
HA3
|
H[+]-ATPase 3 |
| Chr2_-_14615733 | 0.13 |
AT2G34670.1
AT2G34670.2 |
AT2G34670
|
benzoyl-CoA reductase subunit C, putative (DUF630 and DUF632) |
| Chr3_+_10796695 | 0.13 |
AT3G28770.1
AT3G28770.2 AT3G28770.3 |
AT3G28770
|
transmembrane protein, putative (DUF1216) |
| Chr2_+_3484830 | 0.12 |
AT2G07806.1
AT2G07806.2 |
AT2G07806
|
hypothetical protein |
| Chr3_-_22915393 | 0.12 |
AT3G61890.1
|
HB-12
|
homeobox 12 |
| Chr2_-_19412328 | 0.12 |
AT2G47270.1
|
UPB1
|
transcription factor UPBEAT protein |
| Chr1_+_15936156 | 0.12 |
AT1G42480.1
AT1G42480.2 AT1G42480.3 |
AT1G42480
|
TLR4 regulator/MIR-interacting MSAP protein |
| Chr4_-_404379 | 0.12 |
AT4G00940.3
|
AT4G00940
|
Dof-type zinc finger DNA-binding family protein |
| Chr5_+_18842553 | 0.12 |
AT5G46470.1
|
RPS6
|
disease resistance protein (TIR-NBS-LRR class) family |
| Chr2_+_19679730 | 0.12 |
AT2G48120.2
AT2G48120.1 |
PAC
|
pale cress protein (PAC) |
| Chr5_+_21848035 | 0.12 |
AT5G53800.1
|
AT5G53800
|
nucleic acid-binding protein |
| Chr2_+_19336653 | 0.12 |
AT2G47070.1
AT2G47070.2 |
SPL1
|
squamosa promoter binding protein-like 1 |
| Chr5_+_24484498 | 0.12 |
AT5G60860.1
|
RABA1f
|
RAB GTPase homolog A1F |
| Chr3_+_9769634 | 0.12 |
AT3G26600.2
AT3G26600.1 |
ARO4
|
armadillo repeat only 4 |
| Chr2_-_1939470 | 0.12 |
AT2G05330.1
AT2G05330.2 |
AT2G05330
|
BTB/POZ domain-containing protein |
| Chr2_-_1934298 | 0.12 |
AT2G05310.1
AT2G05310.2 |
AT2G05310
|
transmembrane protein |
| Chr2_+_8324653 | 0.12 |
AT2G19180.2
AT2G19180.1 |
AT2G19180
|
hypothetical protein |
| Chr5_-_22773021 | 0.12 |
AT5G56250.1
AT5G56250.2 |
HAP8
|
hapless 8 |
| Chr1_-_4571229 | 0.12 |
AT1G13340.1
|
AT1G13340
|
Regulator of Vps4 activity in the MVB pathway protein |
| Chr2_-_7810811 | 0.11 |
AT2G17950.1
|
WUS
|
Homeodomain-like superfamily protein |
| Chr2_-_14190254 | 0.11 |
AT2G33500.1
AT2G33500.2 |
BBX12
|
B-box type zinc finger protein with CCT domain-containing protein |
| Chr1_-_27466348 | 0.11 |
AT1G73010.1
|
PS2
|
inorganic pyrophosphatase 1 |
| Chr2_+_10097265 | 0.11 |
AT2G23740.3
AT2G23740.4 AT2G23740.2 AT2G23740.5 AT2G23740.6 AT2G23740.1 |
SUVR5
|
histone-lysine N-methyltransferase SUVR5 |
| Chr5_-_23234887 | 0.11 |
AT5G57350.3
|
HA3
|
H[+]-ATPase 3 |
| Chr4_-_404670 | 0.11 |
AT4G00940.2
|
AT4G00940
|
Dof-type zinc finger DNA-binding family protein |
| Chr1_-_10561545 | 0.11 |
AT1G30090.1
|
AT1G30090
|
Galactose oxidase/kelch repeat superfamily protein |
| Chr4_-_6976014 | 0.11 |
AT4G11485.1
|
LCR11
|
low-molecular-weight cysteine-rich 11 |
| Chr1_+_4194420 | 0.11 |
AT1G12330.1
|
AT1G12330
|
cyclin-dependent kinase-like protein |
| Chr1_+_19831352 | 0.11 |
AT1G53180.2
AT1G53180.3 AT1G53180.1 |
AT1G53180
|
hypothetical protein |
| Chr4_+_5992908 | 0.11 |
AT4G09460.1
|
MYB6
|
myb domain protein 6 |
| Chr5_+_5916862 | 0.11 |
AT5G17890.1
|
DAR4
|
DA1-related protein 4 |
| Chr5_+_4591690 | 0.11 |
AT5G14230.1
|
AT5G14230
|
ankyrin |
| Chr3_+_20235506 | 0.11 |
AT3G54670.1
|
TTN8
|
Structural maintenance of chromosomes (SMC) family protein |
| Chr3_+_4995941 | 0.11 |
AT3G14850.1
|
TBL41
|
TRICHOME BIREFRINGENCE-LIKE 41 |
| Chr1_-_10212722 | 0.11 |
AT1G29220.1
AT1G29220.2 |
AT1G29220
|
transcriptional regulator family protein |
| Chr3_-_1907448 | 0.11 |
AT3G06290.2
|
SAC3B
|
SAC3/GANP/Nin1/mts3/eIF-3 p25 family |
| Chr5_+_918689 | 0.11 |
AT5G03620.2
AT5G03620.1 |
AT5G03620
|
Subtilisin-like serine endopeptidase family protein |
| Chr5_-_5018347 | 0.11 |
AT5G15450.1
|
CLPB3
|
casein lytic proteinase B3 |
| Chr3_+_18377409 | 0.11 |
AT3G49590.1
AT3G49590.3 AT3G49590.2 |
ATG13
|
Autophagy-related protein 13 |
| Chr5_-_26363488 | 0.11 |
AT5G65910.1
|
AT5G65910
|
BSD domain-containing protein |
| Chr1_-_19747287 | 0.11 |
AT1G53000.1
|
CKS
|
Nucleotide-diphospho-sugar transferases superfamily protein |
| Chr3_-_9712659 | 0.10 |
AT3G26510.3
AT3G26510.7 AT3G26510.2 |
AT3G26510
|
Octicosapeptide/Phox/Bem1p family protein |
| Chr3_+_251868 | 0.10 |
AT3G01680.1
|
SEOR1
|
sieve element occlusion amino-terminus protein |
| Chr2_+_3484627 | 0.10 |
AT2G07806.3
|
AT2G07806
|
hypothetical protein |
| Chr3_-_1907297 | 0.10 |
AT3G06290.1
|
SAC3B
|
SAC3/GANP/Nin1/mts3/eIF-3 p25 family |
| Chr4_-_10325816 | 0.10 |
AT4G18810.2
AT4G18810.1 |
AT4G18810
|
NAD(P)-binding Rossmann-fold superfamily protein |
| Chr1_+_10918267 | 0.10 |
AT1G30760.2
AT1G30760.1 |
AT1G30760
|
FAD-binding Berberine family protein |
| Chr5_+_23971063 | 0.10 |
AT5G59440.2
|
ZEU1
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| Chr1_-_19747804 | 0.10 |
AT1G53000.2
|
CKS
|
Nucleotide-diphospho-sugar transferases superfamily protein |
| Chr1_+_25502864 | 0.10 |
AT1G68040.1
|
AT1G68040
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| Chr5_+_7426310 | 0.10 |
AT5G22410.1
|
RHS18
|
root hair specific 18 |
| Chr5_+_3545211 | 0.10 |
AT5G11140.1
|
AT5G11140
|
phospholipase-like protein (PEARLI 4) family protein |
| Chr2_-_11968712 | 0.10 |
AT2G28085.1
|
AT2G28085
|
SAUR-like auxin-responsive protein family |
| Chr1_-_2982713 | 0.10 |
AT1G09230.1
AT1G09230.3 |
AT1G09230
|
RNA-binding (RRM/RBD/RNP motifs) family protein |
| Chr4_-_404873 | 0.10 |
AT4G00940.1
|
AT4G00940
|
Dof-type zinc finger DNA-binding family protein |
| Chr4_-_11732674 | 0.10 |
AT4G22150.1
|
PUX3
|
UBA/UBX domain protein |
| Chr3_-_9712826 | 0.09 |
AT3G26510.5
AT3G26510.4 AT3G26510.1 AT3G26510.6 |
AT3G26510
|
Octicosapeptide/Phox/Bem1p family protein |
| Chr5_-_8079866 | 0.09 |
AT5G23940.1
|
PEL3
|
HXXXD-type acyl-transferase family protein |
| Chr1_+_7272526 | 0.09 |
AT1G20900.1
|
ESC
|
Putative AT-hook DNA-binding family protein |
| Chr5_-_19882462 | 0.09 |
AT5G49030.2
AT5G49030.1 |
OVA2
|
tRNA synthetase class I (I, L, M and V) family protein |
| Chr5_+_4218786 | 0.09 |
AT5G13220.5
AT5G13220.1 AT5G13220.3 AT5G13220.2 AT5G13220.6 AT5G13220.7 AT5G13220.4 |
JAZ10
|
jasmonate-zim-domain protein 10 |
| Chr4_+_16368087 | 0.09 |
AT4G34170.1
|
AT4G34170
|
Galactose oxidase/kelch repeat superfamily protein |
| Chr1_+_18137977 | 0.09 |
AT1G49032.1
|
AT1G49032
|
hypothetical protein |
| Chr2_+_16540927 | 0.09 |
AT2G39690.4
AT2G39690.3 AT2G39690.5 AT2G39690.7 AT2G39690.6 AT2G39690.8 AT2G39690.1 AT2G39690.2 |
AT2G39690
|
ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) |
| Chr4_-_17197247 | 0.09 |
AT4G36390.1
|
AT4G36390
|
Methylthiotransferase |
| Chr5_+_503408 | 0.09 |
AT5G02370.1
|
AT5G02370
|
ATP binding microtubule motor family protein |
| Chr4_-_9881455 | 0.09 |
AT4G17780.1
|
AT4G17780
|
F-box and associated interaction domains-containing protein |
| Chr1_-_3388373 | 0.09 |
AT1G10320.1
AT1G10320.2 |
AT1G10320
|
Zinc finger C-x8-C-x5-C-x3-H type family protein |
| Chr3_-_980562 | 0.09 |
AT3G03830.1
|
SAUR28
|
SAUR-like auxin-responsive protein family |
| Chr3_+_19115184 | 0.09 |
AT3G51540.2
AT3G51540.1 AT3G51540.3 AT3G51540.4 |
AT3G51540
|
mucin-5AC-like protein |
| Chr2_+_17902370 | 0.09 |
AT2G43050.1
|
ATPMEPCRD
|
Plant invertase/pectin methylesterase inhibitor superfamily |
| Chr5_-_7072966 | 0.08 |
AT5G20850.1
AT5G20850.2 |
RAD51
|
RAS associated with diabetes protein 51 |
| Chr2_-_8719115 | 0.08 |
AT2G20190.1
|
CLASP
|
CLIP-associated protein |
| Chr3_+_8048802 | 0.08 |
AT3G22780.1
|
TSO1
|
Tesmin/TSO1-like CXC domain-containing protein |
| Chr5_-_4071249 | 0.08 |
AT5G12890.1
|
AT5G12890
|
UDP-Glycosyltransferase superfamily protein |
| Chr1_-_11414502 | 0.08 |
AT1G31814.1
|
FRL2
|
FRIGIDA like 2 |
| Chr3_-_1807530 | 0.08 |
AT3G06010.1
|
ATCHR12
|
SNF2/Brahma-type chromatin-remodeling protein CHR12 |
| Chr5_-_23623543 | 0.08 |
AT5G58430.1
|
EXO70B1
|
exocyst subunit exo70 family protein B1 |
| Chr1_-_24324064 | 0.08 |
AT1G65470.2
AT1G65470.1 |
FAS1
|
chromatin assembly factor-1 (FASCIATA1) (FAS1) |
| Chr1_-_20629692 | 0.08 |
AT1G55300.1
AT1G55300.2 |
TAF7
|
TBP-associated factor 7 |
| Chr3_-_3166038 | 0.08 |
AT3G10230.1
AT3G10230.2 |
LYC
|
lycopene cyclase |
| Chr4_+_18240605 | 0.08 |
AT4G39170.2
AT4G39170.1 |
AT4G39170
|
Sec14p-like phosphatidylinositol transfer family protein |
| Chr3_-_17537546 | 0.08 |
AT3G47590.2
AT3G47590.1 |
AT3G47590
|
alpha/beta-Hydrolases superfamily protein |
| Chr3_-_16898013 | 0.08 |
AT3G45980.1
|
HTB9
|
Histone superfamily protein |
| Chr3_-_1905697 | 0.08 |
AT3G06290.3
|
SAC3B
|
SAC3/GANP/Nin1/mts3/eIF-3 p25 family |
| Chr1_+_2137871 | 0.08 |
AT1G06970.1
|
CHX14
|
cation/hydrogen exchanger 14 |
| Chr3_+_6516891 | 0.08 |
AT3G18900.2
AT3G18900.1 AT3G18900.3 AT3G18900.4 AT3G18900.5 |
AT3G18900
|
ternary complex factor MIP1 leucine-zipper protein |
| Chr2_+_12523276 | 0.08 |
AT2G29125.1
|
RTFL2
|
ROTUNDIFOLIA like 2 |
| Chr4_-_320935 | 0.08 |
AT4G00752.1
|
AT4G00752
|
UBX domain-containing protein |
| Chr5_+_22062805 | 0.08 |
AT5G54320.1
|
AT5G54320
|
hypothetical protein (DUF295) |
| Chr3_-_1903966 | 0.08 |
AT3G06290.4
|
SAC3B
|
SAC3/GANP/Nin1/mts3/eIF-3 p25 family |
| Chr3_+_13601800 | 0.08 |
AT3G33058.1
|
AT3G33058
|
|
| Chr5_-_19883251 | 0.08 |
AT5G49040.1
AT5G49030.3 |
AT5G49040
OVA2
|
Disease resistance-responsive (dirigent-like protein) family protein tRNA synthetase class I (I, L, M and V) family protein |
| Chr3_-_17350953 | 0.08 |
AT3G47110.1
|
AT3G47110
|
Leucine-rich repeat protein kinase family protein |
| Chr2_-_15980763 | 0.08 |
AT2G38130.1
AT2G38130.2 |
ATMAK3
|
Acyl-CoA N-acyltransferases (NAT) superfamily protein |
| Chr5_+_26857154 | 0.07 |
AT5G67320.1
|
HOS15
|
WD-40 repeat family protein |
| Chr1_+_9429008 | 0.07 |
AT1G27150.1
|
AT1G27150
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
| Chr2_+_13343724 | 0.07 |
AT2G31290.2
AT2G31290.1 |
AT2G31290
|
Ubiquitin carboxyl-terminal hydrolase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G18880
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | GO:0090065 | regulation of production of siRNA involved in RNA interference(GO:0090065) |
| 0.1 | 0.3 | GO:0071596 | ubiquitin-dependent protein catabolic process via the N-end rule pathway(GO:0071596) |
| 0.1 | 0.3 | GO:0071242 | cellular response to ammonium ion(GO:0071242) |
| 0.1 | 0.3 | GO:0009211 | deoxyribonucleoside triphosphate biosynthetic process(GO:0009202) pyrimidine deoxyribonucleoside triphosphate metabolic process(GO:0009211) pyrimidine deoxyribonucleotide metabolic process(GO:0009219) pyrimidine deoxyribonucleotide biosynthetic process(GO:0009221) 2'-deoxyribonucleotide biosynthetic process(GO:0009265) deoxyribose phosphate biosynthetic process(GO:0046385) |
| 0.1 | 0.2 | GO:0046704 | CDP metabolic process(GO:0046704) CDP biosynthetic process(GO:0046705) |
| 0.0 | 0.1 | GO:0040019 | negative regulation of immune effector process(GO:0002698) positive regulation of embryonic development(GO:0040019) negative regulation of defense response to virus(GO:0050687) |
| 0.0 | 0.2 | GO:0006428 | isoleucyl-tRNA aminoacylation(GO:0006428) |
| 0.0 | 0.1 | GO:0043618 | regulation of transcription from RNA polymerase II promoter in response to stress(GO:0043618) |
| 0.0 | 0.1 | GO:0046741 | transport of virus in host, tissue to tissue(GO:0046741) |
| 0.0 | 0.1 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
| 0.0 | 0.1 | GO:0000730 | DNA recombinase assembly(GO:0000730) strand invasion(GO:0042148) |
| 0.0 | 0.1 | GO:0036123 | histone H3-K9 dimethylation(GO:0036123) regulation of histone H3-K9 dimethylation(GO:1900109) |
| 0.0 | 0.1 | GO:0031114 | regulation of microtubule depolymerization(GO:0031114) |
| 0.0 | 0.2 | GO:0035335 | peptidyl-tyrosine dephosphorylation(GO:0035335) |
| 0.0 | 0.1 | GO:0017196 | N-terminal protein amino acid acetylation(GO:0006474) N-terminal peptidyl-methionine acetylation(GO:0017196) |
| 0.0 | 0.1 | GO:0006747 | FAD biosynthetic process(GO:0006747) flavin adenine dinucleotide biosynthetic process(GO:0072388) |
| 0.0 | 0.1 | GO:0042276 | error-prone translesion synthesis(GO:0042276) |
| 0.0 | 0.1 | GO:0016120 | carotene biosynthetic process(GO:0016120) |
| 0.0 | 0.2 | GO:0080183 | response to photooxidative stress(GO:0080183) |
| 0.0 | 0.1 | GO:0010067 | procambium histogenesis(GO:0010067) inositol trisphosphate metabolic process(GO:0032957) |
| 0.0 | 0.1 | GO:0048446 | petal morphogenesis(GO:0048446) |
| 0.0 | 0.1 | GO:0051418 | interphase microtubule nucleation by interphase microtubule organizing center(GO:0051415) microtubule nucleation by microtubule organizing center(GO:0051418) |
| 0.0 | 0.2 | GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0019288) |
| 0.0 | 0.4 | GO:0046219 | tryptophan biosynthetic process(GO:0000162) indolalkylamine biosynthetic process(GO:0046219) |
| 0.0 | 0.1 | GO:0090506 | axillary shoot meristem initiation(GO:0090506) |
| 0.0 | 0.3 | GO:0051553 | flavone biosynthetic process(GO:0051553) flavonol biosynthetic process(GO:0051555) |
| 0.0 | 0.2 | GO:0009610 | response to symbiotic fungus(GO:0009610) |
| 0.0 | 0.1 | GO:0018344 | protein geranylgeranylation(GO:0018344) |
| 0.0 | 0.2 | GO:0080113 | regulation of seed growth(GO:0080113) |
| 0.0 | 0.0 | GO:0090435 | protein localization to nuclear envelope(GO:0090435) |
| 0.0 | 0.1 | GO:0010239 | chloroplast mRNA processing(GO:0010239) |
| 0.0 | 0.1 | GO:0010235 | guard mother cell cytokinesis(GO:0010235) |
| 0.0 | 0.3 | GO:0009697 | salicylic acid biosynthetic process(GO:0009697) |
| 0.0 | 0.1 | GO:0031507 | heterochromatin assembly(GO:0031507) |
| 0.0 | 0.2 | GO:0006002 | fructose 6-phosphate metabolic process(GO:0006002) |
| 0.0 | 0.4 | GO:0010252 | auxin homeostasis(GO:0010252) |
| 0.0 | 0.1 | GO:0009972 | cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087) |
| 0.0 | 0.1 | GO:0010088 | phloem development(GO:0010088) |
| 0.0 | 0.1 | GO:0010231 | maintenance of seed dormancy(GO:0010231) maintenance of dormancy(GO:0097437) |
| 0.0 | 0.2 | GO:0030497 | fatty acid elongation(GO:0030497) |
| 0.0 | 0.0 | GO:2000693 | positive regulation of seed maturation(GO:2000693) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | GO:0070390 | transcription export complex 2(GO:0070390) |
| 0.0 | 0.1 | GO:0009501 | amyloplast(GO:0009501) |
| 0.0 | 0.1 | GO:0031932 | TORC2 complex(GO:0031932) |
| 0.0 | 0.1 | GO:0032155 | equatorial microtubule organizing center(GO:0000923) gamma-tubulin large complex(GO:0000931) gamma-tubulin ring complex(GO:0008274) cell division site part(GO:0032155) |
| 0.0 | 0.1 | GO:0031414 | N-terminal protein acetyltransferase complex(GO:0031414) NatC complex(GO:0031417) |
| 0.0 | 0.1 | GO:0005968 | Rab-protein geranylgeranyltransferase complex(GO:0005968) |
| 0.0 | 0.1 | GO:0005776 | autophagosome(GO:0005776) |
| 0.0 | 0.1 | GO:0089701 | U2AF(GO:0089701) |
| 0.0 | 0.2 | GO:0031965 | nuclear membrane(GO:0031965) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | GO:0009041 | uridylate kinase activity(GO:0009041) |
| 0.1 | 0.4 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.1 | 0.2 | GO:0008661 | 1-deoxy-D-xylulose-5-phosphate synthase activity(GO:0008661) |
| 0.0 | 0.2 | GO:0004048 | anthranilate phosphoribosyltransferase activity(GO:0004048) |
| 0.0 | 0.2 | GO:0004049 | anthranilate synthase activity(GO:0004049) |
| 0.0 | 0.2 | GO:0004822 | isoleucine-tRNA ligase activity(GO:0004822) |
| 0.0 | 0.3 | GO:0045431 | flavonol synthase activity(GO:0045431) |
| 0.0 | 0.1 | GO:0051010 | microtubule plus-end binding(GO:0051010) |
| 0.0 | 0.2 | GO:0003872 | 6-phosphofructokinase activity(GO:0003872) |
| 0.0 | 0.1 | GO:0004614 | phosphoglucomutase activity(GO:0004614) |
| 0.0 | 0.1 | GO:0000009 | alpha-1,6-mannosyltransferase activity(GO:0000009) |
| 0.0 | 0.1 | GO:0004663 | Rab geranylgeranyltransferase activity(GO:0004663) |
| 0.0 | 0.2 | GO:0016314 | phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity(GO:0016314) |
| 0.0 | 0.1 | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
| 0.0 | 0.1 | GO:0004609 | phosphatidylserine decarboxylase activity(GO:0004609) |
| 0.0 | 0.1 | GO:0046030 | inositol trisphosphate phosphatase activity(GO:0046030) |
| 0.0 | 0.1 | GO:0043015 | gamma-tubulin binding(GO:0043015) |
| 0.0 | 0.1 | GO:0000150 | recombinase activity(GO:0000150) |
| 0.0 | 0.1 | GO:0003919 | FMN adenylyltransferase activity(GO:0003919) |
| 0.0 | 0.2 | GO:0070567 | cytidylyltransferase activity(GO:0070567) |
| 0.0 | 0.1 | GO:0038199 | ethylene receptor activity(GO:0038199) ethylene binding(GO:0051740) alkene binding(GO:0072328) |
| 0.0 | 0.1 | GO:0004126 | cytidine deaminase activity(GO:0004126) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.0 | 0.1 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.0 | 0.1 | PID BARD1 PATHWAY | BARD1 signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | REACTOME MTORC1 MEDIATED SIGNALLING | Genes involved in mTORC1-mediated signalling |
| 0.0 | 0.1 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.0 | 0.0 | REACTOME TRANSPORT OF MATURE TRANSCRIPT TO CYTOPLASM | Genes involved in Transport of Mature Transcript to Cytoplasm |
| 0.0 | 0.1 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
| 0.0 | 0.1 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |